Wall clock time and date at job start Tue Mar 31 2020 15:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00021 * 2 1 4 4 H 1.48496 * 109.47757 * 274.99838 * 3 2 1 5 5 H 1.48499 * 109.47245 * 35.00253 * 3 2 1 6 6 H 1.48503 * 109.46906 * 154.99756 * 3 2 1 7 7 C 1.37877 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99519 * 174.96507 * 7 2 1 9 9 C 1.50693 * 120.00110 * 355.23823 * 7 2 1 10 10 O 1.42901 * 110.88567 * 64.01719 * 9 7 2 11 11 C 1.55159 * 111.00225 * 187.89730 * 9 7 2 12 12 C 1.54325 * 102.94077 * 153.57838 * 11 9 7 13 13 N 1.47021 * 107.26996 * 337.80640 * 12 11 9 14 14 C 1.34777 * 125.64457 * 178.99641 * 13 12 11 15 15 O 1.21597 * 119.99670 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00638 * 359.97438 * 14 13 12 17 17 C 1.40071 * 120.00378 * 185.80780 * 16 14 13 18 18 C 1.38791 * 120.07206 * 33.77645 * 17 16 14 19 19 C 1.38252 * 119.94505 * 180.02562 * 18 17 16 20 20 Cl 1.73595 * 119.95608 * 179.97438 * 19 18 17 21 21 C 1.38385 * 120.08253 * 0.02562 * 19 18 17 22 22 C 1.38262 * 120.14477 * 359.95512 * 21 19 18 23 23 C 1.38308 * 120.05192 * 359.76764 * 22 21 19 24 24 F 1.35097 * 120.03870 * 180.27017 * 23 22 21 25 25 C 1.47465 * 108.72402 * 358.97356 * 13 12 11 26 26 H 0.97000 * 119.99471 * 359.97438 * 1 2 3 27 27 H 0.96694 * 114.00064 * 295.63498 * 10 9 7 28 28 H 1.09002 * 110.71958 * 271.93557 * 11 9 7 29 29 H 1.08997 * 110.72084 * 35.21367 * 11 9 7 30 30 H 1.08999 * 109.88388 * 97.22564 * 12 11 9 31 31 H 1.08998 * 109.88076 * 218.38651 * 12 11 9 32 32 H 0.97003 * 119.99304 * 5.81105 * 16 14 13 33 33 H 1.08003 * 120.02221 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.92841 * 179.97438 * 21 19 18 35 35 H 1.07997 * 119.97392 * 180.02562 * 22 21 19 36 36 H 1.08995 * 110.34969 * 265.25652 * 25 13 12 37 37 H 1.09002 * 110.40508 * 142.91631 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1075 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1958 -0.0826 9 6 1.2549 -2.4969 0.1072 10 8 0.4095 -2.6936 -1.0280 11 6 2.2329 -3.6881 0.2854 12 6 1.3753 -4.7306 1.0334 13 7 0.2862 -4.0021 1.7003 14 6 -0.6917 -4.5584 2.4424 15 8 -1.5446 -3.8556 2.9496 16 7 -0.7245 -5.8937 2.6224 17 6 -1.8052 -6.4843 3.2897 18 6 -3.0791 -5.9489 3.1601 19 6 -4.1438 -6.5335 3.8203 20 17 -5.7372 -5.8637 3.6590 21 6 -3.9408 -7.6514 4.6104 22 6 -2.6733 -8.1879 4.7416 23 6 -1.6050 -7.6111 4.0792 24 9 -0.3676 -8.1388 4.2033 25 6 0.4409 -2.5620 1.4236 26 1 -0.4849 0.8401 0.0004 27 1 -0.2998 -2.0413 -1.1080 28 1 2.5512 -4.0740 -0.6830 29 1 3.0934 -3.3940 0.8863 30 1 0.9618 -5.4479 0.3245 31 1 1.9839 -5.2479 1.7750 32 1 0.0005 -6.4458 2.2898 33 1 -3.2383 -5.0757 2.5447 34 1 -4.7742 -8.1058 5.1254 35 1 -2.5180 -9.0606 5.3586 36 1 0.9880 -2.0773 2.2322 37 1 -0.5343 -2.0937 1.2901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475862177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:41 Heat of formation + Delta-G solvation = -95.019867 kcal Electronic energy + Delta-G solvation = -25590.138718 eV Core-core repulsion = 21501.031805 eV Total energy + Delta-G solvation = -4089.106913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.09423 -40.50437 -38.96890 -37.50840 -36.52713 -34.64748 -34.32341 -32.28398 -30.87396 -30.37160 -29.26753 -27.83200 -25.27418 -23.68226 -22.88931 -22.25924 -19.81758 -19.75607 -18.55964 -17.60892 -17.18405 -17.11247 -16.57154 -15.83025 -15.59104 -15.33654 -15.08824 -14.60365 -14.44953 -14.15887 -13.85911 -13.46255 -13.26207 -13.13229 -12.88786 -12.71107 -12.27329 -11.93656 -11.72436 -11.64902 -11.43038 -11.12418 -11.08250 -10.91734 -10.71801 -10.49540 -10.45629 -10.24969 -9.86166 -9.45345 -8.90195 -8.75768 -8.45358 -8.31653 -7.86236 -6.32883 -4.41766 0.74949 0.94937 1.94098 2.69126 3.12372 3.18446 3.26818 3.29203 3.55194 3.94556 4.10585 4.24711 4.44939 4.78548 4.93914 4.97853 5.16807 5.27950 5.41879 5.52628 5.65062 5.75447 5.84217 5.90515 5.97431 6.06119 6.15919 6.40576 6.59587 6.70784 6.74147 6.76183 7.04602 7.21657 7.36776 7.69319 7.97537 8.19096 8.61716 8.76158 9.24330 9.34860 10.74738 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.003213 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.280537 B = 8711.597152 C = 9785.525431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.115 4.115 12 C 0.099 3.901 13 N -0.619 5.619 14 C 0.715 3.285 15 O -0.575 6.575 16 N -0.686 5.686 17 C 0.167 3.833 18 C -0.089 4.089 19 C -0.023 4.023 20 Cl -0.060 7.060 21 C -0.109 4.109 22 C -0.120 4.120 23 C 0.065 3.935 24 F -0.134 7.134 25 C 0.111 3.889 26 H 0.271 0.729 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.410 0.590 33 H 0.159 0.841 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.061 0.939 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -15.867 7.142 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.354 5.354 14 C 0.417 3.583 15 O -0.452 6.452 16 N -0.335 5.335 17 C 0.068 3.932 18 C -0.111 4.111 19 C -0.050 4.050 20 Cl -0.031 7.031 21 C -0.129 4.129 22 C -0.140 4.140 23 C 0.042 3.958 24 F -0.113 7.113 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.232 0.768 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.313 -15.620 7.374 18.071 hybrid contribution 0.573 1.061 0.017 1.206 sum -4.741 -14.558 7.391 17.001 Atomic orbital electron populations 1.69697 1.06037 1.28008 1.49170 1.25074 0.95020 0.99794 0.93251 0.86396 0.79891 0.82496 0.78192 1.20461 1.20906 1.19621 1.21434 0.93974 0.90003 1.52324 0.91445 1.19646 0.86218 0.91510 0.81803 1.86110 1.47125 1.57611 1.48275 1.22598 0.97723 0.95376 0.99597 1.22057 0.88886 0.95979 0.95512 1.48013 1.26308 1.10823 1.50265 1.15467 0.82325 0.80605 0.79896 1.90934 1.40114 1.60462 1.53666 1.42674 1.23335 1.07259 1.60186 1.17312 0.87898 0.93188 0.94786 1.21058 0.88565 1.01200 1.00232 1.20717 0.86956 0.96446 1.00899 1.98382 1.22795 1.85062 1.96856 1.20807 0.97281 0.95364 0.99456 1.20846 0.90944 1.01450 1.00750 1.17483 0.80888 0.96614 1.00768 1.91490 1.39537 1.85656 1.94629 1.23275 1.02916 0.75498 0.99306 0.91935 0.76807 0.90544 0.90197 0.92213 0.92743 0.75404 0.82347 0.83988 0.83530 0.92033 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.23 10.75 55.43 0.60 -22.64 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.54 -13.61 8.27 -34.44 -0.28 -13.89 16 8 H 0.07 1.67 7.80 -52.48 -0.41 1.26 16 9 C 0.25 5.77 0.87 -89.63 -0.08 5.69 16 10 O -0.58 -14.30 13.16 -35.23 -0.46 -14.77 16 11 C -0.12 -2.15 6.13 -24.89 -0.15 -2.31 16 12 C 0.10 1.62 6.16 -3.06 -0.02 1.60 16 13 N -0.62 -12.18 3.33 -176.21 -0.59 -12.76 16 14 C 0.71 13.88 8.22 -86.92 -0.71 13.16 16 15 O -0.57 -12.99 14.34 5.28 0.08 -12.91 16 16 N -0.69 -10.50 5.19 -14.17 -0.07 -10.58 16 17 C 0.17 2.39 6.28 -83.59 -0.52 1.87 16 18 C -0.09 -1.31 8.43 -39.37 -0.33 -1.65 16 19 C -0.02 -0.28 6.32 -39.52 -0.25 -0.53 16 20 Cl -0.06 -0.71 28.95 -51.86 -1.50 -2.21 16 21 C -0.11 -1.06 9.82 -39.52 -0.39 -1.44 16 22 C -0.12 -1.15 10.02 -39.55 -0.40 -1.54 16 23 C 0.07 0.78 7.31 -39.26 -0.29 0.50 16 24 F -0.13 -1.62 16.94 2.25 0.04 -1.58 16 25 C 0.11 2.57 5.38 -2.51 -0.01 2.56 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.38 9.68 7.56 45.56 0.34 10.03 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.41 5.26 7.64 -40.82 -0.31 4.94 16 33 H 0.16 2.72 6.47 -52.48 -0.34 2.38 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.06 1.47 8.03 -51.93 -0.42 1.06 16 37 H 0.09 2.29 7.37 -51.93 -0.38 1.90 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -28.37 333.73 -8.62 -36.99 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -3.18 Total: 14.71 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -3.53 Total: 5.77 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.06 Total: -45.98 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.39 Total: -27.68 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.37 -8.62 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475862177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.028 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds