Wall clock time and date at job start Tue Mar 31 2020 14:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48501 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47200 * 299.99705 * 3 2 1 6 6 H 1.48493 * 109.47284 * 59.99844 * 3 2 1 7 7 C 1.37874 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99495 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00387 * 0.28088 * 7 2 1 10 10 O 1.42104 * 106.40144 * 293.26026 * 9 7 2 11 11 O 1.42100 * 106.40400 * 66.17872 * 9 7 2 12 12 C 1.76199 * 107.21937 * 179.72266 * 9 7 2 13 13 C 1.38452 * 119.89468 * 89.99819 * 12 9 7 14 14 C 1.38204 * 120.34374 * 179.97438 * 13 12 9 15 15 C 1.38316 * 120.11393 * 0.02562 * 14 13 12 16 16 F 1.35098 * 120.11142 * 179.97438 * 15 14 13 17 17 C 1.39823 * 119.78200 * 0.02562 * 15 14 13 18 18 C 1.47698 * 120.17064 * 180.02562 * 17 15 14 19 19 O 1.21569 * 119.99511 * 325.16126 * 18 17 15 20 20 N 1.34778 * 120.00165 * 145.15397 * 18 17 15 21 21 C 1.47465 * 124.94331 * 184.28138 * 20 18 17 22 22 C 1.55450 * 103.27578 * 157.49992 * 21 20 18 23 23 C 1.55267 * 99.93109 * 34.15077 * 22 21 20 24 24 N 1.36597 * 124.94331 * 4.59047 * 20 18 17 25 25 C 1.37859 * 119.88805 * 269.72389 * 12 9 7 26 26 H 0.97004 * 119.99818 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.82995 * 0.02562 * 13 12 9 28 28 H 1.07998 * 119.94395 * 180.02562 * 14 13 12 29 29 H 1.08999 * 110.64289 * 276.06349 * 21 20 18 30 30 H 1.09005 * 110.64004 * 39.12008 * 21 20 18 31 31 H 1.09006 * 111.48527 * 276.42974 * 22 21 20 32 32 H 1.08999 * 111.19886 * 151.75778 * 22 21 20 33 33 H 1.09002 * 110.65965 * 207.60727 * 23 22 21 34 34 H 1.08996 * 110.66161 * 84.49376 * 23 22 21 35 35 H 1.00899 * 111.00024 * 303.28605 * 24 20 18 36 36 H 1.08005 * 120.06192 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7200 -0.0063 10 8 0.4514 -2.8008 1.2431 11 8 0.4514 -2.7897 -1.2563 12 6 2.3203 -4.0132 -0.0119 13 6 2.7890 -4.5249 1.1862 14 6 3.7272 -5.5396 1.1925 15 6 4.2050 -6.0506 -0.0007 16 9 5.1225 -7.0421 0.0056 17 6 3.7359 -5.5367 -1.2136 18 6 4.2398 -6.0764 -2.4928 19 8 5.3957 -6.4413 -2.5853 20 7 3.4180 -6.1643 -3.5574 21 6 3.7781 -6.7657 -4.8549 22 6 2.4001 -7.1394 -5.4698 23 6 1.5362 -5.9721 -4.9203 24 7 2.1324 -5.7041 -3.5936 25 6 2.7827 -4.5160 -1.2094 26 1 -0.4850 0.8401 0.0004 27 1 2.4188 -4.1297 2.1206 28 1 4.0880 -5.9343 2.1308 29 1 4.2979 -6.0421 -5.4828 30 1 4.3877 -7.6575 -4.7091 31 1 2.0460 -8.1019 -5.1005 32 1 2.4377 -7.1255 -6.5590 33 1 0.4951 -6.2787 -4.8192 34 1 1.6196 -5.0961 -5.5635 35 1 1.5793 -6.1180 -2.8582 36 1 2.4118 -4.1182 -2.1425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:46 Heat of formation + Delta-G solvation = -120.190698 kcal Electronic energy + Delta-G solvation = -26053.389204 eV Core-core repulsion = 21965.234509 eV Total energy + Delta-G solvation = -4088.154696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -50.26658 -41.78460 -39.89630 -38.89490 -37.35212 -36.07830 -35.15192 -33.70658 -32.13168 -31.95555 -31.48282 -28.22983 -26.42838 -24.46955 -24.24521 -22.92187 -21.74461 -20.71141 -19.70465 -18.89788 -18.59082 -18.12219 -17.95553 -17.32199 -17.05847 -16.89988 -16.57391 -15.82379 -15.76375 -15.63482 -15.49835 -14.99489 -14.68305 -14.50204 -14.36491 -14.11729 -14.00523 -13.80543 -13.61493 -13.22426 -12.98605 -12.88591 -12.46850 -12.41670 -12.33683 -12.25418 -12.23019 -11.71388 -11.30614 -11.22950 -11.22456 -10.86734 -10.42070 -10.29546 -9.07296 -8.74201 -7.46752 -0.67130 -0.24662 0.14496 1.29955 1.37102 1.39332 1.42241 1.56171 2.15764 2.26199 2.60473 2.75197 2.82349 3.39660 3.42446 3.47218 3.63596 3.78579 3.81779 3.89984 4.00914 4.12562 4.20462 4.40674 4.54303 4.58972 4.65633 4.72692 4.77054 4.83641 4.91371 5.05837 5.07820 5.21584 5.29488 5.48127 5.75215 5.90472 6.56722 6.80199 6.90400 8.23284 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.004600 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.364903 B = 6085.523481 C = 7006.659159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.256 1.256 7 C -1.025 5.025 8 H 0.118 0.882 9 S 2.606 3.394 10 O -1.014 7.014 11 O -1.006 7.006 12 C -0.674 4.674 13 C 0.024 3.976 14 C -0.166 4.166 15 C 0.183 3.817 16 F -0.121 7.121 17 C -0.205 4.205 18 C 0.580 3.420 19 O -0.561 6.561 20 N -0.457 5.457 21 C 0.084 3.916 22 C -0.142 4.142 23 C 0.033 3.967 24 N -0.477 5.477 25 C 0.042 3.958 26 H 0.301 0.699 27 H 0.169 0.831 28 H 0.190 0.810 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.343 0.657 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -12.034 -6.878 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.137 4.137 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.183 1.183 6 H -0.180 1.180 7 C -1.158 5.158 8 H 0.136 0.864 9 S 2.792 3.208 10 O -1.011 7.011 11 O -1.004 7.004 12 C -0.760 4.760 13 C 0.005 3.995 14 C -0.185 4.185 15 C 0.162 3.838 16 F -0.099 7.099 17 C -0.210 4.210 18 C 0.368 3.632 19 O -0.439 6.439 20 N -0.277 5.277 21 C -0.037 4.037 22 C -0.181 4.181 23 C -0.095 4.095 24 N -0.203 5.203 25 C 0.023 3.977 26 H 0.111 0.889 27 H 0.186 0.814 28 H 0.207 0.793 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.162 0.838 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.474 -11.743 -7.037 14.402 hybrid contribution 0.855 -0.276 0.110 0.905 sum 5.329 -12.019 -6.926 14.860 Atomic orbital electron populations 1.69972 1.08456 1.32384 1.40837 1.25909 0.95406 1.04859 0.87572 0.85154 0.79432 0.75405 0.79583 1.17475 1.18263 1.18048 1.30545 1.06916 1.11111 1.67231 0.86390 1.00541 0.73496 0.74322 0.72437 1.93299 1.73672 1.88353 1.45786 1.93304 1.73532 1.88212 1.45311 1.31080 1.23232 1.22086 0.99601 1.21338 0.89825 0.90706 0.97639 1.21506 0.99888 0.99164 0.97917 1.18023 0.86463 0.85523 0.93760 1.91558 1.63075 1.57967 1.97330 1.19948 1.04419 1.03858 0.92734 1.17481 0.84398 0.78836 0.82454 1.90797 1.17174 1.52009 1.83937 1.48021 1.08218 1.57864 1.13562 1.23047 0.99528 0.98633 0.82522 1.23457 0.91924 0.98823 1.03864 1.23670 0.99361 0.99148 0.87279 1.62784 0.92516 1.55890 1.09132 1.21385 0.88050 0.89711 0.98559 0.88913 0.81374 0.79270 0.89674 0.89662 0.89331 0.85496 0.87203 0.88058 0.83760 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.23 13.19 21.45 0.28 -49.95 16 2 C 0.08 4.06 5.46 84.65 0.46 4.52 16 3 Si 0.99 39.87 29.54 68.60 2.03 41.90 16 4 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 7 C -1.02 -54.23 9.58 67.73 0.65 -53.58 16 8 H 0.12 5.72 7.81 -2.91 -0.02 5.70 16 9 S 2.61 132.10 4.65 -56.49 -0.26 131.84 16 10 O -1.01 -55.87 17.15 -128.00 -2.20 -58.07 16 11 O -1.01 -55.28 17.14 -128.00 -2.19 -57.47 16 12 C -0.67 -26.65 5.81 22.23 0.13 -26.52 16 13 C 0.02 0.78 9.51 22.31 0.21 0.99 16 14 C -0.17 -4.52 10.01 22.28 0.22 -4.30 16 15 C 0.18 5.76 7.24 22.67 0.16 5.93 16 16 F -0.12 -3.85 16.11 44.97 0.72 -3.13 16 17 C -0.20 -7.04 5.62 -20.05 -0.11 -7.15 16 18 C 0.58 19.83 7.46 86.74 0.65 20.47 16 19 O -0.56 -21.86 16.33 -3.93 -0.06 -21.93 16 20 N -0.46 -12.62 3.75 -459.83 -1.73 -14.34 16 21 C 0.08 1.69 6.99 87.04 0.61 2.30 16 22 C -0.14 -1.73 7.33 32.22 0.24 -1.49 16 23 C 0.03 0.55 7.74 86.89 0.67 1.22 16 24 N -0.48 -12.12 5.04 -181.40 -0.91 -13.04 16 25 C 0.04 1.56 7.93 22.52 0.18 1.74 16 26 H 0.30 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.17 5.05 7.60 -2.91 -0.02 5.02 16 28 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.72 8.10 -2.38 -0.02 1.70 16 31 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.34 8.50 8.27 -210.56 -1.74 6.76 16 36 H 0.17 6.39 5.85 -2.91 -0.02 6.37 16 Total: -1.00 -76.49 329.63 -0.85 -77.34 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.59 Total: 22.72 kcal Atomic # 6 Polarization: -59.94 SS G_CDS: 4.07 Total: -55.87 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -2.36 Total: -77.33 kcal Atomic # 8 Polarization: -133.01 SS G_CDS: -4.45 Total: -137.47 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.72 Total: -3.13 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Atomic # 16 Polarization: 132.10 SS G_CDS: -0.26 Total: 131.84 kcal Total: -76.49 -0.85 -77.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.854 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds