Wall clock time and date at job start Tue Mar 31 2020 15:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47161 * 299.99720 * 3 2 1 6 6 H 1.48498 * 109.47090 * 60.00096 * 3 2 1 7 7 C 1.37885 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99669 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64325 * 298.31285 * 9 7 2 11 11 C 1.55161 * 110.87268 * 175.06571 * 9 7 2 12 12 C 1.55127 * 101.48634 * 205.89857 * 11 9 7 13 13 N 1.47431 * 104.72048 * 37.29751 * 12 11 9 14 14 C 1.34772 * 125.64354 * 155.82053 * 13 12 11 15 15 O 1.21593 * 119.99510 * 179.69144 * 14 13 12 16 16 N 1.34775 * 120.00422 * 359.68429 * 14 13 12 17 17 C 1.40137 * 119.99762 * 185.04392 * 16 14 13 18 18 C 1.39040 * 120.08297 * 85.91351 * 17 16 14 19 19 F 1.35101 * 120.04629 * 359.97438 * 18 17 16 20 20 C 1.38296 * 119.90486 * 179.97438 * 18 17 16 21 21 C 1.38301 * 120.06438 * 0.02562 * 20 18 17 22 22 C 1.38232 * 120.16095 * 359.97438 * 21 20 18 23 23 C 1.38281 * 120.10199 * 359.74354 * 22 21 20 24 24 Cl 1.73593 * 120.03784 * 180.27411 * 23 22 21 25 25 C 1.47021 * 108.70357 * 335.54730 * 13 12 11 26 26 H 0.97003 * 119.99659 * 0.02562 * 1 2 3 27 27 H 0.96699 * 113.99875 * 61.68980 * 10 9 7 28 28 H 1.08998 * 111.00034 * 324.13902 * 11 9 7 29 29 H 1.09002 * 110.99865 * 87.98977 * 11 9 7 30 30 H 1.09000 * 110.49923 * 278.45420 * 12 11 9 31 31 H 1.09000 * 110.33928 * 156.05511 * 12 11 9 32 32 H 0.96996 * 120.00171 * 4.76617 * 16 14 13 33 33 H 1.08002 * 119.96652 * 179.97438 * 20 18 17 34 34 H 1.07999 * 119.91540 * 180.02562 * 21 20 18 35 35 H 1.08003 * 119.95032 * 179.97438 * 22 21 20 36 36 H 1.09000 * 109.88092 * 120.70514 * 25 13 12 37 37 H 1.08992 * 109.88325 * 241.71666 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2254 -3.7001 -0.1259 12 6 1.3104 -4.7744 -0.7702 13 7 0.4607 -4.0255 -1.7140 14 6 -0.1466 -4.5394 -2.8019 15 8 -0.8316 -3.8262 -3.5095 16 7 0.0056 -5.8436 -3.1057 17 6 -0.5374 -6.3546 -4.2922 18 6 0.1836 -6.2776 -5.4785 19 9 1.4092 -5.7092 -5.4896 20 6 -0.3557 -6.7835 -6.6472 21 6 -1.6105 -7.3649 -6.6364 22 6 -2.3296 -7.4430 -5.4585 23 6 -1.7945 -6.9445 -4.2849 24 17 -2.6962 -7.0498 -2.8052 25 6 0.3802 -2.6268 -1.2682 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2277 -1.9344 1.2626 28 1 3.0649 -3.4558 -0.7767 29 1 2.5745 -4.0239 0.8547 30 1 0.6974 -5.2592 -0.0104 31 1 1.9098 -5.5125 -1.3031 32 1 0.4944 -6.4276 -2.5051 33 1 0.2034 -6.7238 -7.5694 34 1 -2.0291 -7.7597 -7.5504 35 1 -3.3094 -7.8974 -5.4540 36 1 0.7611 -1.9668 -2.0476 37 1 -0.6538 -2.3701 -1.0379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434718313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:39 Heat of formation + Delta-G solvation = -91.717244 kcal Electronic energy + Delta-G solvation = -25913.688380 eV Core-core repulsion = 21824.724680 eV Total energy + Delta-G solvation = -4088.963700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.01204 -40.24715 -38.97750 -37.35557 -36.57196 -34.55982 -34.26676 -32.22144 -30.72373 -30.41435 -29.21885 -27.72581 -25.16301 -23.31303 -23.05708 -22.27057 -19.90855 -19.58605 -18.34756 -17.74638 -17.10880 -16.94485 -16.90624 -15.66247 -15.45583 -15.15022 -14.95926 -14.76236 -14.48723 -14.23073 -13.78723 -13.30170 -13.23769 -12.92129 -12.88499 -12.42117 -12.24741 -11.90946 -11.68491 -11.52795 -11.45955 -11.11493 -11.05851 -10.83200 -10.67903 -10.45980 -10.18039 -9.78256 -9.38622 -9.32586 -9.04370 -8.93655 -8.67842 -8.32067 -7.85368 -6.27673 -4.36180 0.70403 0.78112 1.89066 2.83976 3.19419 3.21891 3.30363 3.33728 3.56967 3.96681 4.24858 4.31952 4.48753 4.74126 4.86180 4.99240 5.02423 5.34668 5.46678 5.66156 5.69262 5.73941 5.75777 5.89687 5.98346 6.05105 6.26505 6.49273 6.68096 6.77453 6.87230 6.92109 7.18556 7.29715 7.51686 7.73931 8.03390 8.38221 8.67548 8.99629 9.29685 9.38563 10.80214 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.003491 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.939782 B = 8018.566135 C = 8475.151798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.115 4.115 12 C 0.100 3.900 13 N -0.624 5.624 14 C 0.722 3.278 15 O -0.581 6.581 16 N -0.704 5.704 17 C 0.140 3.860 18 C 0.120 3.880 19 F -0.124 7.124 20 C -0.148 4.148 21 C -0.078 4.078 22 C -0.120 4.120 23 C -0.005 4.005 24 Cl -0.043 7.043 25 C 0.123 3.877 26 H 0.270 0.730 27 H 0.382 0.618 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.406 0.594 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.065 0.935 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -17.356 -10.022 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.153 4.153 12 C -0.023 4.023 13 N -0.360 5.360 14 C 0.425 3.575 15 O -0.458 6.458 16 N -0.360 5.360 17 C 0.045 3.955 18 C 0.099 3.901 19 F -0.102 7.102 20 C -0.167 4.167 21 C -0.096 4.096 22 C -0.139 4.139 23 C -0.034 4.034 24 Cl -0.014 7.014 25 C 0.002 3.998 26 H 0.080 0.920 27 H 0.233 0.767 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.554 -17.163 -10.315 20.187 hybrid contribution 0.385 1.258 0.260 1.341 sum -2.169 -15.905 -10.055 18.942 Atomic orbital electron populations 1.69706 1.05992 1.27835 1.49640 1.25077 0.95046 0.99784 0.93361 0.86351 0.80066 0.82763 0.77752 1.19585 1.20764 1.20744 1.21523 0.93703 0.90024 1.52295 0.91457 1.19511 0.86522 0.92055 0.81133 1.86105 1.51819 1.56623 1.44781 1.22757 0.97333 0.94989 1.00202 1.22347 0.92840 0.95223 0.91897 1.47936 1.50336 1.13089 1.24664 1.15402 0.80241 0.80641 0.81186 1.90921 1.43852 1.58783 1.52255 1.42401 1.61555 1.09753 1.22316 1.16944 0.92162 0.99980 0.86399 1.17886 0.81823 0.96773 0.93642 1.91546 1.39414 1.82160 1.97066 1.21189 0.97369 1.00997 0.97192 1.20973 0.93171 0.97460 0.98034 1.21050 1.01137 1.01213 0.90488 1.21179 0.91908 1.00851 0.89424 1.98401 1.73278 1.96534 1.33183 1.22929 1.01636 0.76812 0.98463 0.92037 0.76740 0.90386 0.90502 0.91720 0.92505 0.75628 0.83770 0.83810 0.83939 0.91634 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 10.96 55.43 0.61 -23.34 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.06 8.13 -34.44 -0.28 -14.34 16 8 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 9 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 10 O -0.58 -14.59 13.07 -35.23 -0.46 -15.05 16 11 C -0.11 -2.26 6.24 -24.46 -0.15 -2.42 16 12 C 0.10 1.75 6.54 -2.41 -0.02 1.73 16 13 N -0.62 -13.11 3.32 -176.10 -0.59 -13.70 16 14 C 0.72 15.05 8.45 -86.92 -0.73 14.31 16 15 O -0.58 -14.43 16.65 5.28 0.09 -14.34 16 16 N -0.70 -11.31 4.44 -14.13 -0.06 -11.38 16 17 C 0.14 2.06 5.29 -83.53 -0.44 1.62 16 18 C 0.12 1.64 7.31 -39.26 -0.29 1.35 16 19 F -0.12 -1.90 17.08 2.25 0.04 -1.86 16 20 C -0.15 -1.46 10.02 -39.54 -0.40 -1.86 16 21 C -0.08 -0.63 10.04 -39.56 -0.40 -1.03 16 22 C -0.12 -1.14 9.82 -39.57 -0.39 -1.53 16 23 C 0.00 -0.06 6.33 -39.33 -0.25 -0.31 16 24 Cl -0.04 -0.57 28.43 -51.86 -1.47 -2.05 16 25 C 0.12 3.03 5.23 -3.06 -0.02 3.02 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.38 9.81 7.45 45.56 0.34 10.15 16 28 H 0.08 1.49 8.04 -51.93 -0.42 1.08 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.80 7.36 -51.93 -0.38 0.42 16 32 H 0.41 5.42 7.36 -40.82 -0.30 5.12 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.07 1.77 7.81 -51.93 -0.41 1.37 16 37 H 0.06 1.74 7.92 -51.93 -0.41 1.33 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -31.54 336.86 -8.56 -40.09 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -3.24 Total: 12.76 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -3.53 Total: 8.21 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.04 Total: -48.41 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.37 Total: -29.40 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.47 Total: -2.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.54 -8.56 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434718313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.622 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds