Wall clock time and date at job start Tue Mar 31 2020 15:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00021 * 2 1 4 4 H 1.48496 * 109.47757 * 274.99838 * 3 2 1 5 5 H 1.48499 * 109.47245 * 35.00253 * 3 2 1 6 6 H 1.48503 * 109.46906 * 154.99756 * 3 2 1 7 7 C 1.37877 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99519 * 174.96507 * 7 2 1 9 9 C 1.50693 * 120.00110 * 355.23823 * 7 2 1 10 10 O 1.42901 * 110.88567 * 64.01719 * 9 7 2 11 11 C 1.55159 * 111.00225 * 187.89730 * 9 7 2 12 12 C 1.54325 * 102.94077 * 153.57838 * 11 9 7 13 13 N 1.47021 * 107.26996 * 337.80640 * 12 11 9 14 14 C 1.34777 * 125.64457 * 178.99641 * 13 12 11 15 15 O 1.21597 * 119.99670 * 179.97438 * 14 13 12 16 16 N 1.34774 * 120.00638 * 359.97438 * 14 13 12 17 17 C 1.40071 * 120.00378 * 185.80780 * 16 14 13 18 18 C 1.38791 * 120.07206 * 33.77645 * 17 16 14 19 19 C 1.38252 * 119.94505 * 180.02562 * 18 17 16 20 20 Cl 1.73595 * 119.95608 * 179.97438 * 19 18 17 21 21 C 1.38385 * 120.08253 * 0.02562 * 19 18 17 22 22 C 1.38262 * 120.14477 * 359.95512 * 21 19 18 23 23 C 1.38308 * 120.05192 * 359.76764 * 22 21 19 24 24 F 1.35097 * 120.03870 * 180.27017 * 23 22 21 25 25 C 1.47465 * 108.72402 * 358.97356 * 13 12 11 26 26 H 0.97000 * 119.99471 * 359.97438 * 1 2 3 27 27 H 0.96694 * 114.00064 * 295.63498 * 10 9 7 28 28 H 1.09002 * 110.71958 * 271.93557 * 11 9 7 29 29 H 1.08997 * 110.72084 * 35.21367 * 11 9 7 30 30 H 1.08999 * 109.88388 * 97.22564 * 12 11 9 31 31 H 1.08998 * 109.88076 * 218.38651 * 12 11 9 32 32 H 0.97003 * 119.99304 * 5.81105 * 16 14 13 33 33 H 1.08003 * 120.02221 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.92841 * 179.97438 * 21 19 18 35 35 H 1.07997 * 119.97392 * 180.02562 * 22 21 19 36 36 H 1.08995 * 110.34969 * 265.25652 * 25 13 12 37 37 H 1.09002 * 110.40508 * 142.91631 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1075 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1958 -0.0826 9 6 1.2549 -2.4969 0.1072 10 8 0.4095 -2.6936 -1.0280 11 6 2.2329 -3.6881 0.2854 12 6 1.3753 -4.7306 1.0334 13 7 0.2862 -4.0021 1.7003 14 6 -0.6917 -4.5584 2.4424 15 8 -1.5446 -3.8556 2.9496 16 7 -0.7245 -5.8937 2.6224 17 6 -1.8052 -6.4843 3.2897 18 6 -3.0791 -5.9489 3.1601 19 6 -4.1438 -6.5335 3.8203 20 17 -5.7372 -5.8637 3.6590 21 6 -3.9408 -7.6514 4.6104 22 6 -2.6733 -8.1879 4.7416 23 6 -1.6050 -7.6111 4.0792 24 9 -0.3676 -8.1388 4.2033 25 6 0.4409 -2.5620 1.4236 26 1 -0.4849 0.8401 0.0004 27 1 -0.2998 -2.0413 -1.1080 28 1 2.5512 -4.0740 -0.6830 29 1 3.0934 -3.3940 0.8863 30 1 0.9618 -5.4479 0.3245 31 1 1.9839 -5.2479 1.7750 32 1 0.0005 -6.4458 2.2898 33 1 -3.2383 -5.0757 2.5447 34 1 -4.7742 -8.1058 5.1254 35 1 -2.5180 -9.0606 5.3586 36 1 0.9880 -2.0773 2.2322 37 1 -0.5343 -2.0937 1.2901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475862177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:40 Heat of formation + Delta-G solvation = -113.763473 kcal Electronic energy + Delta-G solvation = -25590.951502 eV Core-core repulsion = 21501.031805 eV Total energy + Delta-G solvation = -4089.919697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.02607 -41.85904 -40.19045 -39.02268 -37.51837 -36.16047 -35.82924 -34.24544 -32.19426 -31.50519 -30.46187 -29.50910 -27.05289 -24.95580 -24.05981 -23.40949 -21.53257 -21.15699 -19.80534 -19.05542 -18.75146 -18.27035 -17.63083 -17.10966 -16.91646 -16.72293 -16.59316 -16.24116 -15.86799 -15.27885 -15.11612 -14.82657 -14.66821 -14.42038 -14.33494 -13.88590 -13.59744 -13.48965 -13.37197 -12.91363 -12.86717 -12.61296 -12.50200 -12.36619 -12.23171 -12.11413 -12.05516 -11.56559 -11.37102 -11.22178 -10.67784 -10.32625 -9.89837 -9.66397 -9.20653 -8.26215 -6.42121 -0.19859 0.00394 0.99577 1.34254 1.43062 1.44897 1.54206 1.85843 2.37419 2.39942 2.77335 3.00664 3.00964 3.59632 3.74907 3.92671 3.95524 4.06161 4.14218 4.23373 4.29199 4.53808 4.59168 4.70889 4.82938 4.95180 5.01200 5.05510 5.08011 5.16439 5.18893 5.31862 5.44898 5.66475 5.74510 5.86310 6.08127 6.63768 6.77611 7.25800 7.28246 7.35741 8.79487 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.003213 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.280537 B = 8711.597152 C = 9785.525431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.109 4.109 12 C 0.100 3.900 13 N -0.625 5.625 14 C 0.712 3.288 15 O -0.616 6.616 16 N -0.672 5.672 17 C 0.137 3.863 18 C -0.111 4.111 19 C -0.031 4.031 20 Cl -0.061 7.061 21 C -0.090 4.090 22 C -0.102 4.102 23 C 0.069 3.931 24 F -0.132 7.132 25 C 0.128 3.872 26 H 0.269 0.731 27 H 0.373 0.627 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.422 0.578 33 H 0.123 0.877 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.044 0.956 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -18.605 8.465 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.021 4.021 13 N -0.360 5.360 14 C 0.415 3.585 15 O -0.496 6.496 16 N -0.321 5.321 17 C 0.040 3.960 18 C -0.132 4.132 19 C -0.058 4.058 20 Cl -0.032 7.032 21 C -0.109 4.109 22 C -0.121 4.121 23 C 0.046 3.954 24 F -0.111 7.111 25 C 0.005 3.995 26 H 0.078 0.922 27 H 0.222 0.778 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.261 0.739 33 H 0.141 0.859 34 H 0.196 0.804 35 H 0.206 0.794 36 H 0.063 0.937 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.515 -18.430 8.693 20.872 hybrid contribution 0.258 1.834 -0.352 1.886 sum -4.256 -16.596 8.342 19.056 Atomic orbital electron populations 1.69819 1.07204 1.28400 1.49866 1.25807 0.95688 1.02785 0.93057 0.85483 0.78942 0.78838 0.78042 1.20218 1.21208 1.18765 1.21783 0.94294 0.91201 1.52138 0.91205 1.19883 0.86772 0.93077 0.81097 1.86101 1.47031 1.57254 1.49103 1.22597 0.97306 0.93991 1.00813 1.22243 0.88046 0.95301 0.96545 1.47915 1.27482 1.09756 1.50827 1.15587 0.81615 0.81787 0.79510 1.90902 1.41550 1.61910 1.55229 1.42339 1.24084 1.05603 1.60051 1.17505 0.87303 0.94628 0.96533 1.20844 0.90036 1.00982 1.01384 1.20867 0.86328 0.97322 1.01323 1.98380 1.22595 1.85330 1.96910 1.21237 0.98588 0.93554 0.97569 1.21317 0.89645 1.01729 0.99436 1.17593 0.81682 0.95742 1.00339 1.91500 1.39604 1.85433 1.94554 1.22761 1.00352 0.77481 0.98936 0.92183 0.77830 0.89455 0.89028 0.90551 0.88848 0.73922 0.85884 0.80375 0.79401 0.93724 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.54 10.75 21.45 0.23 -49.31 16 2 C 0.03 1.44 5.27 84.65 0.45 1.89 16 3 Si 0.96 41.42 29.54 68.60 2.03 43.44 16 4 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.56 -28.40 8.27 25.60 0.21 -28.19 16 8 H 0.07 3.45 7.80 -2.91 -0.02 3.42 16 9 C 0.23 10.94 0.87 -10.15 -0.01 10.93 16 10 O -0.59 -29.61 13.16 -148.98 -1.96 -31.57 16 11 C -0.11 -3.95 6.13 31.78 0.19 -3.76 16 12 C 0.10 3.12 6.16 86.73 0.53 3.65 16 13 N -0.62 -24.88 3.33 -829.65 -2.76 -27.64 16 14 C 0.71 28.39 8.22 179.05 1.47 29.86 16 15 O -0.62 -29.43 14.34 -4.02 -0.06 -29.49 16 16 N -0.67 -20.31 5.19 -317.00 -1.65 -21.96 16 17 C 0.14 3.86 6.28 38.15 0.24 4.10 16 18 C -0.11 -3.34 8.43 22.41 0.19 -3.15 16 19 C -0.03 -0.73 6.32 22.31 0.14 -0.58 16 20 Cl -0.06 -1.41 28.95 -2.72 -0.08 -1.49 16 21 C -0.09 -1.42 9.82 22.31 0.22 -1.20 16 22 C -0.10 -1.51 10.02 22.29 0.22 -1.29 16 23 C 0.07 1.48 7.31 22.48 0.16 1.64 16 24 F -0.13 -2.77 16.94 44.97 0.76 -2.01 16 25 C 0.13 6.15 5.38 86.85 0.47 6.62 16 26 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.37 19.89 7.56 -74.06 -0.56 19.33 16 28 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.09 3.07 8.03 -2.39 -0.02 3.05 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.42 10.16 7.64 -92.71 -0.71 9.46 16 33 H 0.12 4.58 6.47 -2.91 -0.02 4.57 16 34 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.04 2.24 8.03 -2.39 -0.02 2.22 16 37 H 0.05 2.65 7.37 -2.39 -0.02 2.63 16 Total: -1.00 -65.25 333.73 0.89 -64.37 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.12 Total: 35.14 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 4.49 Total: 20.52 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -4.18 Total: -98.91 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -2.02 Total: -61.05 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.76 Total: -2.01 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -65.25 0.89 -64.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475862177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.398 kcal (2) G-P(sol) polarization free energy of solvation -65.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds