Wall clock time and date at job start Tue Mar 31 2020 14:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31126 * 1 3 3 Br 1.89102 * 119.99708 * 2 1 4 4 C 1.50700 * 120.00312 * 180.02562 * 2 1 3 5 5 N 1.46500 * 109.47377 * 94.99654 * 4 2 1 6 6 C 1.36745 * 127.13606 * 275.64467 * 5 4 2 7 7 C 1.50703 * 126.34642 * 359.97438 * 6 5 4 8 8 N 1.30293 * 107.30300 * 180.02562 * 6 5 4 9 9 N 1.28519 * 110.05467 * 359.72166 * 8 6 5 10 10 C 1.31218 * 109.86334 * 0.45679 * 9 8 6 11 11 N 1.38579 * 126.47236 * 179.81998 * 10 9 8 12 12 C 1.46894 * 111.00276 * 302.47935 * 11 10 9 13 13 C 1.46898 * 111.00086 * 66.43684 * 11 10 9 14 14 H 1.09000 * 109.47097 * 54.99575 * 13 11 10 15 15 C 1.52996 * 109.47241 * 295.00045 * 13 11 10 16 16 C 1.50693 * 109.47116 * 174.99452 * 13 11 10 17 17 H 1.08002 * 120.00192 * 28.01428 * 16 13 11 18 18 C 1.37884 * 120.00309 * 208.00664 * 16 13 11 19 19 N 1.31515 * 119.99920 * 178.90135 * 18 16 13 20 20 Si 1.86795 * 119.99634 * 358.90707 * 18 16 13 21 21 H 1.48496 * 109.47416 * 92.17708 * 20 18 16 22 22 H 1.48502 * 109.47176 * 212.17779 * 20 18 16 23 23 H 1.48502 * 109.47390 * 332.17519 * 20 18 16 24 24 H 1.08001 * 119.99522 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00232 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47030 * 334.99538 * 4 2 1 27 27 H 1.09000 * 109.47020 * 214.99178 * 4 2 1 28 28 H 1.09007 * 109.46702 * 90.00407 * 7 6 5 29 29 H 1.08991 * 109.47009 * 210.00340 * 7 6 5 30 30 H 1.09005 * 109.47025 * 330.01114 * 7 6 5 31 31 H 1.09005 * 109.46914 * 62.51465 * 12 11 10 32 32 H 1.08999 * 109.47571 * 182.51317 * 12 11 10 33 33 H 1.09000 * 109.47636 * 302.51781 * 12 11 10 34 34 H 1.08997 * 109.47367 * 183.93070 * 15 13 11 35 35 H 1.09004 * 109.46934 * 303.93323 * 15 13 11 36 36 H 1.08995 * 109.47495 * 63.92882 * 15 13 11 37 37 H 0.97002 * 119.99422 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2567 1.6377 0.0000 4 6 2.0648 -1.3051 -0.0006 5 7 2.4132 -1.6672 -1.3767 6 6 1.6258 -2.3226 -2.2824 7 6 0.2202 -2.8152 -2.0525 8 7 2.3164 -2.4431 -3.3807 9 7 3.4753 -1.9075 -3.2335 10 6 3.5909 -1.4210 -2.0204 11 7 4.6978 -0.7742 -1.4942 12 6 5.8908 -1.6281 -1.5674 13 6 4.9273 0.5101 -2.1693 14 1 4.0224 1.1153 -2.1163 15 6 5.2873 0.2586 -3.6349 16 6 6.0592 1.2385 -1.4918 17 1 6.8340 0.6814 -0.9860 18 6 6.1060 2.6163 -1.5177 19 7 7.0822 3.2527 -0.9080 20 14 4.7828 3.5788 -2.4187 21 1 3.6930 3.9274 -1.4722 22 1 5.3697 4.8231 -2.9777 23 1 4.2336 2.7513 -3.5227 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.4399 -2.0856 0.4335 27 1 2.9756 -1.1990 0.5888 28 1 -0.4882 -2.0336 -2.3273 29 1 0.0407 -3.6996 -2.6637 30 1 0.0916 -3.0685 -1.0001 31 1 6.1207 -1.8423 -2.6112 32 1 6.7346 -1.1137 -1.1076 33 1 5.7023 -2.5620 -1.0380 34 1 5.5256 1.2060 -4.1183 35 1 6.1512 -0.4040 -3.6883 36 1 4.4416 -0.2055 -4.1424 37 1 7.1152 4.2219 -0.9266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434588796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:01 Heat of formation + Delta-G solvation = 104.639563 kcal Electronic energy + Delta-G solvation = -21401.043484 eV Core-core repulsion = 18261.919824 eV Total energy + Delta-G solvation = -3139.123660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.93486 -39.08217 -37.47922 -34.76878 -34.21526 -32.84845 -31.36096 -30.80865 -28.63616 -27.77488 -27.20915 -26.78842 -23.19989 -22.10372 -21.28321 -20.26109 -19.00899 -17.93425 -17.59199 -17.04466 -16.51284 -16.19634 -15.53377 -15.31007 -15.16583 -14.79795 -14.46213 -13.87276 -13.68097 -13.50240 -13.44544 -13.28158 -13.05820 -12.87405 -12.75871 -12.51745 -12.36111 -12.26999 -12.03432 -11.77499 -11.50006 -11.22228 -11.07018 -10.79657 -10.76380 -10.13251 -9.88045 -9.47627 -8.29233 -6.28761 0.50799 0.81493 0.89072 1.21872 1.30824 1.36826 1.56289 1.86146 2.29067 2.90361 3.23231 3.47102 3.54988 3.74106 4.15003 4.15940 4.33368 4.45066 4.52320 4.56520 4.64692 4.74322 4.75471 4.87391 4.91428 5.00405 5.03087 5.03621 5.07307 5.15780 5.22060 5.37319 5.57804 5.79177 6.03221 6.20485 6.65907 6.75241 7.34132 7.79764 8.86252 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.008309 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.161136 B = 3369.075701 C = 4649.625785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.184 4.184 3 Br -0.082 7.082 4 C 0.154 3.846 5 N -0.463 5.463 6 C 0.183 3.817 7 C -0.062 4.062 8 N -0.339 5.339 9 N -0.348 5.348 10 C 0.352 3.648 11 N -0.456 5.456 12 C 0.047 3.953 13 C 0.204 3.796 14 H 0.045 0.955 15 C -0.173 4.173 16 C -0.485 4.485 17 H 0.057 0.943 18 C 0.041 3.959 19 N -0.937 5.937 20 Si 0.897 3.103 21 H -0.258 1.258 22 H -0.289 1.289 23 H -0.258 1.258 24 H 0.166 0.834 25 H 0.122 0.878 26 H 0.157 0.843 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 -9.994 5.589 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.264 4.264 3 Br 0.001 6.999 4 C 0.031 3.969 5 N -0.157 5.157 6 C -0.085 4.085 7 C -0.121 4.121 8 N -0.179 5.179 9 N -0.191 5.191 10 C -0.005 4.005 11 N -0.181 5.181 12 C -0.100 4.100 13 C 0.097 3.903 14 H 0.063 0.937 15 C -0.232 4.232 16 C -0.524 4.524 17 H 0.075 0.925 18 C -0.158 4.158 19 N -0.577 5.577 20 Si 0.723 3.277 21 H -0.183 1.183 22 H -0.215 1.215 23 H -0.182 1.182 24 H 0.184 0.816 25 H 0.140 0.860 26 H 0.174 0.826 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.856 -9.522 4.729 21.646 hybrid contribution 0.000 1.046 -0.004 1.046 sum -18.855 -8.475 4.725 21.206 Atomic orbital electron populations 1.24707 0.92474 1.06266 0.89027 1.24388 0.97407 0.92152 1.12480 1.97011 1.77415 1.27983 1.97495 1.21098 1.02550 0.94202 0.79003 1.46591 1.11674 1.43451 1.13952 1.25795 0.98520 0.98196 0.85979 1.20542 0.82985 1.02990 1.05581 1.73879 1.00496 1.20843 1.22656 1.74602 1.13530 1.15980 1.14954 1.22816 0.89476 1.00035 0.88170 1.59188 1.01051 1.04034 1.53820 1.22261 0.91599 0.95688 1.00446 1.19532 0.96458 0.85281 0.89038 0.93737 1.22653 1.00915 1.00036 0.99610 1.20946 1.07254 0.91038 1.33131 0.92461 1.25306 0.96748 0.98292 0.95450 1.69972 1.33970 1.08673 1.45104 0.86501 0.81454 0.78902 0.80818 1.18277 1.21541 1.18221 0.81633 0.85982 0.82588 0.88064 0.88081 0.87950 0.87007 0.94922 0.90325 0.91165 0.94450 0.92931 0.93514 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 13.98 67.66 0.95 -0.14 16 2 C -0.18 -4.05 5.99 25.52 0.15 -3.89 16 3 Br -0.08 -2.80 32.64 -20.37 -0.66 -3.46 16 4 C 0.15 3.26 6.18 85.63 0.53 3.79 16 5 N -0.46 -13.43 2.79 -518.90 -1.45 -14.88 16 6 C 0.18 4.86 8.07 137.64 1.11 5.98 16 7 C -0.06 -0.75 10.19 71.24 0.73 -0.02 16 8 N -0.34 -12.37 12.18 -49.53 -0.60 -12.97 16 9 N -0.35 -14.52 9.82 -58.01 -0.57 -15.09 16 10 C 0.35 13.58 6.25 260.11 1.62 15.20 16 11 N -0.46 -19.10 4.74 -711.04 -3.37 -22.47 16 12 C 0.05 1.86 8.76 127.69 1.12 2.98 16 13 C 0.20 9.76 1.86 44.17 0.08 9.84 16 14 H 0.04 2.20 4.73 -2.39 -0.01 2.19 16 15 C -0.17 -8.24 7.98 71.98 0.57 -7.67 16 16 C -0.49 -26.68 8.67 25.60 0.22 -26.46 16 17 H 0.06 3.40 6.30 -2.91 -0.02 3.38 16 18 C 0.04 2.32 5.47 84.66 0.46 2.79 16 19 N -0.94 -57.12 13.96 21.45 0.30 -56.83 16 20 Si 0.90 44.71 26.26 68.60 1.80 46.51 16 21 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.26 -12.68 5.88 99.48 0.58 -12.10 16 24 H 0.17 0.62 7.93 -2.91 -0.02 0.59 16 25 H 0.12 1.52 8.05 -2.91 -0.02 1.49 16 26 H 0.16 1.58 7.28 -2.39 -0.02 1.56 16 27 H 0.10 2.58 8.10 -2.39 -0.02 2.56 16 28 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 0.50 7.40 -2.38 -0.02 0.48 16 31 H 0.03 1.32 6.25 -2.38 -0.01 1.30 16 32 H 0.08 3.28 6.16 -2.39 -0.01 3.26 16 33 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 34 H 0.04 1.81 6.59 -2.39 -0.02 1.80 16 35 H 0.05 2.43 6.21 -2.39 -0.01 2.42 16 36 H 0.05 2.22 6.03 -2.39 -0.01 2.20 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.82 319.62 3.96 -71.86 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.96 Total: 4.94 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 7.55 Total: 2.39 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -5.69 Total: -122.23 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.80 Total: 46.51 kcal Atomic # 35 Polarization: -2.80 SS G_CDS: -0.66 Total: -3.46 kcal Total: -75.82 3.96 -71.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434588796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.501 kcal (2) G-P(sol) polarization free energy of solvation -75.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds