Wall clock time and date at job start Tue Mar 31 2020 15:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99825 * 2 1 4 4 H 1.48497 * 109.46794 * 273.97232 * 3 2 1 5 5 H 1.48500 * 109.46762 * 33.97058 * 3 2 1 6 6 H 1.48498 * 109.47119 * 153.97212 * 3 2 1 7 7 C 1.37873 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00605 * 3.55969 * 7 2 1 9 9 C 1.50702 * 119.99632 * 183.56126 * 7 2 1 10 10 O 1.42902 * 110.64380 * 321.58014 * 9 7 2 11 11 C 1.55153 * 110.72631 * 84.72732 * 9 7 2 12 12 C 1.54909 * 101.58453 * 154.03892 * 11 9 7 13 13 N 1.47417 * 104.83096 * 322.99050 * 12 11 9 14 14 C 1.34787 * 125.64633 * 204.08873 * 13 12 11 15 15 O 1.21584 * 119.99772 * 180.02562 * 14 13 12 16 16 N 1.34769 * 119.99826 * 0.02928 * 14 13 12 17 17 C 1.40141 * 120.00016 * 183.39893 * 16 14 13 18 18 C 1.39032 * 120.07955 * 34.29690 * 17 16 14 19 19 F 1.35099 * 120.04844 * 0.02562 * 18 17 16 20 20 C 1.38291 * 119.90383 * 179.97438 * 18 17 16 21 21 C 1.38306 * 120.06299 * 0.02562 * 20 18 17 22 22 C 1.38232 * 120.16240 * 0.02562 * 21 20 18 23 23 C 1.38281 * 120.09676 * 0.25688 * 22 21 20 24 24 Cl 1.73602 * 120.03298 * 179.72301 * 23 22 21 25 25 C 1.47024 * 108.70669 * 24.35605 * 13 12 11 26 26 H 0.96996 * 120.00153 * 0.02562 * 1 2 3 27 27 H 0.96701 * 113.99656 * 308.10126 * 10 9 7 28 28 H 1.09002 * 111.00089 * 35.96641 * 11 9 7 29 29 H 1.08996 * 111.03586 * 272.13330 * 11 9 7 30 30 H 1.08999 * 110.36254 * 204.15106 * 12 11 9 31 31 H 1.09001 * 110.36327 * 81.83119 * 12 11 9 32 32 H 0.97002 * 120.00306 * 3.39432 * 16 14 13 33 33 H 1.07995 * 119.96852 * 179.97438 * 20 18 17 34 34 H 1.08003 * 119.91648 * 179.97438 * 21 20 18 35 35 H 1.08002 * 119.94631 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.88186 * 118.12727 * 25 13 12 37 37 H 1.08993 * 109.88413 * 239.29326 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4126 2.0949 -1.3967 5 1 1.4910 2.6270 0.7823 6 1 3.5861 1.4175 0.6144 7 6 2.0045 -1.1940 0.0005 8 1 1.4662 -2.1285 -0.0571 9 6 3.5094 -1.1951 0.0816 10 8 4.0562 -0.1228 -0.6886 11 6 3.9798 -1.1065 1.5574 12 6 5.3716 -1.7824 1.4814 13 7 5.2070 -2.8765 0.5073 14 6 5.9618 -3.9914 0.4433 15 8 5.7350 -4.8311 -0.4062 16 7 6.9678 -4.1754 1.3211 17 6 7.7973 -5.2994 1.2106 18 6 8.1103 -5.8141 -0.0425 19 9 7.6154 -5.2310 -1.1561 20 6 8.9297 -6.9232 -0.1473 21 6 9.4369 -7.5201 0.9926 22 6 9.1267 -7.0112 2.2398 23 6 8.3032 -5.9061 2.3527 24 17 7.9089 -5.2727 3.9202 25 6 4.0875 -2.5473 -0.3870 26 1 -0.4850 0.8400 -0.0004 27 1 3.7333 -0.0883 -1.5995 28 1 3.3110 -1.6622 2.2147 29 1 4.0665 -0.0686 1.8788 30 1 5.6533 -2.1811 2.4559 31 1 6.1198 -1.0715 1.1307 32 1 7.1177 -3.5297 2.0293 33 1 9.1731 -7.3241 -1.1201 34 1 10.0763 -8.3864 0.9080 35 1 9.5244 -7.4803 3.1277 36 1 4.4449 -2.4641 -1.4134 37 1 3.3207 -3.3191 -0.3207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434718298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:35 Heat of formation + Delta-G solvation = -101.795655 kcal Electronic energy + Delta-G solvation = -25968.547794 eV Core-core repulsion = 21879.147061 eV Total energy + Delta-G solvation = -4089.400733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.79173 -41.79832 -40.29531 -39.25463 -37.54516 -36.47247 -36.00095 -34.47337 -32.14719 -31.48761 -30.52650 -29.87859 -27.16656 -24.67452 -24.08392 -23.49235 -21.65211 -21.19839 -19.91673 -19.36109 -18.93646 -18.14731 -17.75828 -17.18617 -16.82602 -16.65716 -16.53906 -16.14276 -15.87326 -15.54537 -15.31643 -15.08409 -14.63232 -14.57234 -14.22994 -14.13613 -13.99954 -13.34276 -13.29178 -13.03092 -12.76369 -12.70701 -12.43703 -12.37509 -12.31125 -12.10657 -11.86901 -11.68075 -11.36188 -11.10021 -10.79740 -10.19359 -9.84418 -9.75195 -9.21807 -8.35811 -6.52989 -0.10561 0.02403 0.89616 1.30318 1.48499 1.55823 1.80040 1.88774 2.43015 2.45208 2.67016 2.95379 3.26933 3.45430 3.68923 3.77729 3.82881 3.97895 4.16750 4.21354 4.24031 4.39390 4.49414 4.68689 4.76265 4.81322 4.93139 5.05752 5.10115 5.14348 5.21956 5.24398 5.34671 5.48404 5.74288 5.76922 6.00643 6.55876 6.67110 6.90694 7.24036 7.26703 8.77711 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.003344 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.732379 B = 8370.803408 C = 9014.517963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 0.991 3.009 4 H -0.282 1.282 5 H -0.332 1.332 6 H -0.226 1.226 7 C -0.552 4.552 8 H 0.037 0.963 9 C 0.221 3.779 10 O -0.559 6.559 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.624 5.624 14 C 0.709 3.291 15 O -0.600 6.600 16 N -0.670 5.670 17 C 0.118 3.882 18 C 0.071 3.929 19 F -0.135 7.135 20 C -0.132 4.132 21 C -0.081 4.081 22 C -0.092 4.092 23 C -0.049 4.049 24 Cl -0.049 7.049 25 C 0.122 3.878 26 H 0.269 0.731 27 H 0.378 0.622 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.419 0.581 33 H 0.161 0.839 34 H 0.187 0.813 35 H 0.176 0.824 36 H 0.057 0.943 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.078 -11.515 7.304 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.821 3.179 4 H -0.209 1.209 5 H -0.264 1.264 6 H -0.149 1.149 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.181 3.819 10 O -0.368 6.368 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.361 5.361 14 C 0.412 3.588 15 O -0.479 6.479 16 N -0.320 5.320 17 C 0.021 3.979 18 C 0.049 3.951 19 F -0.113 7.113 20 C -0.151 4.151 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.079 4.079 24 Cl -0.020 7.020 25 C -0.001 4.001 26 H 0.077 0.923 27 H 0.228 0.772 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.259 0.741 33 H 0.179 0.821 34 H 0.204 0.796 35 H 0.193 0.807 36 H 0.075 0.925 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.991 -11.834 7.315 27.733 hybrid contribution -1.236 1.206 -0.655 1.847 sum 22.756 -10.628 6.661 25.983 Atomic orbital electron populations 1.70083 1.08738 1.28700 1.49976 1.25959 0.95441 1.03894 0.92271 0.85108 0.78739 0.75583 0.78422 1.20867 1.26360 1.14939 1.21376 0.90530 0.93689 1.53419 0.94488 1.19900 0.90199 0.82009 0.89813 1.86374 1.71436 1.51278 1.27733 1.22973 0.94701 1.01795 0.95912 1.22530 0.98699 0.88397 0.92279 1.47569 1.33714 1.19064 1.35725 1.15529 0.79795 0.81743 0.81774 1.90966 1.72470 1.44973 1.39510 1.42416 1.30499 1.25293 1.33783 1.17520 0.96493 0.91342 0.92579 1.17915 0.98746 0.97293 0.81158 1.91578 1.85670 1.83536 1.50556 1.21539 0.96939 0.93700 1.02946 1.21420 0.98903 1.00310 0.89315 1.21406 0.95944 0.93083 1.00702 1.20679 1.04269 0.98329 0.84626 1.98385 1.93276 1.86426 1.23950 1.22425 0.86483 0.98384 0.92856 0.92265 0.77215 0.90308 0.89094 0.88608 0.89914 0.74111 0.82111 0.79604 0.80663 0.92451 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 2 C 0.02 1.33 5.47 84.65 0.46 1.80 16 3 Si 0.99 44.46 24.96 68.60 1.71 46.17 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.33 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.23 -9.27 4.80 99.48 0.48 -8.79 16 7 C -0.55 -29.61 8.77 25.60 0.22 -29.38 16 8 H 0.04 2.26 7.78 -2.91 -0.02 2.24 16 9 C 0.22 9.51 0.70 -10.35 -0.01 9.51 16 10 O -0.56 -22.37 8.58 -148.98 -1.28 -23.65 16 11 C -0.12 -4.24 5.91 31.98 0.19 -4.05 16 12 C 0.10 3.06 6.59 86.86 0.57 3.63 16 13 N -0.62 -22.88 3.33 -829.74 -2.76 -25.64 16 14 C 0.71 26.45 7.94 179.05 1.42 27.87 16 15 O -0.60 -26.84 13.12 -3.98 -0.05 -26.90 16 16 N -0.67 -19.26 5.02 -316.91 -1.59 -20.85 16 17 C 0.12 3.11 6.28 38.15 0.24 3.35 16 18 C 0.07 1.97 6.68 22.47 0.15 2.12 16 19 F -0.13 -4.89 13.44 44.97 0.60 -4.28 16 20 C -0.13 -2.36 10.02 22.30 0.22 -2.13 16 21 C -0.08 -0.88 10.04 22.28 0.22 -0.66 16 22 C -0.09 -1.15 9.82 22.28 0.22 -0.93 16 23 C -0.05 -0.95 6.33 22.43 0.14 -0.81 16 24 Cl -0.05 -0.87 27.95 -2.72 -0.08 -0.95 16 25 C 0.12 5.16 6.23 86.73 0.54 5.70 16 26 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.38 13.87 8.33 -74.06 -0.62 13.26 16 28 H 0.08 2.99 8.04 -2.39 -0.02 2.97 16 29 H 0.09 3.19 6.64 -2.39 -0.02 3.18 16 30 H 0.10 2.19 7.25 -2.39 -0.02 2.17 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.42 9.79 6.53 -92.71 -0.61 9.19 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 35 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 37 H 0.05 2.18 7.64 -2.39 -0.02 2.17 16 Total: -1.00 -74.68 321.05 1.16 -73.52 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.30 Total: 22.72 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 4.60 Total: 16.01 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -4.05 Total: -102.64 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.33 Total: -50.55 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.60 Total: -4.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.71 Total: 46.17 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -74.68 1.16 -73.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434718298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.277 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds