Wall clock time and date at job start Tue Mar 31 2020 15:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46877 * 299.99718 * 3 2 1 6 6 H 1.48497 * 109.47209 * 59.99806 * 3 2 1 7 7 C 1.39871 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99223 * 197.96215 * 7 2 1 9 9 C 1.41136 * 119.99853 * 17.95858 * 7 2 1 10 10 C 1.40890 * 120.14923 * 204.59700 * 9 7 2 11 11 C 1.36344 * 119.83361 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16062 * 0.02562 * 11 10 9 13 13 N 1.38853 * 119.84084 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99798 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.33989 * 124.92018 * 89.99987 * 15 14 13 17 17 C 1.46667 * 106.10314 * 179.97438 * 16 15 14 18 18 C 1.39502 * 134.66544 * 180.28569 * 17 16 15 19 19 C 1.38389 * 117.98495 * 180.20096 * 18 17 16 20 20 Cl 1.73601 * 120.35809 * 179.74232 * 19 18 17 21 21 C 1.38712 * 119.28381 * 359.46526 * 19 18 17 22 22 N 1.31636 * 121.57893 * 0.29866 * 21 19 18 23 23 C 1.32507 * 121.73134 * 359.97438 * 22 21 19 24 24 O 1.34461 * 124.91502 * 269.97861 * 15 14 13 25 25 C 1.39575 * 120.31538 * 0.25367 * 12 11 10 26 26 C 1.36340 * 120.15945 * 359.48375 * 25 12 11 27 27 H 0.97000 * 119.99451 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.08522 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.91910 * 179.97438 * 11 10 9 30 30 H 0.97001 * 120.00165 * 0.02562 * 13 12 11 31 31 H 1.08999 * 109.47658 * 60.00086 * 14 13 12 32 32 H 1.09002 * 109.47646 * 299.99931 * 14 13 12 33 33 H 1.07995 * 126.95341 * 359.95711 * 16 15 14 34 34 H 1.08005 * 121.00337 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.20733 * 180.27326 * 21 19 18 36 36 H 1.07993 * 119.91526 * 179.72366 * 25 12 11 37 37 H 1.07995 * 120.08401 * 180.22992 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 -0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8844 2.3964 1.2124 7 6 2.0084 -1.2114 -0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3542 -2.4036 -0.3779 10 6 1.8267 -3.6473 0.0857 11 6 1.1901 -4.7952 -0.2833 12 6 0.0734 -4.7402 -1.1187 13 7 -0.5695 -5.9133 -1.4908 14 6 -1.7424 -5.8595 -2.3670 15 6 -2.2479 -7.2573 -2.6160 16 6 -3.1586 -7.8890 -1.8631 17 6 -3.3434 -9.2106 -2.4716 18 6 -4.1364 -10.3213 -2.1823 19 6 -4.0323 -11.4265 -3.0085 20 17 -4.9855 -12.8445 -2.7013 21 6 -3.1623 -11.3870 -4.0881 22 7 -2.4279 -10.3247 -4.3432 23 6 -2.4828 -9.2407 -3.5830 24 8 -1.8505 -8.0508 -3.6261 25 6 -0.3967 -3.5121 -1.5865 26 6 0.2267 -2.3558 -1.2213 27 1 -0.4849 0.8401 -0.0004 28 1 2.6910 -3.6914 0.7318 29 1 1.5514 -5.7493 0.0709 30 1 -0.2426 -6.7683 -1.1700 31 1 -1.4667 -5.3982 -3.3153 32 1 -2.5255 -5.2700 -1.8902 33 1 -3.6559 -7.5032 -0.9855 34 1 -4.8085 -10.3199 -1.3368 35 1 -3.0853 -12.2486 -4.7347 36 1 -1.2587 -3.4774 -2.2361 37 1 -0.1403 -1.4060 -1.5810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560279459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:57 Heat of formation + Delta-G solvation = 50.724896 kcal Electronic energy + Delta-G solvation = -22963.466924 eV Core-core repulsion = 19311.449203 eV Total energy + Delta-G solvation = -3652.017721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.87554 -40.32419 -39.73561 -37.66583 -36.93239 -35.11404 -34.54087 -32.46464 -31.83694 -31.34477 -30.12318 -27.75501 -25.83893 -24.90846 -23.86730 -22.99368 -22.45637 -21.73571 -19.39733 -19.15061 -18.59604 -17.94229 -17.69212 -17.37294 -16.79560 -16.46810 -15.72678 -15.49654 -15.10782 -14.92095 -14.81962 -14.50166 -14.41944 -14.25319 -14.08055 -13.89430 -13.54529 -13.41404 -12.96210 -12.91488 -12.74315 -12.59858 -12.31494 -12.27405 -11.93053 -11.57345 -11.19173 -11.09583 -10.77333 -10.36128 -9.97037 -9.73030 -9.39837 -8.55593 -8.21762 -6.01353 -0.52664 -0.28682 0.75180 1.01116 1.09940 1.11135 1.19320 1.41643 1.55110 1.58202 2.28208 2.34183 2.84156 2.85046 3.05971 3.13273 3.51320 3.56835 3.77611 3.85770 4.05167 4.26970 4.34981 4.42978 4.49801 4.54552 4.60996 4.72004 5.01846 5.03984 5.09542 5.11224 5.27460 5.45587 5.66221 5.75588 5.78700 5.94961 6.19523 6.37772 6.45191 6.62873 6.83392 7.05208 7.09182 7.24398 8.48146 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.043312 B = 0.001824 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.311555 B =15349.502302 C =15398.628587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.036 3.964 10 C -0.197 4.197 11 C -0.161 4.161 12 C 0.111 3.889 13 N -0.750 5.750 14 C 0.213 3.787 15 C 0.029 3.971 16 C -0.157 4.157 17 C -0.176 4.176 18 C -0.006 4.006 19 C -0.110 4.110 20 Cl -0.030 7.030 21 C 0.163 3.837 22 N -0.486 5.486 23 C 0.234 3.766 24 O -0.197 6.197 25 C -0.170 4.170 26 C -0.144 4.144 27 H 0.283 0.717 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.397 0.603 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.208 0.792 36 H 0.114 0.886 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 -20.961 -4.909 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.180 4.180 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.535 4.535 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.217 4.217 11 C -0.183 4.183 12 C 0.012 3.988 13 N -0.387 5.387 14 C 0.089 3.911 15 C -0.019 4.019 16 C -0.177 4.177 17 C -0.180 4.180 18 C -0.032 4.032 19 C -0.139 4.139 20 Cl -0.001 7.001 21 C -0.001 4.001 22 N -0.204 5.204 23 C 0.059 3.941 24 O -0.096 6.096 25 C -0.192 4.192 26 C -0.164 4.164 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.231 0.769 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.212 0.788 34 H 0.197 0.803 35 H 0.224 0.776 36 H 0.132 0.868 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.113 -20.659 -5.879 24.660 hybrid contribution 0.000 0.498 0.853 0.988 sum -12.113 -20.161 -5.026 24.051 Atomic orbital electron populations 1.69912 1.08618 1.29773 1.38308 1.26587 0.95487 1.03993 0.91891 0.85274 0.79377 0.77005 0.78694 1.18606 1.19138 1.19353 1.19615 0.97993 0.92796 1.43139 0.91540 1.17860 0.93591 0.92987 0.92216 1.20740 1.03104 0.92838 1.05024 1.20088 0.97677 0.97603 1.02941 1.17315 0.95082 0.86030 1.00348 1.43795 1.32606 1.05534 1.56726 1.19661 0.89631 0.86281 0.95524 1.22521 0.97967 0.93636 0.87769 1.22569 1.01182 0.91389 1.02602 1.20740 1.01343 0.97435 0.98438 1.21198 0.95362 0.88232 0.98384 1.21832 1.00469 0.91716 0.99869 1.98405 1.69834 1.36544 1.95294 1.23181 0.88307 0.94352 0.94248 1.66494 1.25281 0.98316 1.30264 1.19931 0.93368 0.86959 0.93825 1.83940 1.57266 1.21555 1.46793 1.20288 1.02330 0.91503 1.05058 1.20875 0.98855 0.96905 0.99779 0.90688 0.88612 0.86642 0.76895 0.91235 0.87601 0.78810 0.80334 0.77575 0.86794 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.73 10.97 21.82 0.24 -44.50 16 2 C 0.03 1.69 5.13 85.22 0.44 2.13 16 3 Si 0.97 39.63 29.60 68.60 2.03 41.66 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.50 -27.99 9.03 23.38 0.21 -27.78 16 8 H 0.07 3.61 7.91 -2.91 -0.02 3.59 16 9 C 0.04 1.98 5.57 -21.27 -0.12 1.86 16 10 C -0.20 -9.67 9.74 22.48 0.22 -9.45 16 11 C -0.16 -6.85 9.82 22.15 0.22 -6.63 16 12 C 0.11 4.43 6.67 38.67 0.26 4.69 16 13 N -0.75 -23.03 5.69 -342.69 -1.95 -24.98 16 14 C 0.21 5.38 5.39 85.64 0.46 5.85 16 15 C 0.03 0.67 6.60 24.72 0.16 0.83 16 16 C -0.16 -2.99 11.01 23.50 0.26 -2.73 16 17 C -0.18 -3.53 6.41 -20.20 -0.13 -3.66 16 18 C -0.01 -0.08 10.02 22.61 0.23 0.14 16 19 C -0.11 -1.53 6.34 22.42 0.14 -1.39 16 20 Cl -0.03 -0.32 28.99 -2.72 -0.08 -0.40 16 21 C 0.16 2.58 10.95 84.84 0.93 3.51 16 22 N -0.49 -11.48 10.38 -308.09 -3.20 -14.68 16 23 C 0.23 5.94 8.58 85.17 0.73 6.67 16 24 O -0.20 -5.48 10.57 -9.09 -0.10 -5.58 16 25 C -0.17 -7.47 9.23 22.15 0.20 -7.27 16 26 C -0.14 -7.51 8.64 22.47 0.19 -7.31 16 27 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 28 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 29 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.40 11.10 8.46 -92.71 -0.78 10.32 16 31 H 0.07 1.84 7.91 -2.39 -0.02 1.82 16 32 H 0.11 2.39 7.94 -2.39 -0.02 2.38 16 33 H 0.19 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.11 4.33 6.68 -2.91 -0.02 4.31 16 37 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 Total: -1.00 -64.58 340.29 1.70 -62.88 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.35 Total: 26.13 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 4.40 Total: -40.53 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.91 Total: -84.15 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.10 Total: -5.58 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -64.58 1.70 -62.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560279459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.603 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds