Wall clock time and date at job start Tue Mar 31 2020 15:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39937 * 120.04075 * 36.65439 * 3 2 1 5 5 F 1.35103 * 120.02053 * 359.97438 * 4 3 2 6 6 C 1.37990 * 119.96043 * 180.02562 * 4 3 2 7 7 C 1.39588 * 120.03935 * 359.97438 * 6 4 3 8 8 C 1.47900 * 119.96051 * 179.97438 * 7 6 4 9 9 O 1.21556 * 119.99821 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00446 * 179.97438 * 8 7 6 11 11 C 1.39841 * 119.99954 * 185.10007 * 10 8 7 12 12 C 1.39306 * 119.95374 * 33.33259 * 11 10 8 13 13 C 1.38485 * 120.42722 * 180.25331 * 12 11 10 14 14 C 1.37690 * 120.32362 * 359.45339 * 13 12 11 15 15 C 1.40744 * 119.88886 * 0.26734 * 14 13 12 16 16 C 1.41407 * 120.21061 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00108 * 209.18836 * 16 15 14 18 18 C 1.39935 * 119.99877 * 29.17585 * 16 15 14 19 19 N 1.30829 * 119.99862 * 15.65100 * 18 16 15 20 20 Si 1.86795 * 120.00083 * 195.64535 * 18 16 15 21 21 H 1.48503 * 109.47418 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47237 * 120.00538 * 20 18 16 23 23 H 1.48500 * 109.47066 * 240.00317 * 20 18 16 24 24 C 1.38273 * 119.94545 * 213.03729 * 11 10 8 25 25 C 1.39595 * 120.08471 * 0.25391 * 7 6 4 26 26 C 1.37998 * 120.03664 * 359.48820 * 25 7 6 27 27 F 1.35106 * 120.01835 * 180.27593 * 26 25 7 28 28 H 1.07994 * 119.98265 * 180.02562 * 6 4 3 29 29 H 0.97001 * 119.99824 * 5.10088 * 10 8 7 30 30 H 1.08004 * 119.78794 * 359.97438 * 12 11 10 31 31 H 1.08003 * 119.83919 * 179.72076 * 13 12 11 32 32 H 1.07998 * 120.05479 * 180.25654 * 14 13 12 33 33 H 0.97002 * 119.99931 * 179.97438 * 19 18 16 34 34 H 1.08003 * 120.16461 * 0.04448 * 24 11 10 35 35 H 1.07996 * 119.98184 * 179.74466 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.9709 -0.7232 5 9 2.5951 -1.9107 -1.4217 6 6 4.6489 -0.9690 -0.7216 7 6 5.3455 0.0015 0.0004 8 6 6.8245 0.0015 0.0013 9 8 7.4327 -0.8436 -0.6260 10 7 7.4981 0.9385 0.6977 11 6 8.8924 1.0045 0.6135 12 6 9.5338 0.6729 -0.5778 13 6 10.9143 0.7298 -0.6705 14 6 11.6680 1.1260 0.4116 15 6 11.0336 1.4696 1.6201 16 6 11.8010 1.8769 2.7358 17 1 11.4390 1.6925 3.7365 18 6 13.0296 2.5185 2.5433 19 7 13.3315 3.0153 1.3713 20 14 14.2383 2.6659 3.9598 21 1 13.6627 2.0268 5.1704 22 1 15.5089 1.9870 3.5990 23 1 14.5047 4.1004 4.2360 24 6 9.6319 1.4048 1.7112 25 6 4.6480 0.9686 0.7263 26 6 3.2681 0.9731 0.7227 27 9 2.5934 1.9126 1.4209 28 1 5.1902 -1.7184 -1.2799 29 1 7.0156 1.5670 1.2573 30 1 8.9508 0.3651 -1.4334 31 1 11.4020 0.4663 -1.5974 32 1 12.7441 1.1728 0.3332 33 1 14.1830 3.4604 1.2380 34 1 9.1355 1.6660 2.6341 35 1 5.1887 1.7162 1.2876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569186431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:58 Heat of formation + Delta-G solvation = -55.473764 kcal Electronic energy + Delta-G solvation = -25206.903567 eV Core-core repulsion = 20998.484047 eV Total energy + Delta-G solvation = -4208.419521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.37936 -50.35174 -41.72873 -39.97703 -38.86402 -37.76747 -36.22724 -34.94935 -33.06653 -31.81929 -31.71429 -30.01850 -27.17133 -26.62744 -24.30124 -23.37856 -22.78108 -21.67674 -20.72030 -19.63396 -19.43585 -18.67683 -17.82203 -17.49628 -17.40954 -17.02828 -16.62704 -16.62001 -16.54182 -16.16668 -16.01733 -15.66035 -14.95969 -14.95406 -14.90993 -14.59733 -14.53808 -14.07050 -14.00832 -13.59962 -13.51461 -13.13345 -13.10276 -13.05744 -12.78542 -12.48060 -12.32714 -11.93061 -11.52844 -11.23344 -11.03251 -10.73542 -10.48590 -10.13417 -9.34247 -8.71607 -8.58462 -6.32173 -1.21756 -0.36870 0.78383 1.01251 1.21240 1.23652 1.44093 1.53787 1.57715 1.83926 1.92955 2.24354 2.26444 2.36012 2.36778 2.81142 2.87273 3.29214 3.42429 3.65508 3.75532 4.02518 4.26990 4.29812 4.44794 4.54295 4.69864 4.81046 4.99715 5.07072 5.12983 5.18581 5.23764 5.36670 5.74338 5.84562 6.04638 6.11620 6.14380 6.29320 6.55903 6.72120 6.97793 6.99231 7.14463 8.40569 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.002367 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.830666 B =11825.623563 C =12657.057526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.265 3.735 3 C -0.074 4.074 4 C 0.181 3.819 5 F -0.117 7.117 6 C -0.095 4.095 7 C -0.035 4.035 8 C 0.552 3.448 9 O -0.539 6.539 10 N -0.644 5.644 11 C 0.161 3.839 12 C -0.229 4.229 13 C -0.100 4.100 14 C -0.187 4.187 15 C 0.094 3.906 16 C -0.498 4.498 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.830 5.830 20 Si 0.978 3.022 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.268 1.268 24 C -0.245 4.245 25 C -0.111 4.111 26 C 0.184 3.816 27 F -0.114 7.114 28 H 0.172 0.828 29 H 0.422 0.578 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.286 0.714 34 H 0.116 0.884 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 -2.464 -0.785 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.051 4.051 3 C -0.080 4.080 4 C 0.159 3.841 5 F -0.095 7.095 6 C -0.115 4.115 7 C -0.040 4.040 8 C 0.340 3.660 9 O -0.417 6.417 10 N -0.290 5.290 11 C 0.068 3.932 12 C -0.250 4.250 13 C -0.119 4.119 14 C -0.207 4.207 15 C 0.091 3.909 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.178 4.178 19 N -0.456 5.456 20 Si 0.800 3.200 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.267 4.267 25 C -0.130 4.130 26 C 0.162 3.838 27 F -0.092 7.092 28 H 0.190 0.810 29 H 0.262 0.738 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.469 -2.911 -1.360 16.780 hybrid contribution 0.696 0.432 0.560 0.992 sum -15.773 -2.479 -0.799 15.987 Atomic orbital electron populations 1.81279 1.12540 1.07489 1.08095 1.25109 0.92133 0.93967 0.93869 1.15997 0.84789 1.00625 1.06553 1.16849 0.88972 0.86355 0.91927 1.91617 1.80094 1.61919 1.75844 1.21212 0.90845 0.99920 0.99529 1.19407 0.91628 0.95592 0.97331 1.18359 0.87203 0.80916 0.79519 1.90845 1.69861 1.37705 1.43262 1.43209 1.05190 1.33629 1.46994 1.17325 0.81676 1.00448 0.93779 1.20524 0.94169 1.13201 0.97089 1.20817 0.93904 0.99377 0.97788 1.21250 0.98869 1.05636 0.94944 1.17739 0.91537 0.88333 0.93247 1.19772 1.03580 1.35304 0.94140 0.90256 1.26678 0.99578 0.92357 0.99229 1.69874 1.23121 1.26997 1.25618 0.85207 0.77587 0.78750 0.78462 1.18058 1.19428 1.19259 1.20929 0.93378 1.14906 0.97446 1.21459 0.91251 1.00175 1.00100 1.16855 0.89179 0.86115 0.91629 1.91635 1.80120 1.61715 1.75717 0.81035 0.73808 0.87027 0.87254 0.88614 0.90324 0.86594 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.87 18.54 19.00 0.35 -9.52 16 2 C 0.26 5.02 14.59 88.33 1.29 6.31 16 3 C -0.07 -1.05 5.75 -21.21 -0.12 -1.17 16 4 C 0.18 2.52 7.26 22.62 0.16 2.69 16 5 F -0.12 -1.87 16.80 44.97 0.76 -1.12 16 6 C -0.10 -1.39 9.55 22.54 0.22 -1.17 16 7 C -0.04 -0.56 5.87 -20.07 -0.12 -0.68 16 8 C 0.55 14.04 7.51 86.80 0.65 14.69 16 9 O -0.54 -18.24 13.99 -3.89 -0.05 -18.29 16 10 N -0.64 -17.27 5.28 -306.19 -1.62 -18.89 16 11 C 0.16 6.23 6.27 38.13 0.24 6.47 16 12 C -0.23 -9.70 8.66 22.59 0.20 -9.50 16 13 C -0.10 -4.55 10.02 22.20 0.22 -4.33 16 14 C -0.19 -9.51 8.66 22.75 0.20 -9.31 16 15 C 0.09 4.77 5.52 -21.31 -0.12 4.66 16 16 C -0.50 -25.28 9.04 23.46 0.21 -25.06 16 17 H 0.08 3.85 7.89 -2.91 -0.02 3.82 16 18 C 0.04 1.74 5.15 85.25 0.44 2.18 16 19 N -0.83 -42.02 11.15 21.82 0.24 -41.77 16 20 Si 0.98 36.70 29.59 68.60 2.03 38.73 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 24 C -0.24 -10.62 9.70 22.86 0.22 -10.40 16 25 C -0.11 -1.18 9.50 22.54 0.21 -0.97 16 26 C 0.18 2.23 7.27 22.62 0.16 2.39 16 27 F -0.11 -1.57 16.80 44.97 0.76 -0.82 16 28 H 0.17 2.53 7.63 -2.91 -0.02 2.51 16 29 H 0.42 7.65 6.84 -92.71 -0.63 7.01 16 30 H 0.11 4.53 6.39 -2.91 -0.02 4.51 16 31 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.10 5.13 6.43 -2.91 -0.02 5.11 16 33 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 34 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.19 1.07 6.39 -2.91 -0.02 1.05 16 Total: -1.00 -63.48 329.77 7.10 -56.38 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.57 Total: 18.50 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.07 Total: -23.21 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.02 Total: -70.18 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.05 Total: -18.29 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 1.51 Total: -1.94 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -63.48 7.10 -56.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569186431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.905 kcal (2) G-P(sol) polarization free energy of solvation -63.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds