Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48501 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47200 * 299.99705 * 3 2 1 6 6 H 1.48493 * 109.47284 * 59.99844 * 3 2 1 7 7 C 1.37874 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99495 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00387 * 0.28088 * 7 2 1 10 10 O 1.42104 * 106.40144 * 293.26026 * 9 7 2 11 11 O 1.42100 * 106.40400 * 66.17872 * 9 7 2 12 12 C 1.76199 * 107.21937 * 179.72266 * 9 7 2 13 13 C 1.38452 * 119.89468 * 89.99819 * 12 9 7 14 14 C 1.38204 * 120.34374 * 179.97438 * 13 12 9 15 15 C 1.38316 * 120.11393 * 0.02562 * 14 13 12 16 16 F 1.35098 * 120.11142 * 179.97438 * 15 14 13 17 17 C 1.39823 * 119.78200 * 0.02562 * 15 14 13 18 18 C 1.47698 * 120.17064 * 180.02562 * 17 15 14 19 19 O 1.21569 * 119.99511 * 325.16126 * 18 17 15 20 20 N 1.34778 * 120.00165 * 145.15397 * 18 17 15 21 21 C 1.47465 * 124.94331 * 184.28138 * 20 18 17 22 22 C 1.55450 * 103.27578 * 157.49992 * 21 20 18 23 23 C 1.55267 * 99.93109 * 34.15077 * 22 21 20 24 24 N 1.36597 * 124.94331 * 4.59047 * 20 18 17 25 25 C 1.37859 * 119.88805 * 269.72389 * 12 9 7 26 26 H 0.97004 * 119.99818 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.82995 * 0.02562 * 13 12 9 28 28 H 1.07998 * 119.94395 * 180.02562 * 14 13 12 29 29 H 1.08999 * 110.64289 * 276.06349 * 21 20 18 30 30 H 1.09005 * 110.64004 * 39.12008 * 21 20 18 31 31 H 1.09006 * 111.48527 * 276.42974 * 22 21 20 32 32 H 1.08999 * 111.19886 * 151.75778 * 22 21 20 33 33 H 1.09002 * 110.65965 * 207.60727 * 23 22 21 34 34 H 1.08996 * 110.66161 * 84.49376 * 23 22 21 35 35 H 1.00899 * 111.00024 * 303.28605 * 24 20 18 36 36 H 1.08005 * 120.06192 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7200 -0.0063 10 8 0.4514 -2.8008 1.2431 11 8 0.4514 -2.7897 -1.2563 12 6 2.3203 -4.0132 -0.0119 13 6 2.7890 -4.5249 1.1862 14 6 3.7272 -5.5396 1.1925 15 6 4.2050 -6.0506 -0.0007 16 9 5.1225 -7.0421 0.0056 17 6 3.7359 -5.5367 -1.2136 18 6 4.2398 -6.0764 -2.4928 19 8 5.3957 -6.4413 -2.5853 20 7 3.4180 -6.1643 -3.5574 21 6 3.7781 -6.7657 -4.8549 22 6 2.4001 -7.1394 -5.4698 23 6 1.5362 -5.9721 -4.9203 24 7 2.1324 -5.7041 -3.5936 25 6 2.7827 -4.5160 -1.2094 26 1 -0.4850 0.8401 0.0004 27 1 2.4188 -4.1297 2.1206 28 1 4.0880 -5.9343 2.1308 29 1 4.2979 -6.0421 -5.4828 30 1 4.3877 -7.6575 -4.7091 31 1 2.0460 -8.1019 -5.1005 32 1 2.4377 -7.1255 -6.5590 33 1 0.4951 -6.2787 -4.8192 34 1 1.6196 -5.0961 -5.5635 35 1 1.5793 -6.1180 -2.8582 36 1 2.4118 -4.1182 -2.1425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -94.381489 kcal Electronic energy + Delta-G solvation = -26052.270033 eV Core-core repulsion = 21965.234509 eV Total energy + Delta-G solvation = -4087.035524 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -48.93384 -40.64034 -38.64190 -37.63950 -35.33924 -34.05872 -33.15848 -32.60865 -30.99673 -30.53462 -30.50013 -26.20648 -25.29691 -23.24628 -22.92091 -22.06953 -20.54792 -18.94543 -18.29500 -17.44506 -16.97857 -16.93491 -16.24108 -16.15492 -15.67791 -15.45096 -14.91571 -14.52492 -14.39194 -14.05249 -14.00903 -13.83887 -13.54215 -13.33113 -13.09397 -12.88078 -12.74346 -12.34370 -12.00180 -11.75003 -11.69394 -11.35137 -11.26071 -11.24097 -10.60612 -10.37729 -10.35036 -10.26145 -10.16186 -9.73727 -9.31290 -9.07531 -9.02265 -8.74719 -8.02756 -6.78087 -5.40910 0.72839 1.13099 2.01336 2.48215 2.64311 3.03890 3.12687 3.20640 3.54698 3.76818 4.03469 4.16249 4.22516 4.55055 4.57748 4.58920 4.73563 4.85944 5.15530 5.18231 5.26463 5.33935 5.43503 5.48104 5.50152 5.60714 5.74726 5.75873 5.83644 6.05119 6.16192 6.21152 6.27992 6.68709 6.81430 6.85434 7.24695 7.73554 7.88761 8.08048 8.80947 10.16627 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.004600 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.364903 B = 6085.523481 C = 7006.659159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.133 3.867 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.001 5.001 8 H 0.106 0.894 9 S 2.605 3.395 10 O -0.982 6.982 11 O -0.975 6.975 12 C -0.667 4.667 13 C 0.027 3.973 14 C -0.190 4.190 15 C 0.184 3.816 16 F -0.123 7.123 17 C -0.202 4.202 18 C 0.589 3.411 19 O -0.528 6.528 20 N -0.463 5.463 21 C 0.097 3.903 22 C -0.162 4.162 23 C 0.039 3.961 24 N -0.454 5.454 25 C 0.043 3.957 26 H 0.292 0.708 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.342 0.658 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -11.481 -6.575 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.195 1.195 7 C -1.135 5.135 8 H 0.124 0.876 9 S 2.784 3.216 10 O -0.979 6.979 11 O -0.972 6.972 12 C -0.747 4.747 13 C 0.009 3.991 14 C -0.209 4.209 15 C 0.163 3.837 16 F -0.101 7.101 17 C -0.207 4.207 18 C 0.378 3.622 19 O -0.403 6.403 20 N -0.286 5.286 21 C -0.026 4.026 22 C -0.202 4.202 23 C -0.090 4.090 24 N -0.179 5.179 25 C 0.024 3.976 26 H 0.102 0.898 27 H 0.173 0.827 28 H 0.164 0.836 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.161 0.839 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.451 -11.218 -6.699 13.515 hybrid contribution 1.182 -0.318 0.068 1.226 sum 4.633 -11.536 -6.631 14.089 Atomic orbital electron populations 1.69898 1.06715 1.30841 1.39616 1.24754 0.94549 1.00767 0.88410 0.86085 0.80547 0.80062 0.78684 1.18451 1.19464 1.19479 1.30132 1.06056 1.09900 1.67363 0.87575 1.01196 0.72959 0.73847 0.73566 1.93350 1.71984 1.87626 1.44912 1.93356 1.71832 1.87511 1.44494 1.31881 1.22766 1.22329 0.97707 1.21122 0.89538 0.90253 0.98235 1.21188 1.01905 1.01030 0.96785 1.17819 0.86705 0.85690 0.93458 1.91550 1.63156 1.58065 1.97331 1.19855 1.04868 1.04206 0.91743 1.17497 0.84409 0.78478 0.81795 1.90826 1.16050 1.50125 1.83291 1.47954 1.07960 1.59329 1.13335 1.22738 0.97383 0.98668 0.83820 1.23475 0.94960 0.99348 1.02373 1.23486 0.98239 0.98164 0.89081 1.62810 0.92808 1.55189 1.07142 1.21537 0.87569 0.89251 0.99263 0.89759 0.82676 0.83586 0.90046 0.89691 0.90293 0.88456 0.89162 0.88194 0.83888 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.39 13.19 55.43 0.73 -22.66 16 2 C 0.13 3.54 5.46 -17.82 -0.10 3.44 16 3 Si 0.92 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -1.00 -26.14 9.58 30.60 0.29 -25.85 16 8 H 0.11 2.56 7.81 -52.48 -0.41 2.15 16 9 S 2.60 64.35 4.65 -107.50 -0.50 63.85 16 10 O -0.98 -26.32 17.15 -57.17 -0.98 -27.30 16 11 O -0.97 -25.81 17.14 -57.17 -0.98 -26.79 16 12 C -0.67 -13.16 5.81 -39.64 -0.23 -13.39 16 13 C 0.03 0.47 9.51 -39.52 -0.38 0.09 16 14 C -0.19 -2.85 10.01 -39.56 -0.40 -3.24 16 15 C 0.18 3.06 7.24 -38.96 -0.28 2.77 16 16 F -0.12 -2.07 16.11 2.25 0.04 -2.03 16 17 C -0.20 -3.52 5.62 -104.91 -0.59 -4.11 16 18 C 0.59 10.13 7.46 -12.40 -0.09 10.04 16 19 O -0.53 -10.31 16.33 5.30 0.09 -10.23 16 20 N -0.46 -6.52 3.75 -59.31 -0.22 -6.74 16 21 C 0.10 1.03 6.99 -2.21 -0.02 1.01 16 22 C -0.16 -1.20 7.33 -24.23 -0.18 -1.38 16 23 C 0.04 0.36 7.74 -2.07 -0.02 0.34 16 24 N -0.45 -5.87 5.04 -8.69 -0.04 -5.91 16 25 C 0.04 0.79 7.93 -39.19 -0.31 0.48 16 26 H 0.29 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.16 2.43 7.60 -52.49 -0.40 2.03 16 28 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.34 4.25 8.27 -181.37 -1.50 2.75 16 36 H 0.18 3.23 5.85 -52.48 -0.31 2.92 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -34.50 329.63 -8.92 -43.43 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.71 Total: 4.47 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -2.29 Total: -29.80 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.46 Total: -35.31 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -1.87 Total: -64.32 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 64.35 SS G_CDS: -0.50 Total: 63.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.50 -8.92 -43.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.953 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds