Wall clock time and date at job start Tue Mar 31 2020 15:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47161 * 299.99720 * 3 2 1 6 6 H 1.48498 * 109.47090 * 60.00096 * 3 2 1 7 7 C 1.37885 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99669 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64325 * 298.31285 * 9 7 2 11 11 C 1.55161 * 110.87268 * 175.06571 * 9 7 2 12 12 C 1.55127 * 101.48634 * 205.89857 * 11 9 7 13 13 N 1.47431 * 104.72048 * 37.29751 * 12 11 9 14 14 C 1.34772 * 125.64354 * 155.82053 * 13 12 11 15 15 O 1.21593 * 119.99510 * 179.69144 * 14 13 12 16 16 N 1.34775 * 120.00422 * 359.68429 * 14 13 12 17 17 C 1.40137 * 119.99762 * 185.04392 * 16 14 13 18 18 C 1.39040 * 120.08297 * 85.91351 * 17 16 14 19 19 F 1.35101 * 120.04629 * 359.97438 * 18 17 16 20 20 C 1.38296 * 119.90486 * 179.97438 * 18 17 16 21 21 C 1.38301 * 120.06438 * 0.02562 * 20 18 17 22 22 C 1.38232 * 120.16095 * 359.97438 * 21 20 18 23 23 C 1.38281 * 120.10199 * 359.74354 * 22 21 20 24 24 Cl 1.73593 * 120.03784 * 180.27411 * 23 22 21 25 25 C 1.47021 * 108.70357 * 335.54730 * 13 12 11 26 26 H 0.97003 * 119.99659 * 0.02562 * 1 2 3 27 27 H 0.96699 * 113.99875 * 61.68980 * 10 9 7 28 28 H 1.08998 * 111.00034 * 324.13902 * 11 9 7 29 29 H 1.09002 * 110.99865 * 87.98977 * 11 9 7 30 30 H 1.09000 * 110.49923 * 278.45420 * 12 11 9 31 31 H 1.09000 * 110.33928 * 156.05511 * 12 11 9 32 32 H 0.96996 * 120.00171 * 4.76617 * 16 14 13 33 33 H 1.08002 * 119.96652 * 179.97438 * 20 18 17 34 34 H 1.07999 * 119.91540 * 180.02562 * 21 20 18 35 35 H 1.08003 * 119.95032 * 179.97438 * 22 21 20 36 36 H 1.09000 * 109.88092 * 120.70514 * 25 13 12 37 37 H 1.08992 * 109.88325 * 241.71666 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2254 -3.7001 -0.1259 12 6 1.3104 -4.7744 -0.7702 13 7 0.4607 -4.0255 -1.7140 14 6 -0.1466 -4.5394 -2.8019 15 8 -0.8316 -3.8262 -3.5095 16 7 0.0056 -5.8436 -3.1057 17 6 -0.5374 -6.3546 -4.2922 18 6 0.1836 -6.2776 -5.4785 19 9 1.4092 -5.7092 -5.4896 20 6 -0.3557 -6.7835 -6.6472 21 6 -1.6105 -7.3649 -6.6364 22 6 -2.3296 -7.4430 -5.4585 23 6 -1.7945 -6.9445 -4.2849 24 17 -2.6962 -7.0498 -2.8052 25 6 0.3802 -2.6268 -1.2682 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2277 -1.9344 1.2626 28 1 3.0649 -3.4558 -0.7767 29 1 2.5745 -4.0239 0.8547 30 1 0.6974 -5.2592 -0.0104 31 1 1.9098 -5.5125 -1.3031 32 1 0.4944 -6.4276 -2.5051 33 1 0.2034 -6.7238 -7.5694 34 1 -2.0291 -7.7597 -7.5504 35 1 -3.3094 -7.8974 -5.4540 36 1 0.7611 -1.9668 -2.0476 37 1 -0.6538 -2.3701 -1.0379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434718313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:38 Heat of formation + Delta-G solvation = -113.483154 kcal Electronic energy + Delta-G solvation = -25914.632221 eV Core-core repulsion = 21824.724680 eV Total energy + Delta-G solvation = -4089.907541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.06593 -41.65784 -40.18829 -39.00567 -37.53135 -36.14614 -35.85524 -34.24578 -31.99077 -31.54536 -30.46711 -29.49280 -27.02864 -24.73883 -23.96215 -23.48606 -21.51670 -21.29512 -19.66084 -19.07660 -18.91846 -18.12432 -17.94456 -17.21538 -16.76735 -16.63608 -16.34570 -16.20108 -15.93850 -15.48169 -15.01631 -14.81046 -14.73093 -14.60326 -14.24982 -13.90459 -13.53023 -13.37456 -13.17736 -12.88530 -12.79782 -12.57810 -12.42593 -12.37472 -12.26256 -12.12278 -12.09542 -11.50741 -11.20164 -10.75459 -10.68031 -10.32442 -9.97992 -9.81356 -9.57519 -8.27789 -6.43669 -0.18295 -0.07994 0.93550 1.38646 1.42375 1.48998 1.53524 1.95596 2.34584 2.37043 2.82002 2.99126 3.11804 3.75380 3.76984 3.90733 3.99649 4.10616 4.15100 4.17931 4.34311 4.53235 4.60852 4.67477 4.90146 5.00998 5.01516 5.09016 5.14401 5.15393 5.30396 5.34292 5.45558 5.71197 5.72674 5.87351 6.06540 6.62993 6.85032 7.25673 7.33374 7.39620 8.78639 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.003491 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.939782 B = 8018.566135 C = 8475.151798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.068 0.932 9 C 0.235 3.765 10 O -0.585 6.585 11 C -0.109 4.109 12 C 0.104 3.896 13 N -0.630 5.630 14 C 0.721 3.279 15 O -0.629 6.629 16 N -0.684 5.684 17 C 0.102 3.898 18 C 0.091 3.909 19 F -0.142 7.142 20 C -0.139 4.139 21 C -0.057 4.057 22 C -0.112 4.112 23 C -0.022 4.022 24 Cl -0.057 7.057 25 C 0.144 3.856 26 H 0.270 0.730 27 H 0.375 0.625 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.418 0.582 33 H 0.173 0.827 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.029 0.971 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -19.468 -11.586 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.194 3.806 10 O -0.393 6.393 11 C -0.147 4.147 12 C -0.017 4.017 13 N -0.366 5.366 14 C 0.424 3.576 15 O -0.510 6.510 16 N -0.340 5.340 17 C 0.008 3.992 18 C 0.070 3.930 19 F -0.121 7.121 20 C -0.158 4.158 21 C -0.074 4.074 22 C -0.131 4.131 23 C -0.050 4.050 24 Cl -0.028 7.028 25 C 0.020 3.980 26 H 0.079 0.921 27 H 0.224 0.776 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.258 0.742 33 H 0.190 0.810 34 H 0.210 0.790 35 H 0.189 0.811 36 H 0.048 0.952 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.147 -19.353 -11.870 22.804 hybrid contribution 0.204 1.832 0.633 1.949 sum -1.943 -17.520 -11.236 20.904 Atomic orbital electron populations 1.69816 1.07140 1.28412 1.50107 1.25824 0.95791 1.02855 0.93055 0.85420 0.79181 0.78987 0.77542 1.18803 1.21060 1.20193 1.21857 0.93964 0.91300 1.52404 0.91393 1.19702 0.87001 0.93553 0.80317 1.86095 1.51709 1.56260 1.45253 1.22749 0.96809 0.93575 1.01532 1.22513 0.92473 0.94940 0.91813 1.47869 1.51149 1.12121 1.25492 1.15567 0.79629 0.81870 0.80494 1.90869 1.45861 1.60472 1.53753 1.42057 1.60906 1.07913 1.23127 1.17280 0.93638 1.02136 0.86170 1.18282 0.81681 0.98356 0.94700 1.91493 1.40560 1.82807 1.97199 1.21623 0.98062 0.99381 0.96746 1.21556 0.91773 0.95011 0.99100 1.21514 1.02211 0.99740 0.89614 1.21383 0.91460 1.02022 0.90140 1.98392 1.73419 1.96651 1.34336 1.22394 0.99272 0.78537 0.97772 0.92096 0.77583 0.89831 0.88837 0.90675 0.88289 0.74228 0.80960 0.78972 0.81058 0.95248 0.95263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 10.96 21.45 0.24 -50.56 16 2 C 0.03 1.37 5.28 84.66 0.45 1.82 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -29.65 8.13 25.60 0.21 -29.44 16 8 H 0.07 3.52 7.78 -2.91 -0.02 3.50 16 9 C 0.23 11.53 0.85 -10.35 -0.01 11.52 16 10 O -0.59 -29.82 13.07 -148.98 -1.95 -31.76 16 11 C -0.11 -4.19 6.24 32.06 0.20 -3.99 16 12 C 0.10 3.50 6.54 86.93 0.57 4.07 16 13 N -0.63 -26.99 3.32 -829.31 -2.76 -29.75 16 14 C 0.72 30.77 8.45 179.06 1.51 32.28 16 15 O -0.63 -32.54 16.65 -4.01 -0.07 -32.61 16 16 N -0.68 -21.95 4.44 -316.89 -1.41 -23.35 16 17 C 0.10 2.95 5.29 38.16 0.20 3.15 16 18 C 0.09 2.39 7.31 22.48 0.16 2.55 16 19 F -0.14 -4.35 17.08 44.97 0.77 -3.58 16 20 C -0.14 -2.31 10.02 22.30 0.22 -2.09 16 21 C -0.06 -0.66 10.04 22.28 0.22 -0.44 16 22 C -0.11 -1.77 9.82 22.28 0.22 -1.55 16 23 C -0.02 -0.53 6.33 22.43 0.14 -0.38 16 24 Cl -0.06 -1.49 28.43 -2.72 -0.08 -1.57 16 25 C 0.14 7.41 5.23 86.73 0.45 7.86 16 26 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.38 20.03 7.45 -74.06 -0.55 19.47 16 28 H 0.08 3.10 8.04 -2.39 -0.02 3.08 16 29 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.10 2.51 7.36 -2.39 -0.02 2.50 16 32 H 0.42 10.82 7.36 -92.71 -0.68 10.14 16 33 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.19 0.45 8.06 -2.91 -0.02 0.42 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.03 1.68 7.81 -2.39 -0.02 1.66 16 37 H 0.03 1.67 7.92 -2.39 -0.02 1.65 16 Total: -1.00 -72.97 336.86 1.24 -71.73 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.09 Total: 31.31 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 4.56 Total: 25.37 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.93 Total: -103.66 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -2.01 Total: -64.37 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.58 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -72.97 1.24 -71.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434718313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.751 kcal (2) G-P(sol) polarization free energy of solvation -72.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds