Wall clock time and date at job start Tue Mar 31 2020 15:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99657 * 2 1 4 4 H 1.48502 * 109.47096 * 240.00164 * 3 2 1 5 5 H 1.48496 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46831 * 120.00567 * 3 2 1 7 7 C 1.37878 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99957 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47208 * 300.00031 * 9 7 2 11 11 N 1.46496 * 109.47229 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00258 * 154.99980 * 11 9 7 13 13 O 1.21579 * 119.99978 * 359.97438 * 12 11 9 14 14 N 1.34784 * 119.99908 * 179.97438 * 12 11 9 15 15 C 1.47019 * 125.64840 * 359.68992 * 14 12 11 16 16 C 1.54329 * 107.26632 * 178.84700 * 15 14 12 17 17 C 1.55159 * 103.02245 * 338.14378 * 16 15 14 18 18 F 1.39897 * 111.00010 * 277.23201 * 17 16 15 19 19 C 1.50701 * 111.00681 * 153.37827 * 17 16 15 20 20 O 1.20823 * 120.00148 * 1.34949 * 19 17 16 21 21 O 1.34227 * 119.99893 * 181.35063 * 19 17 16 22 22 C 1.47426 * 125.64612 * 179.97438 * 14 12 11 23 23 C 1.52998 * 109.47384 * 59.99974 * 9 7 2 24 24 F 1.39900 * 109.47393 * 180.02562 * 23 9 7 25 25 F 1.39905 * 109.47118 * 299.99955 * 23 9 7 26 26 F 1.39895 * 109.47301 * 60.00041 * 23 9 7 27 27 H 0.96995 * 119.99856 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99694 * 334.99370 * 11 9 7 29 29 H 1.08995 * 109.88426 * 298.39753 * 15 14 12 30 30 H 1.09007 * 109.88165 * 59.55764 * 15 14 12 31 31 H 1.08997 * 110.85254 * 219.67372 * 16 15 14 32 32 H 1.09009 * 110.66844 * 96.51977 * 16 15 14 33 33 H 0.96696 * 117.00345 * 180.02562 * 21 19 17 34 34 H 1.09002 * 110.36613 * 322.93126 * 22 14 12 35 35 H 1.08996 * 110.36652 * 85.25548 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 2.2031 -3.6126 -0.0005 12 6 1.8371 -4.8122 0.4927 13 8 0.7169 -4.9702 0.9382 14 7 2.7128 -5.8368 0.4922 15 6 4.0903 -5.7863 -0.0191 16 6 4.7171 -7.1770 0.2153 17 6 3.8413 -7.7683 1.3513 18 9 4.2687 -7.3124 2.6029 19 6 3.8354 -9.2745 1.3006 20 8 4.4836 -9.8533 0.4612 21 8 3.1099 -9.9730 2.1880 22 6 2.4461 -7.1953 0.9989 23 6 0.3711 -2.5799 -1.2494 24 9 -0.3289 -3.7913 -1.2491 25 9 -0.5381 -1.5166 -1.2488 26 9 1.1748 -2.5056 -2.3920 27 1 -0.4850 0.8400 0.0004 28 1 3.0969 -3.4865 -0.3556 29 1 4.0821 -5.5560 -1.0844 30 1 4.6589 -5.0296 0.5215 31 1 5.7548 -7.0858 0.5360 32 1 4.6454 -7.7880 -0.6847 33 1 3.1379 -10.9369 2.1162 34 1 1.8180 -7.1518 1.8888 35 1 1.9710 -7.8014 0.2276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:58 Heat of formation + Delta-G solvation = -287.234897 kcal Electronic energy + Delta-G solvation = -29522.880918 eV Core-core repulsion = 24442.873031 eV Total energy + Delta-G solvation = -5080.007887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.34139 -48.28157 -45.99542 -45.60659 -40.79571 -39.70731 -37.27372 -36.56784 -34.68907 -32.70293 -31.53158 -29.70167 -28.23305 -25.00825 -24.50577 -23.40149 -21.45862 -20.88914 -19.70104 -18.78953 -18.51818 -17.83302 -17.01153 -16.87346 -16.63489 -16.51156 -15.89722 -15.54487 -15.43118 -15.15650 -14.95531 -14.74887 -14.48117 -13.79423 -13.35959 -13.14048 -13.02245 -12.89439 -12.76779 -12.49999 -12.39223 -12.28820 -12.13467 -12.08814 -11.95759 -11.81332 -11.78451 -11.43041 -11.18253 -10.95750 -10.87699 -10.82454 -10.41659 -9.71580 -9.66434 -8.75204 -8.66399 -8.21884 -6.24620 -4.48999 1.47053 2.15004 2.85572 3.19424 3.24518 3.26275 3.48010 3.62265 3.76340 4.15423 4.18941 4.42710 4.56424 4.59674 4.70748 4.88283 4.92403 5.33548 5.38893 5.44353 5.51535 5.66754 5.82229 5.87652 5.89818 6.09313 6.24003 6.79772 7.13753 7.26883 7.30291 7.55212 7.62174 8.43769 8.51881 9.04079 9.19953 10.66900 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022217 B = 0.003506 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.996976 B = 7985.356585 C = 8496.283808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.087 0.913 11 N -0.720 5.720 12 C 0.721 3.279 13 O -0.574 6.574 14 N -0.641 5.641 15 C 0.098 3.902 16 C -0.133 4.133 17 C 0.116 3.884 18 F -0.167 7.167 19 C 0.483 3.517 20 O -0.490 6.490 21 O -0.499 6.499 22 C 0.120 3.880 23 C 0.416 3.584 24 F -0.217 7.217 25 F -0.137 7.137 26 F -0.210 7.210 27 H 0.269 0.731 28 H 0.395 0.605 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.105 0.895 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 -14.444 0.994 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.104 0.896 11 N -0.372 5.372 12 C 0.423 3.577 13 O -0.451 6.451 14 N -0.382 5.382 15 C -0.026 4.026 16 C -0.171 4.171 17 C 0.096 3.904 18 F -0.148 7.148 19 C 0.322 3.678 20 O -0.377 6.377 21 O -0.311 6.311 22 C -0.005 4.005 23 C 0.359 3.641 24 F -0.199 7.199 25 F -0.118 7.118 26 F -0.192 7.192 27 H 0.080 0.920 28 H 0.229 0.771 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.276 0.724 34 H 0.124 0.876 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.934 -14.027 1.136 16.155 hybrid contribution 0.806 0.183 -0.433 0.933 sum 8.739 -13.844 0.703 16.387 Atomic orbital electron populations 1.70394 1.05850 1.27529 1.43436 1.25074 0.95158 1.00077 0.94025 0.86257 0.79323 0.81273 0.78899 1.19829 1.20865 1.19777 1.20815 0.93747 0.88010 1.56389 0.90514 1.19657 0.88228 0.84796 0.91745 0.89584 1.45262 1.17537 1.09272 1.65143 1.15494 0.83221 0.79693 0.79252 1.90942 1.18975 1.82359 1.52776 1.47417 1.13526 1.10212 1.67080 1.22058 0.82953 0.96921 1.00618 1.23218 1.00023 0.96216 0.97639 1.21763 0.99221 0.86480 0.82976 1.92994 1.90831 1.89319 1.41610 1.23123 0.75839 0.90486 0.78373 1.90768 1.39967 1.71013 1.35913 1.84586 1.65215 1.26553 1.54724 1.22362 0.92634 0.83656 1.01833 1.23171 0.80936 0.72830 0.87135 1.93073 1.81439 1.48393 1.96964 1.93406 1.68383 1.53798 1.96194 1.92983 1.74461 1.96188 1.55549 0.92016 0.77081 0.90064 0.90324 0.87649 0.87162 0.72351 0.87629 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.78 9.50 55.43 0.53 -22.26 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.55 -13.88 8.46 -34.44 -0.29 -14.17 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 9 C 0.26 6.46 2.21 -69.09 -0.15 6.31 16 10 H 0.09 2.39 7.58 -51.93 -0.39 1.99 16 11 N -0.72 -14.68 4.95 -59.82 -0.30 -14.98 16 12 C 0.72 14.48 8.02 -86.91 -0.70 13.79 16 13 O -0.57 -13.77 15.17 5.30 0.08 -13.69 16 14 N -0.64 -9.62 3.33 -176.25 -0.59 -10.20 16 15 C 0.10 1.05 6.15 -3.06 -0.02 1.03 16 16 C -0.13 -1.17 5.88 -24.89 -0.15 -1.32 16 17 C 0.12 1.22 1.59 -89.63 -0.14 1.08 16 18 F -0.17 -2.04 17.01 2.25 0.04 -2.00 16 19 C 0.48 4.62 7.42 36.01 0.27 4.89 16 20 O -0.49 -5.46 16.48 -18.75 -0.31 -5.77 16 21 O -0.50 -3.72 13.42 -39.25 -0.53 -4.24 16 22 C 0.12 1.51 6.17 -2.54 -0.02 1.49 16 23 C 0.42 10.62 2.81 37.16 0.10 10.72 16 24 F -0.22 -5.53 15.68 2.25 0.04 -5.49 16 25 F -0.14 -3.76 12.91 2.25 0.03 -3.74 16 26 F -0.21 -5.13 16.94 2.25 0.04 -5.09 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 28 H 0.40 6.92 7.52 -40.82 -0.31 6.61 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.89 7.40 -51.92 -0.38 0.51 16 33 H 0.42 1.04 9.10 45.56 0.41 1.46 16 34 H 0.11 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -33.04 318.31 -4.69 -37.73 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.31 Total: 4.71 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: -1.19 Total: 25.42 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.36 Total: -47.44 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.76 Total: -23.70 kcal Atomic # 9 Polarization: -16.45 SS G_CDS: 0.14 Total: -16.31 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.04 -4.69 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.504 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds