Wall clock time and date at job start Tue Mar 31 2020 14:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48503 * 109.46995 * 269.99957 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00317 * 3 2 1 6 6 H 1.48500 * 109.46750 * 150.00201 * 3 2 1 7 7 C 1.39044 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36880 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99581 * 180.02562 * 9 7 2 11 11 O 1.21585 * 119.99990 * 0.02562 * 10 9 7 12 12 C 1.47734 * 119.99632 * 180.02562 * 10 9 7 13 13 C 1.39693 * 120.51178 * 0.02562 * 12 10 9 14 14 N 1.31679 * 120.81169 * 179.70445 * 13 12 10 15 15 C 1.31828 * 122.01632 * 0.56329 * 14 13 12 16 16 C 1.50703 * 119.53338 * 179.70768 * 15 14 13 17 17 F 1.39901 * 109.47446 * 237.64204 * 16 15 14 18 18 F 1.39900 * 109.47129 * 117.64061 * 16 15 14 19 19 F 1.39901 * 109.47138 * 357.64074 * 16 15 14 20 20 C 1.39379 * 120.93325 * 359.43593 * 15 14 13 21 21 C 1.48482 * 120.45886 * 180.25497 * 20 15 14 22 22 N 1.34040 * 126.67697 * 5.12595 * 21 20 15 23 23 N 1.28979 * 107.27179 * 179.87215 * 22 21 20 24 24 N 1.28734 * 108.94122 * 0.40239 * 23 22 21 25 25 H 0.97001 * 125.33832 * 179.74678 * 24 23 22 26 26 N 1.28866 * 109.31517 * 359.74391 * 24 23 22 27 27 C 1.39451 * 119.07985 * 0.26938 * 20 15 14 28 28 H 0.97005 * 119.99838 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 30 30 H 1.07994 * 119.59326 * 359.97438 * 13 12 10 31 31 H 1.07999 * 120.91358 * 180.02562 * 27 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5452 1.4400 0.7000 7 6 2.0088 -1.2042 -0.0005 8 1 3.0888 -1.2042 -0.0001 9 7 1.3243 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2141 -3.5568 -0.0001 12 6 1.2595 -4.8362 -0.0011 13 6 -0.1374 -4.8486 -0.0022 14 7 -0.8018 -5.9854 -0.0085 15 6 -0.1894 -7.1529 -0.0031 16 6 -1.0055 -8.4198 -0.0042 17 9 -0.6699 -9.1918 1.1132 18 9 -0.7382 -9.1457 -1.1699 19 9 -2.3662 -8.0981 0.0430 20 6 1.2021 -7.2320 -0.0021 21 6 1.8809 -8.5526 -0.0017 22 7 1.2947 -9.7541 -0.0982 23 7 2.2306 -10.6408 -0.0620 24 7 3.3656 -10.0458 0.0607 25 1 4.2276 -10.4872 0.1152 26 7 3.1767 -8.7716 0.0996 27 6 1.9480 -6.0537 -0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 0.3543 -2.3895 -0.0005 30 1 -0.6790 -3.9143 -0.0022 31 1 3.0276 -6.0805 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:52 Heat of formation + Delta-G solvation = -0.284284 kcal Electronic energy + Delta-G solvation = -27357.215525 eV Core-core repulsion = 22649.172383 eV Total energy + Delta-G solvation = -4708.043142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.83982 -47.34642 -47.30611 -44.62807 -40.44077 -38.14499 -34.81160 -34.48152 -34.04477 -32.53198 -31.78269 -31.18352 -27.25331 -25.54682 -25.04333 -24.44179 -22.72894 -22.44431 -20.23179 -19.36947 -18.54062 -18.38627 -18.22435 -18.14138 -17.32900 -16.99014 -16.19568 -15.47649 -15.04440 -14.56129 -14.48363 -14.19551 -14.11168 -14.09646 -13.90949 -13.72413 -13.45696 -13.34504 -13.30307 -13.05351 -12.94042 -12.42772 -11.93125 -11.81600 -11.59633 -11.37579 -11.35447 -11.28772 -10.69181 -10.56053 -9.98088 -9.94616 -9.66175 -9.11407 -8.77429 -8.41168 -6.89870 -4.14798 0.15462 0.81046 1.04407 2.04590 2.11419 2.65765 2.94490 3.06585 3.11290 3.23747 3.35546 3.71437 3.80701 3.92630 4.06860 4.07958 4.51517 4.63331 4.80781 4.85773 4.96427 4.97207 5.07928 5.30530 5.34418 5.52894 5.95941 6.16481 6.23544 6.34779 7.11269 7.58325 7.61674 7.94489 8.14531 8.72561 9.03862 9.63009 10.24780 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003343 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.975170 B = 8374.319470 C = 9589.587901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.283 4.283 8 H 0.116 0.884 9 N -0.524 5.524 10 C 0.452 3.548 11 O -0.592 6.592 12 C -0.109 4.109 13 C 0.124 3.876 14 N -0.434 5.434 15 C 0.053 3.947 16 C 0.530 3.470 17 F -0.165 7.165 18 F -0.161 7.161 19 F -0.167 7.167 20 C -0.025 4.025 21 C 0.212 3.788 22 N -0.256 5.256 23 N -0.044 5.044 24 N -0.226 5.226 25 H 0.477 0.523 26 N -0.275 5.275 27 C -0.003 4.003 28 H 0.283 0.717 29 H 0.395 0.605 30 H 0.177 0.823 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 -14.779 0.189 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.413 4.413 8 H 0.133 0.867 9 N -0.156 5.156 10 C 0.241 3.759 11 O -0.479 6.479 12 C -0.116 4.116 13 C -0.037 4.037 14 N -0.141 5.141 15 C -0.090 4.090 16 C 0.475 3.525 17 F -0.147 7.147 18 F -0.143 7.143 19 F -0.148 7.148 20 C -0.031 4.031 21 C -0.068 4.068 22 N -0.129 5.129 23 N -0.039 5.039 24 N -0.072 5.072 25 H 0.331 0.669 26 N -0.127 5.127 27 C -0.032 4.032 28 H 0.093 0.907 29 H 0.231 0.769 30 H 0.194 0.806 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.708 -15.215 0.163 15.233 hybrid contribution 1.048 0.802 0.051 1.321 sum 1.755 -14.413 0.214 14.521 Atomic orbital electron populations 1.69575 1.06358 1.29765 1.44875 1.25552 0.95808 1.00671 0.96060 0.85670 0.79386 0.79388 0.78952 1.19768 1.20368 1.18818 1.20044 0.94185 0.81795 1.45276 0.86676 1.42029 1.09716 1.04938 1.58951 1.17220 0.87484 0.82476 0.88762 1.90646 1.12617 1.86254 1.58412 1.21509 0.94634 0.96147 0.99272 1.23215 0.90928 0.95774 0.93805 1.67211 1.39859 0.96899 1.10092 1.20919 0.89677 0.93403 1.05025 1.17563 0.77584 0.82689 0.74704 1.93214 1.92132 1.76780 1.52550 1.93231 1.93556 1.79014 1.48471 1.93209 1.32866 1.92682 1.96087 1.17622 0.91677 0.88331 1.05441 1.23294 0.86552 0.94199 1.02794 1.76295 1.22642 0.97024 1.16971 1.78905 0.88224 1.22414 1.14384 1.47743 1.11491 1.02390 1.45584 0.66883 1.74971 1.18672 0.98224 1.20835 1.21648 1.01894 0.88488 0.91187 0.90659 0.76945 0.80596 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.74 13.05 55.50 0.72 -20.01 16 2 C 0.03 0.60 5.50 -17.45 -0.10 0.50 16 3 Si 0.94 18.54 29.55 -169.99 -5.02 13.52 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.28 -7.02 9.68 -15.00 -0.15 -7.16 16 8 H 0.12 2.97 7.15 -52.49 -0.38 2.60 16 9 N -0.52 -11.93 5.23 -11.87 -0.06 -11.99 16 10 C 0.45 9.99 7.73 -12.38 -0.10 9.89 16 11 O -0.59 -14.98 15.99 5.29 0.08 -14.89 16 12 C -0.11 -1.97 5.89 -104.86 -0.62 -2.59 16 13 C 0.12 2.03 10.71 -17.07 -0.18 1.85 16 14 N -0.43 -7.21 9.70 -8.87 -0.09 -7.29 16 15 C 0.05 0.86 6.29 -82.17 -0.52 0.35 16 16 C 0.53 8.24 2.78 36.01 0.10 8.34 16 17 F -0.17 -2.56 14.88 2.25 0.03 -2.53 16 18 F -0.16 -2.50 15.00 2.25 0.03 -2.47 16 19 F -0.17 -2.61 16.85 2.25 0.04 -2.57 16 20 C -0.02 -0.39 5.85 -104.80 -0.61 -1.00 16 21 C 0.21 3.12 7.48 -156.30 -1.17 1.95 16 22 N -0.26 -3.74 7.37 32.16 0.24 -3.50 16 23 N -0.04 -0.53 13.47 60.35 0.81 0.29 16 24 N -0.23 -2.09 7.90 60.35 0.48 -1.61 16 25 H 0.48 1.87 8.96 -340.37 -3.05 -1.18 16 26 N -0.28 -3.47 12.16 32.17 0.39 -3.08 16 27 C 0.00 -0.06 9.37 -38.52 -0.36 -0.42 16 28 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.40 8.36 5.95 -40.82 -0.24 8.11 16 30 H 0.18 2.63 6.41 -52.49 -0.34 2.29 16 31 H 0.16 2.69 7.64 -52.49 -0.40 2.29 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -29.46 298.15 -5.08 -34.55 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.54 Total: 5.39 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -3.70 Total: 11.72 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 2.49 Total: -47.21 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.08 Total: -14.89 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.11 Total: -7.56 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.46 -5.08 -34.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.265 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds