Wall clock time and date at job start Tue Mar 31 2020 14:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48503 * 109.46995 * 269.99957 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00317 * 3 2 1 6 6 H 1.48500 * 109.46750 * 150.00201 * 3 2 1 7 7 C 1.39044 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36880 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99581 * 180.02562 * 9 7 2 11 11 O 1.21585 * 119.99990 * 0.02562 * 10 9 7 12 12 C 1.47734 * 119.99632 * 180.02562 * 10 9 7 13 13 C 1.39693 * 120.51178 * 0.02562 * 12 10 9 14 14 N 1.31679 * 120.81169 * 179.70445 * 13 12 10 15 15 C 1.31828 * 122.01632 * 0.56329 * 14 13 12 16 16 C 1.50703 * 119.53338 * 179.70768 * 15 14 13 17 17 F 1.39901 * 109.47446 * 237.64204 * 16 15 14 18 18 F 1.39900 * 109.47129 * 117.64061 * 16 15 14 19 19 F 1.39901 * 109.47138 * 357.64074 * 16 15 14 20 20 C 1.39379 * 120.93325 * 359.43593 * 15 14 13 21 21 C 1.48482 * 120.45886 * 180.25497 * 20 15 14 22 22 N 1.34040 * 126.67697 * 5.12595 * 21 20 15 23 23 N 1.28979 * 107.27179 * 179.87215 * 22 21 20 24 24 N 1.28734 * 108.94122 * 0.40239 * 23 22 21 25 25 H 0.97001 * 125.33832 * 179.74678 * 24 23 22 26 26 N 1.28866 * 109.31517 * 359.74391 * 24 23 22 27 27 C 1.39451 * 119.07985 * 0.26938 * 20 15 14 28 28 H 0.97005 * 119.99838 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 30 30 H 1.07994 * 119.59326 * 359.97438 * 13 12 10 31 31 H 1.07999 * 120.91358 * 180.02562 * 27 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5452 1.4400 0.7000 7 6 2.0088 -1.2042 -0.0005 8 1 3.0888 -1.2042 -0.0001 9 7 1.3243 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2141 -3.5568 -0.0001 12 6 1.2595 -4.8362 -0.0011 13 6 -0.1374 -4.8486 -0.0022 14 7 -0.8018 -5.9854 -0.0085 15 6 -0.1894 -7.1529 -0.0031 16 6 -1.0055 -8.4198 -0.0042 17 9 -0.6699 -9.1918 1.1132 18 9 -0.7382 -9.1457 -1.1699 19 9 -2.3662 -8.0981 0.0430 20 6 1.2021 -7.2320 -0.0021 21 6 1.8809 -8.5526 -0.0017 22 7 1.2947 -9.7541 -0.0982 23 7 2.2306 -10.6408 -0.0620 24 7 3.3656 -10.0458 0.0607 25 1 4.2276 -10.4872 0.1152 26 7 3.1767 -8.7716 0.0996 27 6 1.9480 -6.0537 -0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 0.3543 -2.3895 -0.0005 30 1 -0.6790 -3.9143 -0.0022 31 1 3.0276 -6.0805 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:52 Heat of formation + Delta-G solvation = -21.040079 kcal Electronic energy + Delta-G solvation = -27358.115564 eV Core-core repulsion = 22649.172383 eV Total energy + Delta-G solvation = -4708.943181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.09724 -48.60230 -48.55766 -45.63919 -41.88260 -39.87103 -36.27588 -35.87775 -35.17162 -34.06825 -33.34839 -32.50316 -28.70499 -26.98329 -26.39763 -25.55862 -24.14009 -23.68903 -21.70349 -20.60787 -20.10488 -19.74152 -19.48077 -19.41876 -18.52204 -18.32929 -17.58457 -16.81050 -16.73169 -16.01882 -15.76964 -15.73539 -15.48552 -15.47056 -15.17804 -14.97324 -14.86999 -14.70448 -14.66769 -14.49966 -14.39871 -13.60223 -13.49804 -13.11862 -12.97802 -12.67564 -12.50192 -12.42595 -12.33574 -12.11047 -11.65880 -11.39353 -11.10753 -10.57020 -10.42407 -10.18063 -8.62792 -6.03430 -1.15492 -0.51164 0.02088 0.91232 1.24109 1.34686 1.39651 1.46206 1.57991 1.77329 2.17357 2.28663 2.43386 2.46356 2.66255 2.75811 3.02697 3.18562 3.36605 3.46432 3.56287 3.62801 3.77520 3.98331 4.05408 4.28406 4.53385 4.78570 4.95529 5.31384 5.51778 5.82853 6.19976 6.38760 6.92594 6.94590 7.29930 7.87105 8.52750 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003343 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.975170 B = 8374.319470 C = 9589.587901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.002 4.002 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.329 4.329 8 H 0.093 0.907 9 N -0.532 5.532 10 C 0.460 3.540 11 O -0.625 6.625 12 C -0.120 4.120 13 C 0.142 3.858 14 N -0.440 5.440 15 C 0.063 3.937 16 C 0.535 3.465 17 F -0.162 7.162 18 F -0.159 7.159 19 F -0.166 7.166 20 C -0.017 4.017 21 C 0.193 3.807 22 N -0.277 5.277 23 N -0.040 5.040 24 N -0.191 5.191 25 H 0.499 0.501 26 N -0.274 5.274 27 C 0.008 3.992 28 H 0.287 0.713 29 H 0.401 0.599 30 H 0.191 0.809 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -16.380 0.213 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.206 4.206 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.458 4.458 8 H 0.111 0.889 9 N -0.165 5.165 10 C 0.248 3.752 11 O -0.514 6.514 12 C -0.125 4.125 13 C -0.018 4.018 14 N -0.147 5.147 15 C -0.080 4.080 16 C 0.479 3.521 17 F -0.144 7.144 18 F -0.140 7.140 19 F -0.147 7.147 20 C -0.023 4.023 21 C -0.087 4.087 22 N -0.150 5.150 23 N -0.035 5.035 24 N -0.042 5.042 25 H 0.359 0.641 26 N -0.126 5.126 27 C -0.021 4.021 28 H 0.097 0.903 29 H 0.237 0.763 30 H 0.208 0.792 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.712 -16.868 0.186 16.884 hybrid contribution 1.093 0.857 0.047 1.389 sum 1.805 -16.011 0.233 16.114 Atomic orbital electron populations 1.69613 1.07054 1.30524 1.46087 1.26201 0.96547 1.02779 0.95060 0.84836 0.78061 0.76081 0.78929 1.19371 1.19384 1.19314 1.19909 0.93505 0.83208 1.49205 0.88907 1.41931 1.09854 1.04691 1.60072 1.17714 0.87206 0.83453 0.86781 1.90610 1.14425 1.87170 1.59240 1.21183 0.95189 0.94741 1.01434 1.23366 0.90199 0.96388 0.91841 1.67320 1.39730 0.96954 1.10715 1.21221 0.90141 0.93683 1.03003 1.17424 0.77455 0.82351 0.74866 1.93223 1.92118 1.76610 1.52416 1.93240 1.93545 1.78863 1.48350 1.93218 1.32760 1.92672 1.96089 1.17591 0.91464 0.88804 1.04449 1.23078 0.87209 0.93828 1.04611 1.76281 1.23708 0.97078 1.17884 1.78857 0.88535 1.21838 1.14277 1.47808 1.12113 1.01415 1.42892 0.64122 1.74938 1.17799 0.99536 1.20361 1.21661 1.02084 0.88270 0.90102 0.90298 0.76288 0.79206 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -43.20 13.05 21.68 0.28 -42.92 16 2 C 0.00 -0.10 5.50 84.96 0.47 0.36 16 3 Si 1.00 38.45 29.55 68.60 2.03 40.47 16 4 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 6 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.33 -16.86 9.68 84.10 0.81 -16.05 16 8 H 0.09 5.04 7.15 -2.91 -0.02 5.02 16 9 N -0.53 -24.84 5.23 -309.72 -1.62 -26.46 16 10 C 0.46 20.63 7.73 86.75 0.67 21.30 16 11 O -0.63 -32.34 15.99 -3.98 -0.06 -32.40 16 12 C -0.12 -4.25 5.89 -20.02 -0.12 -4.37 16 13 C 0.14 4.50 10.71 85.07 0.91 5.41 16 14 N -0.44 -13.85 9.70 -181.98 -1.76 -15.61 16 15 C 0.06 1.91 6.29 42.83 0.27 2.18 16 16 C 0.53 15.53 2.78 71.24 0.20 15.73 16 17 F -0.16 -4.68 14.88 44.97 0.67 -4.01 16 18 F -0.16 -4.59 15.00 44.97 0.67 -3.92 16 19 F -0.17 -4.85 16.85 44.97 0.76 -4.09 16 20 C -0.02 -0.51 5.85 -19.98 -0.12 -0.63 16 21 C 0.19 5.26 7.48 137.39 1.03 6.28 16 22 N -0.28 -7.43 7.37 -52.17 -0.38 -7.81 16 23 N -0.04 -0.85 13.47 37.02 0.50 -0.35 16 24 N -0.19 -2.94 7.90 37.02 0.29 -2.65 16 25 H 0.50 2.21 8.96 -347.54 -3.12 -0.90 16 26 N -0.27 -6.19 12.16 -52.12 -0.63 -6.83 16 27 C 0.01 0.24 9.37 22.96 0.22 0.46 16 28 H 0.29 12.90 8.31 -92.70 -0.77 12.13 16 29 H 0.40 17.27 5.95 -92.71 -0.55 16.72 16 30 H 0.19 5.49 6.41 -2.91 -0.02 5.47 16 31 H 0.17 5.30 7.64 -2.91 -0.02 5.27 16 Total: -1.00 -63.12 298.15 2.70 -60.42 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -2.38 Total: 15.47 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 4.34 Total: 30.68 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -3.33 Total: -102.63 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.06 Total: -32.40 kcal Atomic # 9 Polarization: -14.12 SS G_CDS: 2.10 Total: -12.02 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.47 kcal Total: -63.12 2.70 -60.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.385 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds