Wall clock time and date at job start Tue Mar 31 2020 15:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99825 * 2 1 4 4 H 1.48497 * 109.46794 * 273.97232 * 3 2 1 5 5 H 1.48500 * 109.46762 * 33.97058 * 3 2 1 6 6 H 1.48498 * 109.47119 * 153.97212 * 3 2 1 7 7 C 1.37873 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00605 * 3.55969 * 7 2 1 9 9 C 1.50702 * 119.99632 * 183.56126 * 7 2 1 10 10 O 1.42902 * 110.64380 * 321.58014 * 9 7 2 11 11 C 1.55153 * 110.72631 * 84.72732 * 9 7 2 12 12 C 1.54909 * 101.58453 * 154.03892 * 11 9 7 13 13 N 1.47417 * 104.83096 * 322.99050 * 12 11 9 14 14 C 1.34787 * 125.64633 * 204.08873 * 13 12 11 15 15 O 1.21584 * 119.99772 * 180.02562 * 14 13 12 16 16 N 1.34769 * 119.99826 * 0.02928 * 14 13 12 17 17 C 1.40141 * 120.00016 * 183.39893 * 16 14 13 18 18 C 1.39032 * 120.07955 * 34.29690 * 17 16 14 19 19 F 1.35099 * 120.04844 * 0.02562 * 18 17 16 20 20 C 1.38291 * 119.90383 * 179.97438 * 18 17 16 21 21 C 1.38306 * 120.06299 * 0.02562 * 20 18 17 22 22 C 1.38232 * 120.16240 * 0.02562 * 21 20 18 23 23 C 1.38281 * 120.09676 * 0.25688 * 22 21 20 24 24 Cl 1.73602 * 120.03298 * 179.72301 * 23 22 21 25 25 C 1.47024 * 108.70669 * 24.35605 * 13 12 11 26 26 H 0.96996 * 120.00153 * 0.02562 * 1 2 3 27 27 H 0.96701 * 113.99656 * 308.10126 * 10 9 7 28 28 H 1.09002 * 111.00089 * 35.96641 * 11 9 7 29 29 H 1.08996 * 111.03586 * 272.13330 * 11 9 7 30 30 H 1.08999 * 110.36254 * 204.15106 * 12 11 9 31 31 H 1.09001 * 110.36327 * 81.83119 * 12 11 9 32 32 H 0.97002 * 120.00306 * 3.39432 * 16 14 13 33 33 H 1.07995 * 119.96852 * 179.97438 * 20 18 17 34 34 H 1.08003 * 119.91648 * 179.97438 * 21 20 18 35 35 H 1.08002 * 119.94631 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.88186 * 118.12727 * 25 13 12 37 37 H 1.08993 * 109.88413 * 239.29326 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4126 2.0949 -1.3967 5 1 1.4910 2.6270 0.7823 6 1 3.5861 1.4175 0.6144 7 6 2.0045 -1.1940 0.0005 8 1 1.4662 -2.1285 -0.0571 9 6 3.5094 -1.1951 0.0816 10 8 4.0562 -0.1228 -0.6886 11 6 3.9798 -1.1065 1.5574 12 6 5.3716 -1.7824 1.4814 13 7 5.2070 -2.8765 0.5073 14 6 5.9618 -3.9914 0.4433 15 8 5.7350 -4.8311 -0.4062 16 7 6.9678 -4.1754 1.3211 17 6 7.7973 -5.2994 1.2106 18 6 8.1103 -5.8141 -0.0425 19 9 7.6154 -5.2310 -1.1561 20 6 8.9297 -6.9232 -0.1473 21 6 9.4369 -7.5201 0.9926 22 6 9.1267 -7.0112 2.2398 23 6 8.3032 -5.9061 2.3527 24 17 7.9089 -5.2727 3.9202 25 6 4.0875 -2.5473 -0.3870 26 1 -0.4850 0.8400 -0.0004 27 1 3.7333 -0.0883 -1.5995 28 1 3.3110 -1.6622 2.2147 29 1 4.0665 -0.0686 1.8788 30 1 5.6533 -2.1811 2.4559 31 1 6.1198 -1.0715 1.1307 32 1 7.1177 -3.5297 2.0293 33 1 9.1731 -7.3241 -1.1201 34 1 10.0763 -8.3864 0.9080 35 1 9.5244 -7.4803 3.1277 36 1 4.4449 -2.4641 -1.4134 37 1 3.3207 -3.3191 -0.3207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434718298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:36 Heat of formation + Delta-G solvation = -78.369110 kcal Electronic energy + Delta-G solvation = -25967.531943 eV Core-core repulsion = 21879.147061 eV Total energy + Delta-G solvation = -4088.384882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.69807 -40.51828 -39.18509 -37.81726 -36.76013 -34.87273 -34.82551 -32.41737 -30.78756 -30.61056 -29.36900 -28.31609 -25.37723 -23.40651 -23.17187 -22.33019 -20.15825 -19.72114 -18.57328 -17.87960 -17.59052 -17.12295 -16.65755 -15.64150 -15.42471 -15.27715 -15.14270 -14.86858 -14.70433 -14.52449 -13.85926 -13.68104 -13.55162 -13.23693 -12.80533 -12.63198 -12.31268 -12.12245 -11.88828 -11.81278 -11.62326 -11.54920 -11.33149 -11.06731 -10.70395 -10.55894 -10.39130 -10.18429 -9.90116 -9.14260 -8.95496 -8.77494 -8.54501 -8.40085 -8.05453 -6.25013 -4.38736 0.69100 0.85512 1.71172 2.54006 3.08226 3.35191 3.41567 3.46962 3.65957 3.85926 4.19346 4.40471 4.48972 4.54413 4.86904 4.95518 4.98252 5.06750 5.24470 5.50906 5.52035 5.56686 5.68515 5.74945 5.78779 5.92961 6.06939 6.16731 6.41694 6.47902 6.58737 6.62547 6.70414 6.95057 7.10610 7.37187 8.00661 8.06496 8.60325 8.63742 8.76742 9.34009 10.84219 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.003344 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.732379 B = 8370.803408 C = 9014.517963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.290 1.290 5 H -0.320 1.320 6 H -0.247 1.247 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.564 6.564 11 C -0.116 4.116 12 C 0.095 3.905 13 N -0.620 5.620 14 C 0.711 3.289 15 O -0.563 6.563 16 N -0.682 5.682 17 C 0.151 3.849 18 C 0.112 3.888 19 F -0.104 7.104 20 C -0.133 4.133 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.046 4.046 24 Cl -0.055 7.055 25 C 0.113 3.887 26 H 0.267 0.733 27 H 0.370 0.630 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.410 0.590 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.060 0.940 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.291 -10.885 5.679 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.758 3.242 4 H -0.217 1.217 5 H -0.251 1.251 6 H -0.172 1.172 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.372 6.372 11 C -0.154 4.154 12 C -0.028 4.028 13 N -0.356 5.356 14 C 0.414 3.586 15 O -0.439 6.439 16 N -0.331 5.331 17 C 0.052 3.948 18 C 0.089 3.911 19 F -0.082 7.082 20 C -0.153 4.153 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.076 4.076 24 Cl -0.026 7.026 25 C -0.009 4.009 26 H 0.077 0.923 27 H 0.218 0.782 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.248 0.752 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.144 -11.183 5.661 23.725 hybrid contribution -0.107 1.225 -0.175 1.242 sum 20.037 -9.958 5.486 23.038 Atomic orbital electron populations 1.69950 1.06786 1.27808 1.47527 1.25126 0.94948 1.00340 0.92651 0.86163 0.79527 0.80385 0.78146 1.21731 1.25091 1.17184 1.21200 0.87926 0.95488 1.54460 0.90040 1.20073 0.92910 0.81270 0.87854 1.86418 1.71846 1.51917 1.27045 1.23057 0.93011 1.00931 0.98444 1.22447 1.00379 0.88942 0.91014 1.47642 1.34196 1.18217 1.35537 1.15399 0.79312 0.82340 0.81578 1.90998 1.71330 1.43773 1.37814 1.42711 1.31381 1.24464 1.34557 1.17236 0.95262 0.90742 0.91594 1.17336 0.96645 0.95355 0.81725 1.91668 1.84754 1.82695 1.49067 1.21195 0.98138 0.95053 1.00915 1.20881 1.00328 1.00222 0.90705 1.20901 0.97725 0.94593 0.99032 1.20485 1.04158 0.97812 0.85180 1.98382 1.93219 1.86323 1.24647 1.22790 0.86157 0.99634 0.92347 0.92311 0.78178 0.89544 0.89949 0.92212 0.91514 0.75245 0.83858 0.84041 0.84025 0.92137 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.92 21.64 24.96 -169.99 -4.24 17.39 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.32 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.25 -5.54 4.80 56.52 0.27 -5.27 16 7 C -0.55 -14.33 8.77 -34.44 -0.30 -14.63 16 8 H 0.08 2.33 7.78 -52.49 -0.41 1.92 16 9 C 0.22 4.72 0.70 -89.93 -0.06 4.66 16 10 O -0.56 -11.77 8.58 -35.23 -0.30 -12.07 16 11 C -0.12 -2.21 5.91 -24.58 -0.15 -2.36 16 12 C 0.10 1.53 6.59 -2.53 -0.02 1.51 16 13 N -0.62 -11.44 3.33 -176.23 -0.59 -12.03 16 14 C 0.71 13.18 7.94 -86.92 -0.69 12.49 16 15 O -0.56 -12.16 13.12 5.29 0.07 -12.09 16 16 N -0.68 -10.07 5.02 -14.14 -0.07 -10.14 16 17 C 0.15 2.05 6.28 -83.53 -0.52 1.53 16 18 C 0.11 1.58 6.68 -39.27 -0.26 1.31 16 19 F -0.10 -1.81 13.44 2.25 0.03 -1.78 16 20 C -0.13 -1.34 10.02 -39.54 -0.40 -1.74 16 21 C -0.10 -0.78 10.04 -39.56 -0.40 -1.18 16 22 C -0.10 -0.86 9.82 -39.57 -0.39 -1.25 16 23 C -0.05 -0.51 6.33 -39.34 -0.25 -0.75 16 24 Cl -0.05 -0.55 27.95 -51.86 -1.45 -2.00 16 25 C 0.11 2.32 6.23 -3.05 -0.02 2.31 16 26 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 27 H 0.37 7.03 8.33 45.56 0.38 7.41 16 28 H 0.09 1.66 8.04 -51.93 -0.42 1.25 16 29 H 0.08 1.57 6.64 -51.93 -0.35 1.22 16 30 H 0.06 0.78 7.25 -51.93 -0.38 0.41 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 5.14 6.53 -40.82 -0.27 4.87 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.07 1.63 7.64 -51.93 -0.40 1.23 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -32.31 321.05 -7.70 -40.01 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -3.21 Total: 9.06 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -3.55 Total: 3.81 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.12 Total: -47.16 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.23 Total: -24.16 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.24 Total: 17.39 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.45 Total: -2.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.31 -7.70 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434718298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.362 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds