Wall clock time and date at job start Tue Mar 31 2020 15:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46877 * 299.99718 * 3 2 1 6 6 H 1.48497 * 109.47209 * 59.99806 * 3 2 1 7 7 C 1.39871 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99223 * 197.96215 * 7 2 1 9 9 C 1.41136 * 119.99853 * 17.95858 * 7 2 1 10 10 C 1.40890 * 120.14923 * 204.59700 * 9 7 2 11 11 C 1.36344 * 119.83361 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16062 * 0.02562 * 11 10 9 13 13 N 1.38853 * 119.84084 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99798 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.33989 * 124.92018 * 89.99987 * 15 14 13 17 17 C 1.46667 * 106.10314 * 179.97438 * 16 15 14 18 18 C 1.39502 * 134.66544 * 180.28569 * 17 16 15 19 19 C 1.38389 * 117.98495 * 180.20096 * 18 17 16 20 20 Cl 1.73601 * 120.35809 * 179.74232 * 19 18 17 21 21 C 1.38712 * 119.28381 * 359.46526 * 19 18 17 22 22 N 1.31636 * 121.57893 * 0.29866 * 21 19 18 23 23 C 1.32507 * 121.73134 * 359.97438 * 22 21 19 24 24 O 1.34461 * 124.91502 * 269.97861 * 15 14 13 25 25 C 1.39575 * 120.31538 * 0.25367 * 12 11 10 26 26 C 1.36340 * 120.15945 * 359.48375 * 25 12 11 27 27 H 0.97000 * 119.99451 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.08522 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.91910 * 179.97438 * 11 10 9 30 30 H 0.97001 * 120.00165 * 0.02562 * 13 12 11 31 31 H 1.08999 * 109.47658 * 60.00086 * 14 13 12 32 32 H 1.09002 * 109.47646 * 299.99931 * 14 13 12 33 33 H 1.07995 * 126.95341 * 359.95711 * 16 15 14 34 34 H 1.08005 * 121.00337 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.20733 * 180.27326 * 21 19 18 36 36 H 1.07993 * 119.91526 * 179.72366 * 25 12 11 37 37 H 1.07995 * 120.08401 * 180.22992 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 -0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8844 2.3964 1.2124 7 6 2.0084 -1.2114 -0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3542 -2.4036 -0.3779 10 6 1.8267 -3.6473 0.0857 11 6 1.1901 -4.7952 -0.2833 12 6 0.0734 -4.7402 -1.1187 13 7 -0.5695 -5.9133 -1.4908 14 6 -1.7424 -5.8595 -2.3670 15 6 -2.2479 -7.2573 -2.6160 16 6 -3.1586 -7.8890 -1.8631 17 6 -3.3434 -9.2106 -2.4716 18 6 -4.1364 -10.3213 -2.1823 19 6 -4.0323 -11.4265 -3.0085 20 17 -4.9855 -12.8445 -2.7013 21 6 -3.1623 -11.3870 -4.0881 22 7 -2.4279 -10.3247 -4.3432 23 6 -2.4828 -9.2407 -3.5830 24 8 -1.8505 -8.0508 -3.6261 25 6 -0.3967 -3.5121 -1.5865 26 6 0.2267 -2.3558 -1.2213 27 1 -0.4849 0.8401 -0.0004 28 1 2.6910 -3.6914 0.7318 29 1 1.5514 -5.7493 0.0709 30 1 -0.2426 -6.7683 -1.1700 31 1 -1.4667 -5.3982 -3.3153 32 1 -2.5255 -5.2700 -1.8902 33 1 -3.6559 -7.5032 -0.9855 34 1 -4.8085 -10.3199 -1.3368 35 1 -3.0853 -12.2486 -4.7347 36 1 -1.2587 -3.4774 -2.2361 37 1 -0.1403 -1.4060 -1.5810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560279459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:58 Heat of formation + Delta-G solvation = 67.253507 kcal Electronic energy + Delta-G solvation = -22962.750190 eV Core-core repulsion = 19311.449203 eV Total energy + Delta-G solvation = -3651.300987 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.01623 -39.52064 -38.05165 -37.02958 -35.43424 -33.95088 -33.13163 -31.57634 -30.70167 -29.53924 -28.63437 -26.51471 -24.35364 -23.88242 -22.94227 -21.78808 -21.01893 -20.07875 -18.56961 -17.56640 -17.27149 -16.98382 -16.87084 -16.14428 -15.20873 -15.03032 -14.57861 -14.23153 -14.05711 -13.93412 -13.77832 -13.55923 -13.31296 -12.85618 -12.74407 -12.39209 -12.23244 -11.92508 -11.76040 -11.71463 -11.33118 -11.15743 -11.07803 -10.86698 -10.53198 -10.00296 -9.76320 -9.38596 -9.33279 -9.23951 -8.86210 -8.65680 -7.57000 -6.71511 -6.50676 -4.10292 0.23937 0.47769 1.44638 1.85866 1.91666 2.84911 3.03550 3.11214 3.12857 3.18203 3.28463 3.81064 3.90533 4.01625 4.17449 4.25849 4.31460 4.59696 4.70183 4.82893 5.05169 5.26675 5.35056 5.40504 5.57502 5.73944 5.78526 5.91402 6.18452 6.23210 6.62735 6.77387 6.86289 7.13055 7.22295 7.29071 7.43946 7.61372 7.74521 8.08805 8.17881 8.37774 8.54194 8.71164 9.00083 9.07495 10.31142 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.043312 B = 0.001824 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.311555 B =15349.502302 C =15398.628587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.077 3.923 10 C -0.187 4.187 11 C -0.151 4.151 12 C 0.085 3.915 13 N -0.759 5.759 14 C 0.212 3.788 15 C 0.051 3.949 16 C -0.181 4.181 17 C -0.165 4.165 18 C -0.014 4.014 19 C -0.112 4.112 20 Cl -0.048 7.048 21 C 0.157 3.843 22 N -0.455 5.455 23 C 0.261 3.739 24 O -0.172 6.172 25 C -0.162 4.162 26 C -0.126 4.126 27 H 0.276 0.724 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.388 0.612 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.089 0.911 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 -18.905 -5.078 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.208 4.208 11 C -0.173 4.173 12 C -0.011 4.011 13 N -0.397 5.397 14 C 0.087 3.913 15 C 0.003 3.997 16 C -0.201 4.201 17 C -0.168 4.168 18 C -0.040 4.040 19 C -0.141 4.141 20 Cl -0.019 7.019 21 C -0.007 4.007 22 N -0.171 5.171 23 C 0.085 3.915 24 O -0.070 6.070 25 C -0.184 4.184 26 C -0.146 4.146 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.188 0.812 34 H 0.170 0.830 35 H 0.196 0.804 36 H 0.107 0.893 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.516 -18.557 -6.044 22.169 hybrid contribution -0.340 0.240 0.972 1.058 sum -10.856 -18.318 -5.072 21.889 Atomic orbital electron populations 1.69862 1.07387 1.28638 1.37368 1.25819 0.94680 1.00992 0.92630 0.86350 0.81019 0.81465 0.78361 1.18585 1.19915 1.20240 1.19422 0.97999 0.91334 1.40817 0.90795 1.17533 0.92297 0.92038 0.90719 1.20555 1.02756 0.92529 1.04922 1.19802 0.97506 0.97166 1.02841 1.17250 0.96153 0.85022 1.02670 1.43755 1.32225 1.06633 1.57049 1.19625 0.90489 0.84914 0.96259 1.22813 0.96288 0.93848 0.86775 1.22272 1.02818 0.92015 1.03036 1.20604 1.00887 0.96587 0.98752 1.20864 0.96040 0.89135 0.97963 1.21775 1.00783 0.91214 1.00353 1.98390 1.70436 1.37640 1.95434 1.22637 0.89456 0.94616 0.93991 1.66488 1.23714 0.97630 1.29260 1.19643 0.92354 0.86939 0.92546 1.84021 1.56305 1.20722 1.45904 1.20086 1.01678 0.91886 1.04712 1.20929 0.98249 0.96462 0.98918 0.91292 0.88900 0.89485 0.77890 0.90831 0.89156 0.81220 0.83045 0.80361 0.89294 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.84 10.97 55.54 0.61 -20.23 16 2 C 0.07 1.88 5.13 -17.33 -0.09 1.79 16 3 Si 0.90 18.86 29.60 -169.99 -5.03 13.82 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.46 -12.36 9.03 -37.87 -0.34 -12.70 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.08 2.03 5.57 -106.79 -0.60 1.44 16 10 C -0.19 -4.52 9.74 -39.26 -0.38 -4.90 16 11 C -0.15 -3.28 9.82 -39.77 -0.39 -3.67 16 12 C 0.08 1.75 6.67 -83.69 -0.56 1.19 16 13 N -0.76 -12.39 5.69 -59.67 -0.34 -12.73 16 14 C 0.21 2.86 5.39 -5.19 -0.03 2.83 16 15 C 0.05 0.63 6.60 -35.80 -0.24 0.40 16 16 C -0.18 -1.94 11.01 -37.68 -0.41 -2.36 16 17 C -0.16 -1.83 6.41 -105.13 -0.67 -2.50 16 18 C -0.01 -0.12 10.02 -39.05 -0.39 -0.51 16 19 C -0.11 -0.94 6.34 -39.35 -0.25 -1.19 16 20 Cl -0.05 -0.33 28.99 -51.86 -1.50 -1.84 16 21 C 0.16 1.41 10.95 -17.46 -0.19 1.22 16 22 N -0.45 -5.59 10.38 -12.95 -0.13 -5.72 16 23 C 0.26 3.43 8.58 -16.37 -0.14 3.29 16 24 O -0.17 -2.43 10.57 3.86 0.04 -2.39 16 25 C -0.16 -3.58 9.23 -39.77 -0.37 -3.95 16 26 C -0.13 -3.18 8.64 -39.26 -0.34 -3.52 16 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.39 5.88 8.46 -40.82 -0.35 5.53 16 31 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 32 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 33 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.09 1.73 6.68 -52.49 -0.35 1.38 16 37 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -28.68 340.29 -10.13 -38.81 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.51 Total: 8.29 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -5.39 Total: -23.14 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.14 Total: -38.68 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.68 -10.13 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560279459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.060 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds