Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31126 * 1 3 3 Br 1.89102 * 119.99708 * 2 1 4 4 C 1.50700 * 120.00312 * 180.02562 * 2 1 3 5 5 N 1.46500 * 109.47377 * 94.99654 * 4 2 1 6 6 C 1.36745 * 127.13606 * 275.64467 * 5 4 2 7 7 C 1.50703 * 126.34642 * 359.97438 * 6 5 4 8 8 N 1.30293 * 107.30300 * 180.02562 * 6 5 4 9 9 N 1.28519 * 110.05467 * 359.72166 * 8 6 5 10 10 C 1.31218 * 109.86334 * 0.45679 * 9 8 6 11 11 N 1.38579 * 126.47236 * 179.81998 * 10 9 8 12 12 C 1.46894 * 111.00276 * 302.47935 * 11 10 9 13 13 C 1.46898 * 111.00086 * 66.43684 * 11 10 9 14 14 H 1.09000 * 109.47097 * 54.99575 * 13 11 10 15 15 C 1.52996 * 109.47241 * 295.00045 * 13 11 10 16 16 C 1.50693 * 109.47116 * 174.99452 * 13 11 10 17 17 H 1.08002 * 120.00192 * 28.01428 * 16 13 11 18 18 C 1.37884 * 120.00309 * 208.00664 * 16 13 11 19 19 N 1.31515 * 119.99920 * 178.90135 * 18 16 13 20 20 Si 1.86795 * 119.99634 * 358.90707 * 18 16 13 21 21 H 1.48496 * 109.47416 * 92.17708 * 20 18 16 22 22 H 1.48502 * 109.47176 * 212.17779 * 20 18 16 23 23 H 1.48502 * 109.47390 * 332.17519 * 20 18 16 24 24 H 1.08001 * 119.99522 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00232 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47030 * 334.99538 * 4 2 1 27 27 H 1.09000 * 109.47020 * 214.99178 * 4 2 1 28 28 H 1.09007 * 109.46702 * 90.00407 * 7 6 5 29 29 H 1.08991 * 109.47009 * 210.00340 * 7 6 5 30 30 H 1.09005 * 109.47025 * 330.01114 * 7 6 5 31 31 H 1.09005 * 109.46914 * 62.51465 * 12 11 10 32 32 H 1.08999 * 109.47571 * 182.51317 * 12 11 10 33 33 H 1.09000 * 109.47636 * 302.51781 * 12 11 10 34 34 H 1.08997 * 109.47367 * 183.93070 * 15 13 11 35 35 H 1.09004 * 109.46934 * 303.93323 * 15 13 11 36 36 H 1.08995 * 109.47495 * 63.92882 * 15 13 11 37 37 H 0.97002 * 119.99422 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2567 1.6377 0.0000 4 6 2.0648 -1.3051 -0.0006 5 7 2.4132 -1.6672 -1.3767 6 6 1.6258 -2.3226 -2.2824 7 6 0.2202 -2.8152 -2.0525 8 7 2.3164 -2.4431 -3.3807 9 7 3.4753 -1.9075 -3.2335 10 6 3.5909 -1.4210 -2.0204 11 7 4.6978 -0.7742 -1.4942 12 6 5.8908 -1.6281 -1.5674 13 6 4.9273 0.5101 -2.1693 14 1 4.0224 1.1153 -2.1163 15 6 5.2873 0.2586 -3.6349 16 6 6.0592 1.2385 -1.4918 17 1 6.8340 0.6814 -0.9860 18 6 6.1060 2.6163 -1.5177 19 7 7.0822 3.2527 -0.9080 20 14 4.7828 3.5788 -2.4187 21 1 3.6930 3.9274 -1.4722 22 1 5.3697 4.8231 -2.9777 23 1 4.2336 2.7513 -3.5227 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.4399 -2.0856 0.4335 27 1 2.9756 -1.1990 0.5888 28 1 -0.4882 -2.0336 -2.3273 29 1 0.0407 -3.6996 -2.6637 30 1 0.0916 -3.0685 -1.0001 31 1 6.1207 -1.8423 -2.6112 32 1 6.7346 -1.1137 -1.1076 33 1 5.7023 -2.5620 -1.0380 34 1 5.5256 1.2060 -4.1183 35 1 6.1512 -0.4040 -3.6883 36 1 4.4416 -0.2055 -4.1424 37 1 7.1152 4.2219 -0.9266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434588796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = 124.709106 kcal Electronic energy + Delta-G solvation = -21400.173203 eV Core-core repulsion = 18261.919824 eV Total energy + Delta-G solvation = -3138.253379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.62748 -37.39960 -36.45867 -33.14181 -32.77084 -31.58403 -29.79450 -29.61005 -27.42282 -26.76722 -25.41246 -25.00871 -21.61964 -20.96942 -19.88136 -19.07310 -17.08432 -16.68145 -16.26554 -15.57592 -15.09581 -14.78264 -14.23583 -14.05190 -13.67296 -13.38259 -12.85407 -12.80326 -12.41199 -12.27091 -11.95384 -11.89666 -11.61493 -11.48726 -11.31196 -11.07369 -10.87929 -10.42323 -10.34181 -10.14126 -9.93667 -9.75273 -9.69147 -9.22674 -8.89380 -8.61983 -8.51810 -7.83189 -6.12280 -4.09827 1.39604 1.80273 2.07642 2.71167 3.19909 3.22254 3.33172 3.38825 4.34095 4.37055 4.45222 4.51852 4.63003 4.93450 5.17261 5.24354 5.30335 5.36024 5.58312 5.68936 5.73505 5.88814 5.90179 6.12785 6.26219 6.33104 6.39548 6.61294 6.72335 6.75031 6.88250 7.11544 7.26885 7.55224 7.81872 7.99974 8.55045 8.92234 9.13357 9.50053 10.99991 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.008309 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.161136 B = 3369.075701 C = 4649.625785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.153 4.153 3 Br -0.019 7.019 4 C 0.157 3.843 5 N -0.468 5.468 6 C 0.156 3.844 7 C -0.059 4.059 8 N -0.293 5.293 9 N -0.316 5.316 10 C 0.377 3.623 11 N -0.457 5.457 12 C 0.042 3.958 13 C 0.193 3.807 14 H 0.049 0.951 15 C -0.181 4.181 16 C -0.495 4.495 17 H 0.084 0.916 18 C 0.083 3.917 19 N -0.894 5.894 20 Si 0.852 3.148 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.259 1.259 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.557 -8.183 4.959 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.233 4.233 3 Br 0.065 6.935 4 C 0.032 3.968 5 N -0.162 5.162 6 C -0.111 4.111 7 C -0.118 4.118 8 N -0.134 5.134 9 N -0.158 5.158 10 C 0.021 3.979 11 N -0.183 5.183 12 C -0.105 4.105 13 C 0.088 3.912 14 H 0.067 0.933 15 C -0.240 4.240 16 C -0.533 4.533 17 H 0.101 0.899 18 C -0.119 4.119 19 N -0.532 5.532 20 Si 0.679 3.321 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.183 1.183 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.835 -7.687 4.084 17.200 hybrid contribution -1.059 0.676 0.147 1.265 sum -15.894 -7.011 4.231 17.879 Atomic orbital electron populations 1.24223 0.93927 1.03763 0.95078 1.24530 0.96765 0.94760 1.07249 1.97065 1.75532 1.23786 1.97078 1.20792 1.02222 0.92657 0.81082 1.46377 1.13041 1.44123 1.12663 1.24627 0.97282 1.01442 0.87717 1.20136 0.86954 1.02125 1.02623 1.73950 1.00420 1.18699 1.20289 1.74751 1.11948 1.15250 1.13886 1.23045 0.88652 0.98561 0.87623 1.59424 1.00024 1.04657 1.54170 1.22321 0.92259 0.95088 1.00868 1.19841 0.98108 0.83880 0.89416 0.93307 1.22752 1.00873 1.00717 0.99686 1.20802 1.07111 0.91035 1.34357 0.89855 1.24762 0.95220 0.97326 0.94636 1.69863 1.32024 1.08429 1.42914 0.87247 0.83042 0.80250 0.81527 1.19847 1.21302 1.18300 0.86361 0.86553 0.87931 0.86125 0.90133 0.89002 0.90999 0.94053 0.88826 0.93550 0.93307 0.93045 0.93569 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 13.98 28.98 0.41 -0.79 16 2 C -0.15 -1.95 5.99 -36.06 -0.22 -2.17 16 3 Br -0.02 -0.33 32.64 -68.01 -2.22 -2.55 16 4 C 0.16 1.96 6.18 -5.19 -0.03 1.93 16 5 N -0.47 -7.48 2.79 -115.37 -0.32 -7.80 16 6 C 0.16 2.38 8.07 -154.01 -1.24 1.13 16 7 C -0.06 -0.54 10.19 36.01 0.37 -0.17 16 8 N -0.29 -5.61 12.18 32.99 0.40 -5.21 16 9 N -0.32 -6.68 9.82 30.31 0.30 -6.38 16 10 C 0.38 7.43 6.25 -318.88 -1.99 5.44 16 11 N -0.46 -9.52 4.74 -176.10 -0.83 -10.36 16 12 C 0.04 0.81 8.76 60.06 0.53 1.34 16 13 C 0.19 4.56 1.86 -68.87 -0.13 4.43 16 14 H 0.05 1.20 4.73 -51.93 -0.25 0.95 16 15 C -0.18 -4.24 7.98 37.16 0.30 -3.94 16 16 C -0.49 -13.19 8.67 -34.44 -0.30 -13.49 16 17 H 0.08 2.36 6.30 -52.49 -0.33 2.03 16 18 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 19 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 20 Si 0.85 21.31 26.26 -169.99 -4.46 16.85 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.26 -6.43 5.88 56.52 0.33 -6.09 16 24 H 0.12 0.74 7.93 -52.49 -0.42 0.32 16 25 H 0.12 1.02 8.05 -52.49 -0.42 0.60 16 26 H 0.10 0.86 7.28 -51.93 -0.38 0.48 16 27 H 0.12 1.65 8.10 -51.93 -0.42 1.23 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.46 7.40 -51.93 -0.38 0.08 16 31 H 0.04 0.81 6.25 -51.93 -0.32 0.49 16 32 H 0.09 1.87 6.16 -51.93 -0.32 1.55 16 33 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.05 1.17 6.59 -51.93 -0.34 0.83 16 35 H 0.05 1.16 6.21 -51.93 -0.32 0.83 16 36 H 0.05 1.08 6.03 -51.93 -0.31 0.77 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -32.59 319.62 -8.65 -41.24 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.69 Total: -0.88 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.41 Total: -4.08 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.32 Total: -55.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.46 Total: 16.85 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.22 Total: -2.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.59 -8.65 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434588796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.952 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds