Wall clock time and date at job start Tue Mar 31 2020 15:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.47023 * 125.65203 * 359.69273 * 14 12 11 16 16 C 1.54337 * 107.26730 * 178.85457 * 15 14 12 17 17 C 1.55162 * 103.01799 * 338.13983 * 16 15 14 18 18 F 1.39907 * 111.00154 * 277.23250 * 17 16 15 19 19 C 1.50697 * 111.00256 * 153.38422 * 17 16 15 20 20 O 1.20827 * 119.99903 * 1.34779 * 19 17 16 21 21 O 1.34231 * 120.00084 * 181.34627 * 19 17 16 22 22 C 1.47424 * 125.64665 * 180.02562 * 14 12 11 23 23 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 24 24 F 1.39903 * 109.47440 * 60.00123 * 23 9 7 25 25 F 1.39899 * 109.47255 * 180.02562 * 23 9 7 26 26 F 1.39900 * 109.47102 * 299.99874 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 29 29 H 1.09001 * 109.87966 * 298.39763 * 15 14 12 30 30 H 1.08995 * 109.88411 * 59.55924 * 15 14 12 31 31 H 1.09004 * 110.84656 * 219.67642 * 16 15 14 32 32 H 1.08994 * 110.51613 * 96.45434 * 16 15 14 33 33 H 0.96697 * 117.00038 * 180.02562 * 21 19 17 34 34 H 1.09005 * 110.36659 * 322.92067 * 22 14 12 35 35 H 1.09003 * 110.37315 * 85.14165 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 4.0942 -5.7830 0.0063 16 6 4.7003 -7.1914 -0.1697 17 6 3.4477 -8.1040 -0.2446 18 9 2.9766 -8.4150 1.0356 19 6 3.7384 -9.3569 -1.0299 20 8 4.8441 -9.5454 -1.4792 21 8 2.7691 -10.2636 -1.2301 22 6 2.4457 -7.1953 -0.9999 23 6 0.3719 -2.5805 1.2490 24 9 -0.5373 -1.5171 1.2496 25 9 -0.3272 -3.7922 1.2493 26 9 1.1766 -2.5067 2.3910 27 1 -0.4850 0.8401 0.0004 28 1 3.0969 -3.4866 0.3545 29 1 4.6680 -5.0559 -0.5683 30 1 4.0965 -5.5096 1.0615 31 1 5.3201 -7.4568 0.6867 32 1 5.2741 -7.2474 -1.0946 33 1 3.0033 -11.0515 -1.7395 34 1 1.4211 -7.4903 -0.7734 35 1 2.6244 -7.2416 -2.0742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:55 Heat of formation + Delta-G solvation = -287.258675 kcal Electronic energy + Delta-G solvation = -29573.930665 eV Core-core repulsion = 24493.921747 eV Total energy + Delta-G solvation = -5080.008918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.32617 -48.27004 -45.97648 -45.59709 -40.79404 -39.70647 -37.27231 -36.56620 -34.68928 -32.70511 -31.53121 -29.69949 -28.23219 -25.00824 -24.50187 -23.39898 -21.45449 -20.88634 -19.69820 -18.78779 -18.51749 -17.82638 -17.00464 -16.86163 -16.63016 -16.54667 -15.77794 -15.63974 -15.39244 -15.13285 -14.99083 -14.75149 -14.50122 -13.74894 -13.37419 -13.13715 -13.01515 -12.90657 -12.72797 -12.50332 -12.37457 -12.28715 -12.13009 -12.08459 -11.96583 -11.83015 -11.75673 -11.42034 -11.17923 -10.95873 -10.89473 -10.81526 -10.41633 -9.70469 -9.65786 -8.76257 -8.66461 -8.21877 -6.25162 -4.49382 1.47052 2.15155 2.85738 3.17863 3.24301 3.26712 3.48044 3.62307 3.76450 4.14915 4.20119 4.42259 4.55230 4.62525 4.70608 4.88290 4.92278 5.33445 5.38503 5.44315 5.52134 5.67001 5.82603 5.88437 5.89796 6.09659 6.24783 6.79730 7.13661 7.26965 7.30222 7.55033 7.61783 8.43686 8.51752 9.04006 9.19620 10.66445 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.003516 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.862069 B = 7962.574999 C = 8475.610096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.087 0.913 11 N -0.720 5.720 12 C 0.721 3.279 13 O -0.574 6.574 14 N -0.641 5.641 15 C 0.098 3.902 16 C -0.133 4.133 17 C 0.116 3.884 18 F -0.167 7.167 19 C 0.483 3.517 20 O -0.490 6.490 21 O -0.499 6.499 22 C 0.120 3.880 23 C 0.416 3.584 24 F -0.137 7.137 25 F -0.216 7.216 26 F -0.210 7.210 27 H 0.269 0.731 28 H 0.395 0.605 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.977 -14.396 -1.201 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.104 0.896 11 N -0.372 5.372 12 C 0.423 3.577 13 O -0.451 6.451 14 N -0.382 5.382 15 C -0.026 4.026 16 C -0.171 4.171 17 C 0.095 3.905 18 F -0.147 7.147 19 C 0.322 3.678 20 O -0.377 6.377 21 O -0.311 6.311 22 C -0.005 4.005 23 C 0.359 3.641 24 F -0.118 7.118 25 F -0.198 7.198 26 F -0.192 7.192 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.276 0.724 34 H 0.123 0.877 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.027 -13.971 -1.380 16.172 hybrid contribution 0.827 0.217 0.350 0.923 sum 8.854 -13.754 -1.031 16.390 Atomic orbital electron populations 1.70405 1.05855 1.27412 1.43503 1.25078 0.95157 1.00088 0.94036 0.86200 0.79512 0.81608 0.78431 1.20212 1.19500 1.20790 1.20855 0.93769 0.88000 1.56312 0.90471 1.19664 0.88227 0.84796 0.91751 0.89587 1.45264 1.17567 1.09309 1.65079 1.15495 0.83144 0.79771 0.79253 1.90943 1.18946 1.82307 1.52866 1.47416 1.13077 1.10132 1.67606 1.22065 0.82959 0.96744 1.00802 1.23221 0.94949 0.92360 1.06540 1.21770 0.98488 0.90121 0.80094 1.93000 1.89657 1.93685 1.38394 1.23125 0.82362 0.84184 0.78131 1.90768 1.23632 1.76059 1.47218 1.84590 1.43058 1.33374 1.70042 1.22368 0.99722 0.80717 0.97703 1.23158 0.80918 0.72847 0.87167 1.93404 1.68395 1.53805 1.96203 1.93077 1.81465 1.48304 1.96964 1.92985 1.74408 1.96192 1.55585 0.92073 0.77076 0.89945 0.90448 0.87655 0.87137 0.72359 0.87655 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.76 9.50 55.43 0.53 -22.23 16 2 C 0.07 1.68 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.77 29.54 -169.99 -5.02 14.75 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.55 -13.84 8.46 -34.44 -0.29 -14.13 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.41 16 9 C 0.26 6.46 2.21 -69.09 -0.15 6.31 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.72 -14.69 4.94 -59.82 -0.30 -14.98 16 12 C 0.72 14.48 8.02 -86.92 -0.70 13.79 16 13 O -0.57 -13.77 15.17 5.29 0.08 -13.69 16 14 N -0.64 -9.62 3.33 -176.22 -0.59 -10.20 16 15 C 0.10 1.05 6.15 -3.06 -0.02 1.03 16 16 C -0.13 -1.17 5.88 -24.89 -0.15 -1.31 16 17 C 0.12 1.23 1.59 -89.61 -0.14 1.09 16 18 F -0.17 -2.09 17.01 2.25 0.04 -2.06 16 19 C 0.48 4.63 7.42 36.00 0.27 4.90 16 20 O -0.49 -5.43 16.49 -18.75 -0.31 -5.74 16 21 O -0.50 -3.74 13.42 -39.26 -0.53 -4.27 16 22 C 0.12 1.50 6.17 -2.52 -0.02 1.49 16 23 C 0.42 10.69 2.81 37.16 0.10 10.79 16 24 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16 25 F -0.22 -5.58 15.67 2.25 0.04 -5.55 16 26 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.40 6.92 7.53 -40.82 -0.31 6.62 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.88 7.41 -51.93 -0.38 0.49 16 33 H 0.42 1.05 9.10 45.56 0.41 1.46 16 34 H 0.11 1.46 8.04 -51.93 -0.42 1.05 16 35 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -33.16 318.32 -4.69 -37.85 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -2.31 Total: 4.69 kcal Atomic # 6 Polarization: 26.71 SS G_CDS: -1.19 Total: 25.53 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.35 Total: -47.42 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.76 Total: -23.70 kcal Atomic # 9 Polarization: -16.64 SS G_CDS: 0.14 Total: -16.50 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.16 -4.69 -37.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.409 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds