Wall clock time and date at job start Tue Mar 31 2020 14:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48497 * 109.47343 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00504 * 3 2 1 6 6 H 1.48498 * 109.47410 * 150.00042 * 3 2 1 7 7 C 1.38653 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99821 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00371 * 179.97438 * 7 2 1 10 10 C 1.35752 * 117.00386 * 174.93553 * 9 7 2 11 11 C 1.38937 * 120.04054 * 185.61947 * 10 9 7 12 12 C 1.38111 * 120.04158 * 179.97438 * 11 10 9 13 13 C 1.38226 * 120.12706 * 359.78450 * 12 11 10 14 14 C 1.38802 * 120.07767 * 0.47101 * 13 12 11 15 15 O 1.35910 * 120.02042 * 179.79120 * 14 13 12 16 16 C 1.34699 * 116.99512 * 255.00480 * 15 14 13 17 17 O 1.21456 * 120.00547 * 355.02112 * 16 15 14 18 18 C 1.47923 * 119.99906 * 175.00985 * 16 15 14 19 19 C 1.39606 * 120.00162 * 180.02562 * 18 16 15 20 20 C 1.37805 * 119.99717 * 179.72696 * 19 18 16 21 21 C 1.39604 * 120.00219 * 0.23420 * 20 19 18 22 22 C 1.47927 * 119.99987 * 180.02562 * 21 20 19 23 23 O 1.21444 * 120.00063 * 359.97438 * 22 21 20 24 24 O 1.34688 * 120.00148 * 179.97438 * 22 21 20 25 25 C 1.39601 * 119.99979 * 359.97438 * 21 20 19 26 26 C 1.37806 * 120.00195 * 0.02562 * 25 21 20 27 27 C 1.38623 * 119.95476 * 359.50714 * 14 13 12 28 28 H 0.97003 * 119.99206 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.97706 * 359.97264 * 11 10 9 30 30 H 1.08003 * 119.93389 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.96343 * 180.24945 * 13 12 11 32 32 H 1.07998 * 119.99935 * 359.97438 * 19 18 16 33 33 H 1.07998 * 119.99971 * 180.24978 * 20 19 18 34 34 H 0.96703 * 117.00222 * 179.97438 * 24 22 21 35 35 H 1.07998 * 120.00066 * 180.02562 * 25 21 20 36 36 H 1.07997 * 120.00047 * 180.02562 * 26 25 21 37 37 H 1.08006 * 120.06291 * 180.23629 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2009 -0.0011 10 6 3.9735 -2.4057 0.1052 11 6 5.3558 -2.4714 0.2287 12 6 5.9828 -3.6972 0.3373 13 6 5.2373 -4.8611 0.3280 14 6 3.8565 -4.8017 0.1996 15 8 3.1249 -5.9471 0.1863 16 6 2.6406 -6.3494 -1.0045 17 8 2.7872 -5.6509 -1.9872 18 6 1.9303 -7.6422 -1.1153 19 6 1.4288 -8.0596 -2.3496 20 6 0.7720 -9.2665 -2.4539 21 6 0.6039 -10.0697 -1.3244 22 6 -0.1006 -11.3656 -1.4366 23 8 -0.5332 -11.7306 -2.5111 24 8 -0.2624 -12.1407 -0.3470 25 6 1.1016 -9.6503 -0.0894 26 6 1.7584 -8.4434 0.0150 27 6 3.2236 -3.5732 0.0908 28 1 -0.4849 0.8401 0.0004 29 1 5.9404 -1.5633 0.2397 30 1 7.0574 -3.7462 0.4337 31 1 5.7300 -5.8180 0.4172 32 1 1.5591 -7.4383 -3.2233 33 1 0.3876 -9.5913 -3.4094 34 1 -0.7295 -12.9785 -0.4697 35 1 0.9719 -10.2718 0.7843 36 1 2.1438 -8.1192 0.9704 37 1 2.1490 -3.5248 -0.0054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:19 Heat of formation + Delta-G solvation = -152.243024 kcal Electronic energy + Delta-G solvation = -25776.475063 eV Core-core repulsion = 21642.654077 eV Total energy + Delta-G solvation = -4133.820986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51683 -41.51105 -40.76988 -39.75340 -38.58048 -37.45667 -37.16758 -34.51694 -33.15785 -32.32995 -31.37386 -30.83885 -27.55116 -27.07397 -24.84802 -23.70177 -23.30692 -22.87268 -21.87912 -20.06266 -19.84767 -19.38155 -19.06874 -18.39551 -17.90352 -17.51216 -16.99678 -16.74592 -16.28813 -16.12891 -15.99451 -15.82456 -15.68181 -15.35851 -14.90093 -14.69751 -14.55653 -14.49455 -14.19652 -13.85302 -13.60976 -13.27048 -13.09120 -12.83274 -12.63636 -12.57377 -12.34150 -12.17062 -12.03197 -11.98675 -11.80470 -11.55412 -10.97102 -10.46196 -10.25700 -9.86430 -9.26596 -8.55887 -6.31257 -1.02832 0.05503 0.12996 0.48459 0.83120 1.29690 1.34839 1.49845 1.52393 1.58183 1.90162 2.24628 2.55571 2.66228 2.90957 3.03845 3.33478 3.55813 3.73263 3.92084 3.97852 4.00593 4.14533 4.20074 4.25906 4.45701 4.51435 4.65539 4.80291 4.83078 4.93319 5.04996 5.09207 5.21735 5.29969 5.36260 5.43656 5.48066 5.50186 5.63288 5.76456 6.03379 6.55415 6.76590 6.88758 7.45072 8.55973 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002579 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.618966 B =10855.177479 C =11903.651622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.405 4.405 8 H 0.070 0.930 9 O -0.234 6.234 10 C 0.132 3.868 11 C -0.179 4.179 12 C -0.049 4.049 13 C -0.178 4.178 14 C 0.105 3.895 15 O -0.283 6.283 16 C 0.496 3.504 17 O -0.515 6.515 18 C -0.098 4.098 19 C -0.071 4.071 20 C -0.064 4.064 21 C -0.101 4.101 22 C 0.537 3.463 23 O -0.539 6.539 24 O -0.497 6.497 25 C -0.057 4.057 26 C -0.069 4.069 27 C -0.242 4.242 28 H 0.287 0.713 29 H 0.147 0.853 30 H 0.183 0.817 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.438 0.562 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.566 -23.012 2.069 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.481 4.481 8 H 0.088 0.912 9 O -0.141 6.141 10 C 0.082 3.918 11 C -0.198 4.198 12 C -0.066 4.066 13 C -0.197 4.197 14 C 0.064 3.936 15 O -0.198 6.198 16 C 0.343 3.657 17 O -0.403 6.403 18 C -0.099 4.099 19 C -0.090 4.090 20 C -0.082 4.082 21 C -0.102 4.102 22 C 0.381 3.619 23 O -0.431 6.431 24 O -0.312 6.312 25 C -0.075 4.075 26 C -0.087 4.087 27 C -0.262 4.262 28 H 0.096 0.904 29 H 0.164 0.836 30 H 0.200 0.800 31 H 0.179 0.821 32 H 0.162 0.838 33 H 0.175 0.825 34 H 0.301 0.699 35 H 0.197 0.803 36 H 0.182 0.818 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.571 -22.190 1.542 23.194 hybrid contribution -1.053 0.422 -0.440 1.217 sum 5.519 -21.769 1.102 22.484 Atomic orbital electron populations 1.69743 1.07136 1.29882 1.49423 1.25381 0.95957 1.02474 0.95009 0.85133 0.78964 0.76678 0.79421 1.19061 1.18947 1.17947 1.20620 0.78065 0.95928 1.53512 0.91213 1.83524 1.21159 1.26723 1.82691 1.19483 0.93372 0.84325 0.94630 1.20815 0.89961 1.00840 1.08174 1.21167 1.01436 0.89094 0.94925 1.21198 0.89839 1.01251 1.07379 1.18441 0.90852 0.82311 1.01947 1.84531 1.62820 1.39039 1.33374 1.22203 0.76337 0.86636 0.80552 1.90890 1.55253 1.55549 1.38579 1.19353 1.02117 0.91390 0.97053 1.21278 0.94932 0.96067 0.96678 1.21283 0.95638 0.91918 0.99335 1.19482 1.01848 0.93089 0.95788 1.20723 0.75698 0.84180 0.81256 1.90909 1.48314 1.73571 1.30310 1.84493 1.73004 1.36480 1.37176 1.21730 0.93106 0.95079 0.97567 1.21732 0.95663 0.92963 0.98310 1.21260 1.00237 0.93006 1.11689 0.90352 0.83563 0.79971 0.82141 0.83836 0.82486 0.69947 0.80257 0.81753 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.96 21.61 0.30 -55.92 16 2 C 0.01 0.62 5.49 84.83 0.47 1.09 16 3 Si 0.98 45.55 28.62 68.60 1.96 47.51 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.41 -24.69 9.95 67.92 0.68 -24.02 16 8 H 0.07 4.59 5.44 -2.91 -0.02 4.57 16 9 O -0.23 -12.89 8.58 -22.77 -0.20 -13.09 16 10 C 0.13 6.29 6.65 22.56 0.15 6.44 16 11 C -0.18 -6.50 9.99 22.41 0.22 -6.28 16 12 C -0.05 -1.36 10.03 22.24 0.22 -1.13 16 13 C -0.18 -5.38 9.99 22.40 0.22 -5.15 16 14 C 0.11 4.08 5.19 22.50 0.12 4.20 16 15 O -0.28 -9.72 9.26 0.36 0.00 -9.72 16 16 C 0.50 16.89 7.76 70.39 0.55 17.43 16 17 O -0.51 -21.58 15.80 19.98 0.32 -21.26 16 18 C -0.10 -2.43 5.88 -20.05 -0.12 -2.55 16 19 C -0.07 -1.60 9.58 22.50 0.22 -1.39 16 20 C -0.06 -1.18 9.58 22.50 0.22 -0.96 16 21 C -0.10 -1.64 5.88 -20.05 -0.12 -1.76 16 22 C 0.54 8.30 8.28 70.39 0.58 8.88 16 23 O -0.54 -11.72 17.12 20.02 0.34 -11.38 16 24 O -0.50 -4.10 12.67 -55.97 -0.71 -4.81 16 25 C -0.06 -0.78 9.60 22.50 0.22 -0.56 16 26 C -0.07 -1.22 9.60 22.50 0.22 -1.01 16 27 C -0.24 -11.57 8.59 22.49 0.19 -11.38 16 28 H 0.29 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.14 3.35 7.64 -2.91 -0.02 3.33 16 33 H 0.16 2.59 7.64 -2.91 -0.02 2.57 16 34 H 0.44 -0.21 9.11 -74.06 -0.67 -0.88 16 35 H 0.18 1.35 7.60 -2.91 -0.02 1.33 16 36 H 0.16 2.46 7.60 -2.91 -0.02 2.44 16 37 H 0.10 5.48 5.64 -2.91 -0.02 5.46 16 Total: -1.00 -81.08 342.50 6.53 -74.54 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.48 Total: 12.28 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 4.03 Total: -18.15 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.30 Total: -55.92 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -0.24 Total: -60.26 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.96 Total: 47.51 kcal Total: -81.08 6.53 -74.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.702 kcal (2) G-P(sol) polarization free energy of solvation -81.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds