Wall clock time and date at job start Tue Mar 31 2020 14:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48497 * 109.47343 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00504 * 3 2 1 6 6 H 1.48498 * 109.47410 * 150.00042 * 3 2 1 7 7 C 1.38653 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99821 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00371 * 179.97438 * 7 2 1 10 10 C 1.35752 * 117.00386 * 174.93553 * 9 7 2 11 11 C 1.38937 * 120.04054 * 185.61947 * 10 9 7 12 12 C 1.38111 * 120.04158 * 179.97438 * 11 10 9 13 13 C 1.38226 * 120.12706 * 359.78450 * 12 11 10 14 14 C 1.38802 * 120.07767 * 0.47101 * 13 12 11 15 15 O 1.35910 * 120.02042 * 179.79120 * 14 13 12 16 16 C 1.34699 * 116.99512 * 255.00480 * 15 14 13 17 17 O 1.21456 * 120.00547 * 355.02112 * 16 15 14 18 18 C 1.47923 * 119.99906 * 175.00985 * 16 15 14 19 19 C 1.39606 * 120.00162 * 180.02562 * 18 16 15 20 20 C 1.37805 * 119.99717 * 179.72696 * 19 18 16 21 21 C 1.39604 * 120.00219 * 0.23420 * 20 19 18 22 22 C 1.47927 * 119.99987 * 180.02562 * 21 20 19 23 23 O 1.21444 * 120.00063 * 359.97438 * 22 21 20 24 24 O 1.34688 * 120.00148 * 179.97438 * 22 21 20 25 25 C 1.39601 * 119.99979 * 359.97438 * 21 20 19 26 26 C 1.37806 * 120.00195 * 0.02562 * 25 21 20 27 27 C 1.38623 * 119.95476 * 359.50714 * 14 13 12 28 28 H 0.97003 * 119.99206 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.97706 * 359.97264 * 11 10 9 30 30 H 1.08003 * 119.93389 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.96343 * 180.24945 * 13 12 11 32 32 H 1.07998 * 119.99935 * 359.97438 * 19 18 16 33 33 H 1.07998 * 119.99971 * 180.24978 * 20 19 18 34 34 H 0.96703 * 117.00222 * 179.97438 * 24 22 21 35 35 H 1.07998 * 120.00066 * 180.02562 * 25 21 20 36 36 H 1.07997 * 120.00047 * 180.02562 * 26 25 21 37 37 H 1.08006 * 120.06291 * 180.23629 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2009 -0.0011 10 6 3.9735 -2.4057 0.1052 11 6 5.3558 -2.4714 0.2287 12 6 5.9828 -3.6972 0.3373 13 6 5.2373 -4.8611 0.3280 14 6 3.8565 -4.8017 0.1996 15 8 3.1249 -5.9471 0.1863 16 6 2.6406 -6.3494 -1.0045 17 8 2.7872 -5.6509 -1.9872 18 6 1.9303 -7.6422 -1.1153 19 6 1.4288 -8.0596 -2.3496 20 6 0.7720 -9.2665 -2.4539 21 6 0.6039 -10.0697 -1.3244 22 6 -0.1006 -11.3656 -1.4366 23 8 -0.5332 -11.7306 -2.5111 24 8 -0.2624 -12.1407 -0.3470 25 6 1.1016 -9.6503 -0.0894 26 6 1.7584 -8.4434 0.0150 27 6 3.2236 -3.5732 0.0908 28 1 -0.4849 0.8401 0.0004 29 1 5.9404 -1.5633 0.2397 30 1 7.0574 -3.7462 0.4337 31 1 5.7300 -5.8180 0.4172 32 1 1.5591 -7.4383 -3.2233 33 1 0.3876 -9.5913 -3.4094 34 1 -0.7295 -12.9785 -0.4697 35 1 0.9719 -10.2718 0.7843 36 1 2.1438 -8.1192 0.9704 37 1 2.1490 -3.5248 -0.0054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:20 Heat of formation + Delta-G solvation = -130.855373 kcal Electronic energy + Delta-G solvation = -25775.547625 eV Core-core repulsion = 21642.654077 eV Total energy + Delta-G solvation = -4132.893548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20878 -40.70875 -39.28771 -38.66495 -37.10827 -36.53610 -35.90884 -32.46594 -32.22255 -31.53094 -29.85031 -29.23030 -26.28424 -25.36404 -23.74869 -22.75635 -21.97902 -21.56485 -20.66017 -18.70820 -18.32029 -18.18701 -18.00658 -17.43485 -16.35966 -16.11917 -16.01050 -15.36790 -15.25449 -15.12474 -14.55597 -14.41159 -14.00359 -13.96154 -13.86287 -13.72653 -13.24327 -13.10991 -12.69131 -12.58409 -12.30129 -12.00874 -11.76074 -11.59311 -11.44084 -11.17418 -11.12738 -10.87136 -10.61634 -10.48464 -10.28584 -9.58727 -9.58068 -9.48878 -8.95068 -8.32841 -7.56569 -6.48258 -4.16152 -0.14437 0.90078 1.56978 1.78747 2.04388 2.49979 2.55630 2.84503 3.18967 3.22041 3.35491 3.40612 4.17893 4.26959 4.31359 4.44737 4.48245 4.68676 4.79622 4.83264 4.94689 5.02967 5.26333 5.43863 5.56336 5.61915 5.68806 5.77301 5.81880 5.88124 5.99675 6.01652 6.16904 6.26500 6.32429 6.70575 6.87668 6.93747 6.99857 7.34665 7.41375 7.66750 7.89520 7.98559 8.85567 9.43614 10.58976 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002579 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.618966 B =10855.177479 C =11903.651622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.106 0.894 9 O -0.209 6.209 10 C 0.169 3.831 11 C -0.184 4.184 12 C -0.066 4.066 13 C -0.202 4.202 14 C 0.117 3.883 15 O -0.288 6.288 16 C 0.496 3.504 17 O -0.470 6.470 18 C -0.076 4.076 19 C -0.067 4.067 20 C -0.065 4.065 21 C -0.102 4.102 22 C 0.528 3.472 23 O -0.509 6.509 24 O -0.510 6.510 25 C -0.073 4.073 26 C -0.076 4.076 27 C -0.217 4.217 28 H 0.281 0.719 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.417 0.583 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -20.793 0.810 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.123 0.877 9 O -0.113 6.113 10 C 0.116 3.884 11 C -0.203 4.203 12 C -0.085 4.085 13 C -0.221 4.221 14 C 0.077 3.923 15 O -0.203 6.203 16 C 0.339 3.661 17 O -0.355 6.355 18 C -0.078 4.078 19 C -0.085 4.085 20 C -0.083 4.083 21 C -0.103 4.103 22 C 0.372 3.628 23 O -0.398 6.398 24 O -0.322 6.322 25 C -0.091 4.091 26 C -0.095 4.095 27 C -0.236 4.236 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.276 0.724 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.755 -19.896 0.250 20.249 hybrid contribution -0.312 0.171 -0.106 0.371 sum 3.443 -19.725 0.144 20.024 Atomic orbital electron populations 1.69651 1.05616 1.28673 1.47217 1.24482 0.95055 0.98920 0.95400 0.86157 0.80318 0.81223 0.79084 1.19748 1.20674 1.18237 1.20762 0.76676 0.96724 1.52599 0.87711 1.83589 1.22815 1.25164 1.79745 1.18846 0.91538 0.85042 0.92931 1.20350 0.91876 0.98305 1.09809 1.20493 0.98799 0.91004 0.98184 1.20571 0.91276 0.98817 1.11464 1.18197 0.89378 0.82758 1.01986 1.84525 1.62774 1.40189 1.32799 1.21433 0.77239 0.85838 0.81552 1.90916 1.53296 1.53915 1.37381 1.19446 1.00349 0.92593 0.95374 1.21301 0.94504 0.95473 0.97207 1.21220 0.96059 0.92544 0.98440 1.19284 1.02479 0.92906 0.95643 1.20896 0.76432 0.84302 0.81214 1.90906 1.46973 1.72895 1.28997 1.84546 1.73197 1.35540 1.38879 1.21467 0.94853 0.95805 0.96994 1.21572 0.96087 0.92961 0.98832 1.21335 1.01776 0.91031 1.09479 0.90885 0.85794 0.85710 0.86427 0.83081 0.83358 0.72427 0.83386 0.83084 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.21 13.96 55.48 0.77 -24.44 16 2 C 0.07 1.83 5.49 -17.51 -0.10 1.74 16 3 Si 0.91 21.45 28.62 -169.99 -4.86 16.58 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.39 -11.10 9.95 30.89 0.31 -10.79 16 8 H 0.11 3.08 5.44 -52.48 -0.29 2.79 16 9 O -0.21 -5.48 8.58 0.04 0.00 -5.48 16 10 C 0.17 3.92 6.65 -39.13 -0.26 3.66 16 11 C -0.18 -3.53 9.99 -39.37 -0.39 -3.92 16 12 C -0.07 -1.08 10.03 -39.63 -0.40 -1.48 16 13 C -0.20 -3.42 9.99 -39.38 -0.39 -3.81 16 14 C 0.12 2.27 5.19 -39.23 -0.20 2.07 16 15 O -0.29 -4.91 9.26 -24.71 -0.23 -5.14 16 16 C 0.50 8.14 7.76 34.70 0.27 8.41 16 17 O -0.47 -9.28 15.80 -19.23 -0.30 -9.58 16 18 C -0.08 -0.94 5.88 -104.91 -0.62 -1.56 16 19 C -0.07 -0.73 9.58 -39.23 -0.38 -1.11 16 20 C -0.06 -0.62 9.58 -39.23 -0.38 -0.99 16 21 C -0.10 -0.94 5.88 -104.91 -0.62 -1.55 16 22 C 0.53 4.71 8.28 34.70 0.29 5.00 16 23 O -0.51 -5.92 17.12 -19.22 -0.33 -6.25 16 24 O -0.51 -2.98 12.67 -40.46 -0.51 -3.50 16 25 C -0.07 -0.60 9.60 -39.23 -0.38 -0.98 16 26 C -0.08 -0.75 9.60 -39.23 -0.38 -1.12 16 27 C -0.22 -4.87 8.59 -39.25 -0.34 -5.21 16 28 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 30 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.15 1.62 7.64 -52.49 -0.40 1.22 16 33 H 0.15 1.25 7.64 -52.49 -0.40 0.85 16 34 H 0.42 0.61 9.11 45.56 0.42 1.03 16 35 H 0.15 0.89 7.60 -52.49 -0.40 0.49 16 36 H 0.15 1.30 7.60 -52.49 -0.40 0.90 16 37 H 0.14 3.37 5.64 -52.48 -0.30 3.07 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -33.92 342.50 -6.43 -40.34 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.17 Total: 3.95 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.96 Total: -11.65 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.77 Total: -24.44 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.37 Total: -29.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.92 -6.43 -40.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.511 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds