Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 S 1.75855 * 125.38154 * 148.79083 * 3 2 1 5 5 C 1.75734 * 91.31187 * 179.97438 * 4 3 2 6 6 C 1.33322 * 110.43735 * 0.02562 * 5 4 3 7 7 C 1.38005 * 125.38733 * 328.78702 * 3 2 1 8 8 C 1.47361 * 123.09246 * 359.97438 * 7 3 2 9 9 O 1.21617 * 120.00188 * 0.02562 * 8 7 3 10 10 N 1.34774 * 119.99744 * 179.97438 * 8 7 3 11 11 C 1.46507 * 119.99889 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47190 * 180.02562 * 11 10 8 13 13 C 1.38325 * 119.96171 * 269.72558 * 12 11 10 14 14 C 1.38281 * 120.13198 * 179.76518 * 13 12 11 15 15 C 1.38119 * 120.07470 * 0.50815 * 14 13 12 16 16 C 1.38859 * 119.92669 * 359.74804 * 15 14 13 17 17 O 1.35754 * 120.06901 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99863 * 354.48791 * 17 16 15 19 19 H 1.08000 * 120.00146 * 5.05703 * 18 17 16 20 20 C 1.38657 * 119.99535 * 185.05838 * 18 17 16 21 21 N 1.31551 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99478 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47339 * 60.00239 * 22 20 18 24 24 H 1.48507 * 109.46748 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47361 * 299.99765 * 22 20 18 26 26 C 1.38074 * 119.96417 * 90.00187 * 12 11 10 27 27 H 1.07992 * 124.78081 * 179.73099 * 5 4 3 28 28 H 1.08004 * 122.39567 * 179.97438 * 6 5 4 29 29 H 0.96995 * 120.00189 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.46957 * 300.00368 * 11 10 8 31 31 H 1.09001 * 109.47027 * 60.00417 * 11 10 8 32 32 H 1.08001 * 119.93474 * 359.97438 * 13 12 11 33 33 H 1.08004 * 119.96647 * 180.25626 * 14 13 12 34 34 H 1.07996 * 120.04064 * 179.72308 * 15 14 13 35 35 H 0.97004 * 120.00128 * 180.02562 * 21 20 18 36 36 H 1.07994 * 120.03736 * 359.95094 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5857 1.2274 -0.7429 5 6 5.0418 0.3864 -0.2321 6 6 4.7281 -0.7220 0.4389 7 6 3.3677 -0.9612 0.5830 8 6 2.8276 -2.1336 1.2939 9 8 1.6248 -2.2876 1.3869 10 7 3.6667 -3.0358 1.8402 11 6 3.1298 -4.2012 2.5475 12 6 4.2677 -5.0462 3.0595 13 6 4.7850 -6.0589 2.2719 14 6 5.8323 -6.8333 2.7362 15 6 6.3582 -6.6045 3.9927 16 6 5.8376 -5.5921 4.7878 17 8 6.3519 -5.3651 6.0235 18 6 7.2885 -6.2288 6.4647 19 1 7.6562 -7.0066 5.8119 20 6 7.7795 -6.1183 7.7567 21 7 7.3320 -5.1706 8.5518 22 14 9.0777 -7.3145 8.3678 23 1 10.2881 -7.2103 7.5139 24 1 9.4330 -6.9847 9.7716 25 1 8.5444 -8.6990 8.3039 26 6 4.7890 -4.8125 4.3165 27 1 6.0488 0.7181 -0.4374 28 1 5.4783 -1.3865 0.8417 29 1 4.6260 -2.9133 1.7657 30 1 2.5193 -3.8674 3.3865 31 1 2.5178 -4.7905 1.8646 32 1 4.3723 -6.2429 1.2909 33 1 6.2368 -7.6205 2.1174 34 1 7.1732 -7.2125 4.3566 35 1 7.6758 -5.0931 9.4555 36 1 4.3822 -4.0241 4.9324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456288721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = 8.594115 kcal Electronic energy + Delta-G solvation = -23107.157097 eV Core-core repulsion = 19455.356154 eV Total energy + Delta-G solvation = -3651.800942 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34361 -40.70727 -38.71575 -38.19206 -37.44721 -35.86000 -34.26962 -32.32029 -31.20239 -30.77676 -28.20949 -27.27546 -25.75570 -23.25323 -22.81110 -22.43452 -21.66523 -20.42428 -19.47205 -18.81322 -17.74178 -17.27877 -16.85179 -16.64067 -16.43824 -16.15096 -16.07907 -15.56087 -15.37763 -15.19429 -14.87236 -14.69830 -14.54490 -14.32008 -14.05772 -13.92627 -13.75643 -13.49357 -13.26580 -13.04572 -12.99813 -12.51913 -12.37666 -12.25451 -12.13724 -12.10654 -11.29378 -11.17635 -10.78387 -10.29124 -9.93740 -9.75164 -9.63464 -9.01558 -8.45193 -6.13649 -0.94256 0.01738 0.39284 0.72334 0.73644 0.92208 1.37440 1.47344 1.53205 1.68574 1.83323 2.17906 2.19632 2.36773 2.82968 2.91605 3.17309 3.41371 3.63358 3.81842 4.05287 4.11173 4.23865 4.32079 4.41826 4.54518 4.66328 4.75033 4.80714 4.99964 5.03101 5.08976 5.13538 5.25323 5.27926 5.64110 5.72333 5.73769 6.03249 6.18046 6.31296 6.42522 6.99754 7.05711 7.80118 8.77601 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002306 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.955815 B =12137.671131 C =12579.294450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.294 3.706 3 C -0.134 4.134 4 S 0.288 5.712 5 C -0.169 4.169 6 C -0.130 4.130 7 C -0.089 4.089 8 C 0.562 3.438 9 O -0.576 6.576 10 N -0.697 5.697 11 C 0.173 3.827 12 C -0.059 4.059 13 C -0.166 4.166 14 C -0.068 4.068 15 C -0.233 4.233 16 C 0.113 3.887 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.016 2.984 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.180 4.180 27 H 0.222 0.778 28 H 0.177 0.823 29 H 0.417 0.583 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.272 0.728 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 9.102 -21.429 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.021 4.021 3 C -0.256 4.256 4 S 0.555 5.445 5 C -0.307 4.307 6 C -0.157 4.157 7 C -0.113 4.113 8 C 0.348 3.652 9 O -0.457 6.457 10 N -0.349 5.349 11 C 0.050 3.950 12 C -0.059 4.059 13 C -0.185 4.185 14 C -0.086 4.086 15 C -0.252 4.252 16 C 0.063 3.937 17 O -0.138 6.138 18 C -0.488 4.488 19 H 0.122 0.878 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.836 3.164 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.199 4.199 27 H 0.239 0.761 28 H 0.194 0.806 29 H 0.255 0.745 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.001 10.613 -21.820 24.285 hybrid contribution 1.298 -1.808 1.835 2.885 sum 0.297 8.805 -19.985 21.841 Atomic orbital electron populations 1.81193 1.12710 1.08653 1.09159 1.24481 0.91541 0.92958 0.93160 1.20713 0.88701 1.04522 1.11702 1.84227 0.93084 1.18962 1.48187 1.26443 1.04294 0.97948 1.01972 1.20167 0.93172 1.00188 1.02201 1.19414 0.94570 0.95333 1.01948 1.18100 0.85780 0.82647 0.78631 1.90837 1.16485 1.77186 1.61158 1.45800 1.10841 1.23336 1.54906 1.20080 0.93111 0.85450 0.96344 1.19369 0.96614 0.97230 0.92724 1.20995 0.99123 0.97404 1.01009 1.21157 0.95156 0.98567 0.93749 1.21385 1.04914 1.01839 0.97110 1.19845 0.93080 0.94662 0.86150 1.83950 1.51915 1.50033 1.27951 1.21780 1.16810 1.11651 0.98572 0.87847 1.26559 1.01022 0.99640 0.94784 1.70177 1.43979 1.33593 1.08186 0.84676 0.76944 0.77144 0.77666 1.17872 1.19988 1.18316 1.20210 0.98677 1.03125 0.97927 0.76113 0.80585 0.74545 0.91823 0.89331 0.83378 0.83322 0.86142 0.91913 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.13 18.54 19.01 0.35 -13.78 16 2 C 0.29 7.92 13.95 88.33 1.23 9.15 16 3 C -0.13 -2.54 6.36 23.46 0.15 -2.39 16 4 S 0.29 2.41 23.27 -56.49 -1.31 1.10 16 5 C -0.17 -0.82 11.16 66.71 0.74 -0.08 16 6 C -0.13 -1.30 9.61 21.31 0.20 -1.09 16 7 C -0.09 -1.65 5.86 -20.78 -0.12 -1.78 16 8 C 0.56 14.40 7.79 86.64 0.67 15.07 16 9 O -0.58 -19.98 15.19 -4.08 -0.06 -20.04 16 10 N -0.70 -15.55 5.52 -470.15 -2.59 -18.15 16 11 C 0.17 4.53 5.80 85.63 0.50 5.02 16 12 C -0.06 -1.74 5.25 -19.88 -0.10 -1.85 16 13 C -0.17 -4.37 9.70 22.30 0.22 -4.16 16 14 C -0.07 -2.00 10.04 22.25 0.22 -1.78 16 15 C -0.23 -9.13 9.17 22.39 0.21 -8.92 16 16 C 0.11 5.20 6.65 22.58 0.15 5.35 16 17 O -0.23 -13.31 9.76 -22.74 -0.22 -13.54 16 18 C -0.41 -22.96 9.49 67.92 0.64 -22.32 16 19 H 0.10 5.21 5.20 -2.91 -0.02 5.19 16 20 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 21 N -0.92 -55.34 13.67 21.61 0.30 -55.05 16 22 Si 1.02 41.29 29.55 68.60 2.03 43.32 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 24 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.18 -7.00 9.65 22.39 0.22 -6.79 16 27 H 0.22 -0.61 8.06 -2.91 -0.02 -0.63 16 28 H 0.18 1.08 6.88 -2.91 -0.02 1.06 16 29 H 0.42 7.20 6.88 -92.71 -0.64 6.56 16 30 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.12 4.82 5.64 -2.91 -0.02 4.81 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -80.45 344.07 4.41 -76.04 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.53 Total: 17.41 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 5.40 Total: -17.31 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.95 Total: -86.97 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.28 Total: -33.58 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -80.45 4.41 -76.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456288721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.634 kcal (2) G-P(sol) polarization free energy of solvation -80.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds