Wall clock time and date at job start Tue Mar 31 2020 15:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47004 * 270.00507 * 3 2 1 5 5 H 1.48499 * 109.47143 * 29.99965 * 3 2 1 6 6 H 1.48496 * 109.47374 * 150.00302 * 3 2 1 7 7 C 1.37878 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99965 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99739 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99912 * 89.99845 * 10 9 7 12 12 O 1.21285 * 120.00163 * 175.26541 * 11 10 9 13 13 C 1.50702 * 120.00168 * 355.26452 * 11 10 9 14 14 S 1.81397 * 109.47253 * 179.97438 * 13 11 10 15 15 C 1.81397 * 103.00117 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47153 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.47006 * 180.02562 * 16 15 14 18 18 C 1.39919 * 119.99979 * 269.99576 * 10 9 7 19 19 C 1.38904 * 120.06116 * 111.84718 * 18 10 9 20 20 C 1.38096 * 119.95141 * 179.72536 * 19 18 10 21 21 C 1.38287 * 120.08800 * 0.57669 * 20 19 18 22 22 C 1.38388 * 120.12143 * 359.69878 * 21 20 19 23 23 Cl 1.73602 * 119.97224 * 180.02562 * 22 21 20 24 24 C 1.38247 * 120.04616 * 0.02562 * 22 21 20 25 25 H 0.96994 * 120.00240 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47547 * 59.99713 * 9 7 2 27 27 H 1.09003 * 109.46973 * 299.99213 * 9 7 2 28 28 H 1.09002 * 109.47138 * 60.00510 * 13 11 10 29 29 H 1.08997 * 109.47369 * 300.00165 * 13 11 10 30 30 H 1.09001 * 109.47594 * 299.99964 * 15 14 13 31 31 H 1.08998 * 109.47329 * 60.00523 * 15 14 13 32 32 H 1.09000 * 109.47255 * 300.00170 * 16 15 14 33 33 H 1.09000 * 109.47094 * 60.00301 * 16 15 14 34 34 H 1.00903 * 111.00061 * 56.05005 * 17 16 15 35 35 H 1.00901 * 110.99852 * 179.97438 * 17 16 15 36 36 H 1.07991 * 120.02493 * 0.02562 * 19 18 10 37 37 H 1.07999 * 119.95869 * 180.27621 * 20 19 18 38 38 H 1.07998 * 119.94229 * 179.72351 * 21 20 19 39 39 H 1.07994 * 120.04076 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.2250 -3.2103 -1.1673 12 8 4.7100 -4.3220 -1.1692 13 6 3.8740 -2.5392 -2.4702 14 16 4.2936 -3.6399 -3.8497 15 6 3.8061 -2.6738 -5.3055 16 6 4.1004 -3.4781 -6.5733 17 7 3.7061 -2.6954 -7.7523 18 6 4.2328 -3.2351 1.2116 19 6 3.4257 -4.3004 1.5900 20 6 3.6611 -4.9536 2.7838 21 6 4.6916 -4.5410 3.6084 22 6 5.4941 -3.4763 3.2374 23 17 6.7872 -2.9620 4.2753 24 6 5.2668 -2.8222 2.0408 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8752 -0.6796 -0.8895 28 1 4.4363 -1.6100 -2.5633 29 1 2.8062 -2.3213 -2.4906 30 1 2.7398 -2.4533 -5.2549 31 1 4.3693 -1.7409 -5.3278 32 1 5.1666 -3.6990 -6.6242 33 1 3.5368 -4.4108 -6.5509 34 1 4.1674 -1.7981 -7.7614 35 1 3.8911 -3.2053 -8.6031 36 1 2.6179 -4.6207 0.9490 37 1 3.0365 -5.7848 3.0760 38 1 4.8708 -5.0507 4.5435 39 1 5.8934 -1.9917 1.7512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:02 Heat of formation + Delta-G solvation = -10.075006 kcal Electronic energy + Delta-G solvation = -22828.139232 eV Core-core repulsion = 19308.928981 eV Total energy + Delta-G solvation = -3519.210251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15965 -38.29830 -36.37244 -35.49317 -35.25450 -32.74532 -30.90064 -30.55106 -29.25792 -28.78550 -27.70019 -23.07270 -22.88642 -22.28025 -22.10791 -19.27473 -17.30566 -17.25582 -16.71013 -16.33022 -15.90018 -15.73366 -15.52420 -15.01486 -14.75258 -14.54578 -14.30950 -14.19526 -13.56616 -13.39773 -13.15710 -12.72364 -12.61978 -12.28396 -12.20201 -11.95421 -11.70746 -11.60004 -11.45431 -11.33743 -11.16962 -10.88513 -10.81411 -10.46295 -9.85132 -9.76072 -9.57064 -8.97305 -8.92637 -8.85109 -8.58186 -7.96331 -7.46010 -6.34861 -4.38712 1.35267 1.42585 1.62154 2.20556 2.68779 2.95159 3.06487 3.15219 3.17459 3.51079 3.83405 4.13950 4.46717 4.76449 4.89153 4.92758 4.96871 5.01766 5.14587 5.33127 5.37351 5.41287 5.55096 5.64575 5.67793 5.78950 5.81193 5.89435 6.20589 6.32387 6.37710 6.51142 6.65741 6.78121 6.81306 7.14411 7.22225 7.27620 7.71946 8.19000 8.53481 8.69804 9.22239 10.77202 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.004144 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.066449 B = 6754.938111 C = 8742.724448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.553 5.553 11 C 0.543 3.457 12 O -0.531 6.531 13 C -0.113 4.113 14 S -0.193 6.193 15 C -0.107 4.107 16 C 0.081 3.919 17 N -0.848 5.848 18 C 0.187 3.813 19 C -0.095 4.095 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.026 4.026 23 Cl -0.079 7.079 24 C -0.117 4.117 25 H 0.269 0.731 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.341 0.659 35 H 0.344 0.656 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 -4.389 -3.058 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.089 3.911 10 N -0.281 5.281 11 C 0.330 3.670 12 O -0.408 6.408 13 C -0.263 4.263 14 S 0.032 5.968 15 C -0.256 4.256 16 C -0.051 4.051 17 N -0.379 5.379 18 C 0.095 3.905 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.053 4.053 23 Cl -0.051 7.051 24 C -0.137 4.137 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.598 -5.815 -2.668 11.535 hybrid contribution 0.693 2.554 -0.096 2.648 sum 10.291 -3.261 -2.764 11.144 Atomic orbital electron populations 1.69870 1.06175 1.27438 1.48542 1.24833 0.94731 0.98806 0.93992 0.86987 0.80628 0.84076 0.78999 1.19740 1.20556 1.18778 1.21266 0.88477 0.95295 1.53499 0.90057 1.20023 0.96527 0.76439 0.98158 1.45480 1.64184 1.16119 1.02320 1.19590 0.77597 0.85464 0.84314 1.90704 1.43660 1.19393 1.86996 1.23502 1.08175 1.01210 0.93462 1.87071 1.83917 1.27592 0.98233 1.23439 1.05472 1.01181 0.95518 1.21378 0.98739 0.96677 0.88293 1.58683 1.66926 1.07715 1.04582 1.17298 0.93102 0.93285 0.86783 1.21411 0.98202 0.95434 0.96418 1.20939 0.97222 0.99758 0.93797 1.20959 0.95827 0.96520 1.00655 1.20586 0.93281 0.98387 0.93034 1.98345 1.49321 1.90586 1.66807 1.21036 0.97755 1.01272 0.93639 0.92120 0.94190 0.94797 0.87454 0.85198 0.88961 0.90421 0.94589 0.89959 0.84680 0.84264 0.85202 0.84895 0.85135 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 18.93 27.47 -169.99 -4.67 14.26 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 7 C -0.55 -13.64 9.71 -34.44 -0.33 -13.97 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 C 0.21 4.37 3.95 -5.19 -0.02 4.35 16 10 N -0.55 -11.00 2.50 -114.74 -0.29 -11.29 16 11 C 0.54 10.71 7.55 -10.99 -0.08 10.62 16 12 O -0.53 -11.53 15.63 5.55 0.09 -11.44 16 13 C -0.11 -1.93 5.09 36.01 0.18 -1.75 16 14 S -0.19 -3.04 20.87 -107.50 -2.24 -5.28 16 15 C -0.11 -1.32 6.20 37.16 0.23 -1.09 16 16 C 0.08 0.85 6.79 -3.82 -0.03 0.82 16 17 N -0.85 -7.68 9.62 -10.37 -0.10 -7.78 16 18 C 0.19 3.54 4.74 -83.70 -0.40 3.14 16 19 C -0.09 -1.68 9.56 -39.39 -0.38 -2.06 16 20 C -0.10 -1.42 10.04 -39.62 -0.40 -1.82 16 21 C -0.12 -1.67 9.83 -39.51 -0.39 -2.06 16 22 C -0.03 -0.39 6.32 -39.52 -0.25 -0.64 16 23 Cl -0.08 -1.06 28.95 -51.86 -1.50 -2.56 16 24 C -0.12 -1.99 9.47 -39.36 -0.37 -2.36 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.04 0.85 6.92 -51.93 -0.36 0.49 16 27 H 0.03 0.66 5.90 -51.93 -0.31 0.36 16 28 H 0.11 1.64 7.26 -51.92 -0.38 1.26 16 29 H 0.13 2.34 7.91 -51.93 -0.41 1.93 16 30 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.34 2.66 8.99 -39.29 -0.35 2.30 16 35 H 0.34 2.42 9.08 -39.29 -0.36 2.06 16 36 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -29.29 361.71 -9.96 -39.24 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.14 Total: 8.11 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.33 Total: -4.82 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.39 Total: -42.96 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.67 Total: 14.26 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.24 Total: -5.28 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.29 -9.96 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.170 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds