Wall clock time and date at job start Tue Mar 31 2020 15:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.47023 * 125.65203 * 359.69273 * 14 12 11 16 16 C 1.54337 * 107.26730 * 178.85457 * 15 14 12 17 17 C 1.55162 * 103.01799 * 338.13983 * 16 15 14 18 18 F 1.39907 * 111.00154 * 277.23250 * 17 16 15 19 19 C 1.50697 * 111.00256 * 153.38422 * 17 16 15 20 20 O 1.20827 * 119.99903 * 1.34779 * 19 17 16 21 21 O 1.34231 * 120.00084 * 181.34627 * 19 17 16 22 22 C 1.47424 * 125.64665 * 180.02562 * 14 12 11 23 23 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 24 24 F 1.39903 * 109.47440 * 60.00123 * 23 9 7 25 25 F 1.39899 * 109.47255 * 180.02562 * 23 9 7 26 26 F 1.39900 * 109.47102 * 299.99874 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 29 29 H 1.09001 * 109.87966 * 298.39763 * 15 14 12 30 30 H 1.08995 * 109.88411 * 59.55924 * 15 14 12 31 31 H 1.09004 * 110.84656 * 219.67642 * 16 15 14 32 32 H 1.08994 * 110.51613 * 96.45434 * 16 15 14 33 33 H 0.96697 * 117.00038 * 180.02562 * 21 19 17 34 34 H 1.09005 * 110.36659 * 322.92067 * 22 14 12 35 35 H 1.09003 * 110.37315 * 85.14165 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 4.0942 -5.7830 0.0063 16 6 4.7003 -7.1914 -0.1697 17 6 3.4477 -8.1040 -0.2446 18 9 2.9766 -8.4150 1.0356 19 6 3.7384 -9.3569 -1.0299 20 8 4.8441 -9.5454 -1.4792 21 8 2.7691 -10.2636 -1.2301 22 6 2.4457 -7.1953 -0.9999 23 6 0.3719 -2.5805 1.2490 24 9 -0.5373 -1.5171 1.2496 25 9 -0.3272 -3.7922 1.2493 26 9 1.1766 -2.5067 2.3910 27 1 -0.4850 0.8401 0.0004 28 1 3.0969 -3.4866 0.3545 29 1 4.6680 -5.0559 -0.5683 30 1 4.0965 -5.5096 1.0615 31 1 5.3201 -7.4568 0.6867 32 1 5.2741 -7.2474 -1.0946 33 1 3.0033 -11.0515 -1.7395 34 1 1.4211 -7.4903 -0.7734 35 1 2.6244 -7.2416 -2.0742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:55 Heat of formation + Delta-G solvation = -311.295948 kcal Electronic energy + Delta-G solvation = -29574.972999 eV Core-core repulsion = 24493.921747 eV Total energy + Delta-G solvation = -5081.051252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.39889 -49.18525 -48.03312 -47.71090 -41.62847 -41.03190 -38.42808 -37.32986 -36.49332 -34.51823 -32.74247 -30.66762 -29.92335 -26.61745 -25.98962 -24.34335 -23.26707 -21.71855 -21.25692 -19.89052 -19.54292 -18.88201 -18.80271 -18.62045 -18.60815 -17.90552 -17.20313 -16.98333 -16.64414 -16.49287 -16.25829 -15.91772 -15.42990 -15.11994 -14.98313 -14.83324 -14.52938 -14.44044 -14.33188 -14.25386 -13.99405 -13.95001 -13.83775 -13.80415 -13.02860 -12.94406 -12.78087 -12.73577 -12.64569 -12.54606 -12.29108 -12.18763 -11.77467 -11.55812 -11.34329 -10.67885 -10.23368 -9.66881 -8.19520 -6.50555 0.70610 1.24884 1.49596 1.50191 1.61518 1.74815 2.02686 2.37982 2.55512 2.63629 2.90475 2.96093 3.03712 3.38113 3.78862 3.79830 3.88196 3.96098 4.07277 4.17892 4.41344 4.49580 4.61989 4.70751 4.86080 4.91685 5.11322 5.31150 5.39925 5.53475 5.66053 5.95047 6.54387 6.72436 6.95263 7.19609 7.52036 8.73374 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.003516 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.862069 B = 7962.574999 C = 8475.610096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.275 1.275 5 H -0.255 1.255 6 H -0.284 1.284 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.270 3.730 10 H 0.049 0.951 11 N -0.713 5.713 12 C 0.717 3.283 13 O -0.622 6.622 14 N -0.638 5.638 15 C 0.089 3.911 16 C -0.120 4.120 17 C 0.116 3.884 18 F -0.180 7.180 19 C 0.494 3.506 20 O -0.504 6.504 21 O -0.499 6.499 22 C 0.113 3.887 23 C 0.412 3.588 24 F -0.150 7.150 25 F -0.220 7.220 26 F -0.203 7.203 27 H 0.269 0.731 28 H 0.410 0.590 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.439 0.561 34 H 0.085 0.915 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.608 -14.840 -1.210 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.179 1.179 6 H -0.209 1.209 7 C -0.596 4.596 8 H 0.112 0.888 9 C 0.162 3.838 10 H 0.066 0.934 11 N -0.367 5.367 12 C 0.419 3.581 13 O -0.502 6.502 14 N -0.377 5.377 15 C -0.033 4.033 16 C -0.158 4.158 17 C 0.095 3.905 18 F -0.160 7.160 19 C 0.333 3.667 20 O -0.391 6.391 21 O -0.314 6.314 22 C -0.011 4.011 23 C 0.355 3.645 24 F -0.132 7.132 25 F -0.202 7.202 26 F -0.185 7.185 27 H 0.078 0.922 28 H 0.247 0.753 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.302 0.698 34 H 0.104 0.896 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.729 -14.491 -1.387 18.083 hybrid contribution -0.028 0.223 0.348 0.415 sum 10.700 -14.267 -1.039 17.864 Atomic orbital electron populations 1.70538 1.07541 1.28185 1.44610 1.26003 0.95876 1.03676 0.93443 0.85138 0.78624 0.77028 0.78398 1.20028 1.17878 1.20943 1.21203 0.94588 0.88047 1.55790 0.88776 1.19247 0.88390 0.86448 0.89698 0.93358 1.44960 1.17520 1.08741 1.65495 1.15618 0.83214 0.80393 0.78902 1.90903 1.21332 1.83219 1.54771 1.47343 1.14077 1.09685 1.66593 1.22407 0.80689 0.98882 1.01322 1.23257 0.94121 0.90103 1.08294 1.21826 0.98501 0.90812 0.79359 1.92976 1.89915 1.93837 1.39300 1.22722 0.82267 0.84046 0.77625 1.90773 1.24131 1.76422 1.47804 1.84548 1.42464 1.34149 1.70211 1.22534 0.99570 0.79891 0.99099 1.23383 0.80904 0.72348 0.87859 1.93377 1.68976 1.54483 1.96318 1.93065 1.81641 1.48455 1.97018 1.92982 1.74105 1.96150 1.55265 0.92157 0.75295 0.87986 0.89932 0.85527 0.85671 0.69752 0.89607 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.17 9.50 21.45 0.20 -47.97 16 2 C 0.02 0.78 5.20 84.66 0.44 1.22 16 3 Si 0.98 39.78 29.54 68.60 2.03 41.81 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.56 -27.75 8.46 25.60 0.22 -27.53 16 8 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 9 C 0.27 13.53 2.21 44.24 0.10 13.63 16 10 H 0.05 2.80 7.58 -2.39 -0.02 2.78 16 11 N -0.71 -28.96 4.94 -461.42 -2.28 -31.24 16 12 C 0.72 28.95 8.02 179.05 1.44 30.39 16 13 O -0.62 -30.80 15.17 -3.98 -0.06 -30.86 16 14 N -0.64 -18.52 3.33 -829.69 -2.76 -21.28 16 15 C 0.09 1.69 6.15 86.73 0.53 2.22 16 16 C -0.12 -1.74 5.88 31.79 0.19 -1.55 16 17 C 0.12 2.23 1.59 -10.14 -0.02 2.21 16 18 F -0.18 -4.26 17.01 44.97 0.76 -3.49 16 19 C 0.49 8.35 7.42 71.23 0.53 8.88 16 20 O -0.50 -9.80 16.49 21.96 0.36 -9.44 16 21 O -0.50 -6.43 13.42 -51.42 -0.69 -7.13 16 22 C 0.11 2.74 6.17 86.86 0.54 3.28 16 23 C 0.41 21.52 2.81 71.98 0.20 21.73 16 24 F -0.15 -8.52 12.91 44.97 0.58 -7.94 16 25 F -0.22 -11.64 15.67 44.97 0.70 -10.93 16 26 F -0.20 -9.99 16.94 44.97 0.76 -9.23 16 27 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.41 13.81 7.53 -92.70 -0.70 13.12 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.13 1.52 7.41 -2.39 -0.02 1.50 16 33 H 0.44 1.13 9.10 -74.06 -0.67 0.46 16 34 H 0.09 2.43 8.04 -2.38 -0.02 2.41 16 35 H 0.11 2.16 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -72.39 318.32 3.60 -68.79 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.18 Total: 14.43 kcal Atomic # 6 Polarization: 50.32 SS G_CDS: 4.16 Total: 54.48 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -4.84 Total: -100.49 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.39 Total: -47.43 kcal Atomic # 9 Polarization: -34.40 SS G_CDS: 2.81 Total: -31.59 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -72.39 3.60 -68.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.504 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -314.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -311.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds