Wall clock time and date at job start Tue Mar 31 2020 14:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 S 1.75855 * 125.38154 * 148.79083 * 3 2 1 5 5 C 1.75734 * 91.31187 * 179.97438 * 4 3 2 6 6 C 1.33322 * 110.43735 * 0.02562 * 5 4 3 7 7 C 1.38005 * 125.38733 * 328.78702 * 3 2 1 8 8 C 1.47361 * 123.09246 * 359.97438 * 7 3 2 9 9 O 1.21617 * 120.00188 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99744 * 179.97438 * 8 7 3 11 11 C 1.46507 * 119.99889 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47190 * 180.02562 * 11 10 8 13 13 C 1.38325 * 119.96171 * 269.72558 * 12 11 10 14 14 C 1.38281 * 120.13198 * 179.76518 * 13 12 11 15 15 C 1.38119 * 120.07470 * 0.50815 * 14 13 12 16 16 C 1.38859 * 119.92669 * 359.74804 * 15 14 13 17 17 O 1.35754 * 120.06901 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99863 * 354.48791 * 17 16 15 19 19 H 1.08000 * 120.00146 * 5.05703 * 18 17 16 20 20 C 1.38657 * 119.99535 * 185.05838 * 18 17 16 21 21 N 1.31551 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99478 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47339 * 60.00239 * 22 20 18 24 24 H 1.48507 * 109.46748 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47361 * 299.99765 * 22 20 18 26 26 C 1.38074 * 119.96417 * 90.00187 * 12 11 10 27 27 H 1.07992 * 124.78081 * 179.73099 * 5 4 3 28 28 H 1.08004 * 122.39567 * 179.97438 * 6 5 4 29 29 H 0.96995 * 120.00189 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.46957 * 300.00368 * 11 10 8 31 31 H 1.09001 * 109.47027 * 60.00417 * 11 10 8 32 32 H 1.08001 * 119.93474 * 359.97438 * 13 12 11 33 33 H 1.08004 * 119.96647 * 180.25626 * 14 13 12 34 34 H 1.07996 * 120.04064 * 179.72308 * 15 14 13 35 35 H 0.97004 * 120.00128 * 180.02562 * 21 20 18 36 36 H 1.07994 * 120.03736 * 359.95094 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5857 1.2274 -0.7429 5 6 5.0418 0.3864 -0.2321 6 6 4.7281 -0.7220 0.4389 7 6 3.3677 -0.9612 0.5830 8 6 2.8276 -2.1336 1.2939 9 8 1.6248 -2.2876 1.3869 10 7 3.6667 -3.0358 1.8402 11 6 3.1298 -4.2012 2.5475 12 6 4.2677 -5.0462 3.0595 13 6 4.7850 -6.0589 2.2719 14 6 5.8323 -6.8333 2.7362 15 6 6.3582 -6.6045 3.9927 16 6 5.8376 -5.5921 4.7878 17 8 6.3519 -5.3651 6.0235 18 6 7.2885 -6.2288 6.4647 19 1 7.6562 -7.0066 5.8119 20 6 7.7795 -6.1183 7.7567 21 7 7.3320 -5.1706 8.5518 22 14 9.0777 -7.3145 8.3678 23 1 10.2881 -7.2103 7.5139 24 1 9.4330 -6.9847 9.7716 25 1 8.5444 -8.6990 8.3039 26 6 4.7890 -4.8125 4.3165 27 1 6.0488 0.7181 -0.4374 28 1 5.4783 -1.3865 0.8417 29 1 4.6260 -2.9133 1.7657 30 1 2.5193 -3.8674 3.3865 31 1 2.5178 -4.7905 1.8646 32 1 4.3723 -6.2429 1.2909 33 1 6.2368 -7.6205 2.1174 34 1 7.1732 -7.2125 4.3566 35 1 7.6758 -5.0931 9.4555 36 1 4.3822 -4.0241 4.9324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456288721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:15 Heat of formation + Delta-G solvation = 30.625330 kcal Electronic energy + Delta-G solvation = -23106.201752 eV Core-core repulsion = 19455.356154 eV Total energy + Delta-G solvation = -3650.845597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.33271 -39.16891 -37.67985 -36.80019 -36.49848 -34.64359 -32.38003 -30.99211 -30.53643 -29.23230 -27.08447 -25.51735 -24.65518 -22.02693 -21.76225 -21.07893 -20.77433 -19.46848 -17.87771 -17.28778 -16.74726 -16.34137 -15.63159 -15.58462 -15.15649 -14.79463 -14.67659 -14.41901 -14.11599 -13.90519 -13.75713 -13.64235 -13.48823 -13.14956 -12.86141 -12.66486 -12.49490 -12.27418 -12.19336 -11.71937 -11.59621 -11.42816 -10.98072 -10.87916 -10.76337 -10.53231 -10.18160 -9.46232 -9.37162 -9.24864 -9.00578 -8.92744 -8.31037 -7.38215 -6.52896 -4.12702 -0.23965 0.62540 1.21245 1.53697 1.83003 2.21449 2.64739 2.81293 3.07194 3.08702 3.12058 3.21844 3.27124 3.69890 3.89185 4.32558 4.47316 4.66500 4.72573 4.89275 5.02669 5.20363 5.31265 5.47465 5.49029 5.60070 5.67971 5.79125 5.86017 6.02332 6.19925 6.31371 6.49800 6.76157 6.94247 7.12547 7.21869 7.25742 7.30496 7.39553 7.65639 7.90809 8.04183 8.92246 9.60191 10.64625 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002306 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.955815 B =12137.671131 C =12579.294450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C 0.278 3.722 3 C -0.089 4.089 4 S 0.221 5.779 5 C -0.196 4.196 6 C -0.117 4.117 7 C -0.085 4.085 8 C 0.565 3.435 9 O -0.529 6.529 10 N -0.707 5.707 11 C 0.168 3.832 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.150 3.850 17 O -0.175 6.175 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.041 3.959 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.170 4.170 27 H 0.182 0.818 28 H 0.159 0.841 29 H 0.404 0.596 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.272 0.728 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 9.444 -18.018 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.057 5.057 2 C -0.038 4.038 3 C -0.212 4.212 4 S 0.488 5.512 5 C -0.334 4.334 6 C -0.146 4.146 7 C -0.106 4.106 8 C 0.349 3.651 9 O -0.407 6.407 10 N -0.359 5.359 11 C 0.046 3.954 12 C -0.075 4.075 13 C -0.214 4.214 14 C -0.094 4.094 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.078 6.078 18 C -0.471 4.471 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.190 4.190 27 H 0.200 0.800 28 H 0.176 0.824 29 H 0.240 0.760 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.150 10.953 -18.336 21.589 hybrid contribution 2.064 -2.003 1.143 3.095 sum -1.086 8.949 -17.193 19.413 Atomic orbital electron populations 1.81215 1.11018 1.06620 1.06877 1.23899 0.90653 0.94522 0.94719 1.20418 0.89851 1.01910 1.08982 1.84346 0.94370 1.21663 1.50859 1.25892 1.02887 0.99633 1.04941 1.20073 0.94661 0.98793 1.01075 1.19520 0.93031 0.96458 1.01638 1.17611 0.86373 0.82007 0.79122 1.90855 1.14460 1.76043 1.59318 1.45970 1.10244 1.24045 1.55591 1.20221 0.94041 0.84901 0.96285 1.19230 0.96990 0.97105 0.94222 1.20484 1.01072 0.99788 1.00081 1.20748 0.95589 0.97969 0.95088 1.21250 1.04848 1.02559 0.95803 1.19322 0.91635 0.92708 0.86726 1.83982 1.50105 1.48335 1.25410 1.21276 1.16617 1.11276 0.97883 0.89064 1.25295 0.98579 0.97702 0.94826 1.70022 1.41168 1.30651 1.07631 0.85782 0.79775 0.79617 0.78279 1.19465 1.20227 1.19450 1.20092 0.98936 1.03424 0.96547 0.80024 0.82351 0.75984 0.90488 0.90572 0.87445 0.87255 0.85448 0.91846 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.82 18.54 41.84 0.78 -5.05 16 2 C 0.28 3.67 13.95 -22.47 -0.31 3.35 16 3 C -0.09 -0.90 6.36 -37.74 -0.24 -1.14 16 4 S 0.22 1.30 23.27 -107.50 -2.50 -1.20 16 5 C -0.20 -0.95 11.16 29.02 0.32 -0.63 16 6 C -0.12 -0.79 9.61 -41.06 -0.39 -1.19 16 7 C -0.08 -0.85 5.86 -106.03 -0.62 -1.47 16 8 C 0.56 7.43 7.79 -12.55 -0.10 7.33 16 9 O -0.53 -9.02 15.19 5.26 0.08 -8.94 16 10 N -0.71 -8.47 5.52 -62.58 -0.35 -8.82 16 11 C 0.17 2.32 5.80 -5.19 -0.03 2.29 16 12 C -0.07 -1.18 5.25 -104.65 -0.55 -1.73 16 13 C -0.19 -2.98 9.70 -39.53 -0.38 -3.37 16 14 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 15 C -0.23 -4.50 9.17 -39.40 -0.36 -4.86 16 16 C 0.15 3.36 6.65 -39.10 -0.26 3.10 16 17 O -0.18 -4.74 9.76 0.05 0.00 -4.74 16 18 C -0.39 -10.53 9.49 30.89 0.29 -10.24 16 19 H 0.09 2.23 5.20 -52.49 -0.27 1.96 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.46 13.67 55.48 0.76 -23.70 16 22 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.17 -3.27 9.65 -39.39 -0.38 -3.65 16 27 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 28 H 0.16 0.80 6.88 -52.48 -0.36 0.44 16 29 H 0.40 4.00 6.88 -40.82 -0.28 3.72 16 30 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.08 1.02 8.08 -51.93 -0.42 0.61 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 34 H 0.13 2.56 5.64 -52.49 -0.30 2.27 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -33.12 344.07 -7.45 -40.58 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.88 Total: 4.85 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.51 Total: -12.85 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 1.19 Total: -37.57 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.08 Total: -13.69 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.50 Total: -1.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.12 -7.45 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456288721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.200 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds