Wall clock time and date at job start Tue Mar 31 2020 15:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39937 * 120.04075 * 36.65439 * 3 2 1 5 5 F 1.35103 * 120.02053 * 359.97438 * 4 3 2 6 6 C 1.37990 * 119.96043 * 180.02562 * 4 3 2 7 7 C 1.39588 * 120.03935 * 359.97438 * 6 4 3 8 8 C 1.47900 * 119.96051 * 179.97438 * 7 6 4 9 9 O 1.21556 * 119.99821 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00446 * 179.97438 * 8 7 6 11 11 C 1.39841 * 119.99954 * 185.10007 * 10 8 7 12 12 C 1.39306 * 119.95374 * 33.33259 * 11 10 8 13 13 C 1.38485 * 120.42722 * 180.25331 * 12 11 10 14 14 C 1.37690 * 120.32362 * 359.45339 * 13 12 11 15 15 C 1.40744 * 119.88886 * 0.26734 * 14 13 12 16 16 C 1.41407 * 120.21061 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00108 * 209.18836 * 16 15 14 18 18 C 1.39935 * 119.99877 * 29.17585 * 16 15 14 19 19 N 1.30829 * 119.99862 * 15.65100 * 18 16 15 20 20 Si 1.86795 * 120.00083 * 195.64535 * 18 16 15 21 21 H 1.48503 * 109.47418 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47237 * 120.00538 * 20 18 16 23 23 H 1.48500 * 109.47066 * 240.00317 * 20 18 16 24 24 C 1.38273 * 119.94545 * 213.03729 * 11 10 8 25 25 C 1.39595 * 120.08471 * 0.25391 * 7 6 4 26 26 C 1.37998 * 120.03664 * 359.48820 * 25 7 6 27 27 F 1.35106 * 120.01835 * 180.27593 * 26 25 7 28 28 H 1.07994 * 119.98265 * 180.02562 * 6 4 3 29 29 H 0.97001 * 119.99824 * 5.10088 * 10 8 7 30 30 H 1.08004 * 119.78794 * 359.97438 * 12 11 10 31 31 H 1.08003 * 119.83919 * 179.72076 * 13 12 11 32 32 H 1.07998 * 120.05479 * 180.25654 * 14 13 12 33 33 H 0.97002 * 119.99931 * 179.97438 * 19 18 16 34 34 H 1.08003 * 120.16461 * 0.04448 * 24 11 10 35 35 H 1.07996 * 119.98184 * 179.74466 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.9709 -0.7232 5 9 2.5951 -1.9107 -1.4217 6 6 4.6489 -0.9690 -0.7216 7 6 5.3455 0.0015 0.0004 8 6 6.8245 0.0015 0.0013 9 8 7.4327 -0.8436 -0.6260 10 7 7.4981 0.9385 0.6977 11 6 8.8924 1.0045 0.6135 12 6 9.5338 0.6729 -0.5778 13 6 10.9143 0.7298 -0.6705 14 6 11.6680 1.1260 0.4116 15 6 11.0336 1.4696 1.6201 16 6 11.8010 1.8769 2.7358 17 1 11.4390 1.6925 3.7365 18 6 13.0296 2.5185 2.5433 19 7 13.3315 3.0153 1.3713 20 14 14.2383 2.6659 3.9598 21 1 13.6627 2.0268 5.1704 22 1 15.5089 1.9870 3.5990 23 1 14.5047 4.1004 4.2360 24 6 9.6319 1.4048 1.7112 25 6 4.6480 0.9686 0.7263 26 6 3.2681 0.9731 0.7227 27 9 2.5934 1.9126 1.4209 28 1 5.1902 -1.7184 -1.2799 29 1 7.0156 1.5670 1.2573 30 1 8.9508 0.3651 -1.4334 31 1 11.4020 0.4663 -1.5974 32 1 12.7441 1.1728 0.3332 33 1 14.1830 3.4604 1.2380 34 1 9.1355 1.6660 2.6341 35 1 5.1887 1.7162 1.2876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569186431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:00 Heat of formation + Delta-G solvation = -41.023491 kcal Electronic energy + Delta-G solvation = -25206.276957 eV Core-core repulsion = 20998.484047 eV Total energy + Delta-G solvation = -4207.792910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.69577 -49.66794 -40.63602 -38.95448 -37.38050 -36.83026 -34.75020 -33.33642 -32.16785 -31.09552 -29.94136 -28.50689 -25.74455 -25.29768 -23.58824 -22.06343 -21.13207 -20.27790 -19.96159 -18.58237 -18.17119 -17.64588 -16.85575 -16.79735 -16.32653 -15.94844 -15.62318 -15.47553 -15.16825 -15.11282 -14.56017 -14.49231 -14.09817 -14.01452 -13.73032 -13.38018 -13.17345 -12.99271 -12.72395 -12.43386 -12.37013 -12.28399 -11.80106 -11.49318 -11.19230 -10.77515 -10.70258 -10.37744 -9.90366 -9.74965 -9.68502 -9.48376 -9.36607 -9.09577 -7.55995 -7.06785 -6.81979 -4.46301 -0.44995 0.27948 1.83510 2.03219 2.57021 2.72560 2.79010 2.90507 3.04701 3.08054 3.09403 3.11995 3.17419 3.38712 3.57608 3.89315 4.09681 4.21088 4.35510 4.56914 4.76724 4.94766 5.02181 5.22360 5.46572 5.56538 5.88306 6.15217 6.34627 6.49026 6.79527 6.80182 6.86281 6.92918 7.14009 7.41293 7.47500 7.77549 7.92821 7.95296 8.12522 8.28852 8.53693 8.80581 8.84429 10.14959 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.002367 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.830666 B =11825.623563 C =12657.057526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C 0.249 3.751 3 C -0.081 4.081 4 C 0.175 3.825 5 F -0.113 7.113 6 C -0.107 4.107 7 C -0.033 4.033 8 C 0.545 3.455 9 O -0.501 6.501 10 N -0.650 5.650 11 C 0.145 3.855 12 C -0.221 4.221 13 C -0.096 4.096 14 C -0.157 4.157 15 C 0.123 3.877 16 C -0.467 4.467 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.238 4.238 25 C -0.135 4.135 26 C 0.176 3.824 27 F -0.113 7.113 28 H 0.171 0.829 29 H 0.402 0.598 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.280 0.720 34 H 0.098 0.902 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -2.774 -1.595 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.057 5.057 2 C -0.067 4.067 3 C -0.087 4.087 4 C 0.152 3.848 5 F -0.091 7.091 6 C -0.127 4.127 7 C -0.038 4.038 8 C 0.331 3.669 9 O -0.376 6.376 10 N -0.294 5.294 11 C 0.054 3.946 12 C -0.242 4.242 13 C -0.115 4.115 14 C -0.177 4.177 15 C 0.121 3.879 16 C -0.497 4.497 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.732 3.268 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.260 4.260 25 C -0.154 4.154 26 C 0.154 3.846 27 F -0.091 7.091 28 H 0.188 0.812 29 H 0.237 0.763 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.168 -3.233 -2.176 15.660 hybrid contribution 0.466 0.576 0.897 1.164 sum -14.701 -2.657 -1.279 14.994 Atomic orbital electron populations 1.81258 1.11376 1.06264 1.06839 1.24893 0.91871 0.95036 0.94919 1.15970 0.85807 1.00391 1.06524 1.17036 0.89313 0.86475 0.91928 1.91617 1.80056 1.61714 1.75707 1.21263 0.90876 1.00343 1.00173 1.19958 0.94556 0.93944 0.95307 1.17890 0.85630 0.82246 0.81177 1.90854 1.68539 1.36326 1.41913 1.43354 1.07232 1.32627 1.46199 1.17384 0.79156 1.02955 0.95092 1.20324 0.94464 1.13252 0.96139 1.20596 0.93167 1.00059 0.97706 1.21342 0.99564 1.03032 0.93762 1.17372 0.89913 0.87692 0.92972 1.19520 1.02159 1.33973 0.94016 0.90357 1.25867 0.98319 0.93155 0.96739 1.69812 1.22382 1.26310 1.23746 0.86274 0.80169 0.78597 0.81750 1.18447 1.19729 1.20034 1.20740 0.94108 1.14982 0.96139 1.21369 0.91570 1.00959 1.01541 1.16998 0.89252 0.86462 0.91902 1.91623 1.80076 1.61697 1.75717 0.81168 0.76257 0.87839 0.88794 0.86655 0.90886 0.88427 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.73 18.54 41.84 0.78 -3.96 16 2 C 0.25 2.59 14.59 -22.47 -0.33 2.26 16 3 C -0.08 -0.69 5.75 -106.70 -0.61 -1.30 16 4 C 0.17 1.43 7.26 -39.04 -0.28 1.15 16 5 F -0.11 -1.02 16.80 2.25 0.04 -0.98 16 6 C -0.11 -0.91 9.55 -39.17 -0.37 -1.29 16 7 C -0.03 -0.31 5.87 -104.93 -0.62 -0.93 16 8 C 0.55 7.58 7.51 -12.30 -0.09 7.49 16 9 O -0.50 -8.84 13.99 5.32 0.07 -8.77 16 10 N -0.65 -9.55 5.28 -10.75 -0.06 -9.61 16 11 C 0.15 2.91 6.27 -83.79 -0.53 2.38 16 12 C -0.22 -4.75 8.66 -39.09 -0.34 -5.08 16 13 C -0.10 -2.16 10.02 -39.69 -0.40 -2.56 16 14 C -0.16 -3.87 8.66 -38.84 -0.34 -4.21 16 15 C 0.12 3.07 5.52 -106.85 -0.59 2.48 16 16 C -0.47 -11.63 9.04 -37.74 -0.34 -11.97 16 17 H 0.08 1.88 7.89 -52.49 -0.41 1.46 16 18 C 0.08 1.83 5.15 -17.34 -0.09 1.74 16 19 N -0.80 -19.69 11.15 55.55 0.62 -19.07 16 20 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.24 -5.23 9.70 -38.67 -0.38 -5.60 16 25 C -0.13 -0.98 9.50 -39.16 -0.37 -1.35 16 26 C 0.18 1.36 7.27 -39.04 -0.28 1.08 16 27 F -0.11 -0.96 16.80 2.25 0.04 -0.92 16 28 H 0.17 1.42 7.63 -52.49 -0.40 1.02 16 29 H 0.40 4.35 6.84 -40.82 -0.28 4.07 16 30 H 0.10 2.15 6.39 -52.48 -0.34 1.82 16 31 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 32 H 0.12 2.93 6.43 -52.49 -0.34 2.60 16 33 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 34 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 35 H 0.16 0.85 6.39 -52.49 -0.34 0.51 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -28.70 329.77 -6.61 -35.31 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -2.08 Total: 5.94 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -5.96 Total: -15.71 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 1.34 Total: -32.63 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.08 Total: -1.90 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.70 -6.61 -35.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569186431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.716 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds