Wall clock time and date at job start Tue Mar 31 2020 15:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99657 * 2 1 4 4 H 1.48502 * 109.47096 * 240.00164 * 3 2 1 5 5 H 1.48496 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46831 * 120.00567 * 3 2 1 7 7 C 1.37878 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99957 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47208 * 300.00031 * 9 7 2 11 11 N 1.46496 * 109.47229 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00258 * 154.99980 * 11 9 7 13 13 O 1.21579 * 119.99978 * 359.97438 * 12 11 9 14 14 N 1.34784 * 119.99908 * 179.97438 * 12 11 9 15 15 C 1.47019 * 125.64840 * 359.68992 * 14 12 11 16 16 C 1.54329 * 107.26632 * 178.84700 * 15 14 12 17 17 C 1.55159 * 103.02245 * 338.14378 * 16 15 14 18 18 F 1.39897 * 111.00010 * 277.23201 * 17 16 15 19 19 C 1.50701 * 111.00681 * 153.37827 * 17 16 15 20 20 O 1.20823 * 120.00148 * 1.34949 * 19 17 16 21 21 O 1.34227 * 119.99893 * 181.35063 * 19 17 16 22 22 C 1.47426 * 125.64612 * 179.97438 * 14 12 11 23 23 C 1.52998 * 109.47384 * 59.99974 * 9 7 2 24 24 F 1.39900 * 109.47393 * 180.02562 * 23 9 7 25 25 F 1.39905 * 109.47118 * 299.99955 * 23 9 7 26 26 F 1.39895 * 109.47301 * 60.00041 * 23 9 7 27 27 H 0.96995 * 119.99856 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99694 * 334.99370 * 11 9 7 29 29 H 1.08995 * 109.88426 * 298.39753 * 15 14 12 30 30 H 1.09007 * 109.88165 * 59.55764 * 15 14 12 31 31 H 1.08997 * 110.85254 * 219.67372 * 16 15 14 32 32 H 1.09009 * 110.66844 * 96.51977 * 16 15 14 33 33 H 0.96696 * 117.00345 * 180.02562 * 21 19 17 34 34 H 1.09002 * 110.36613 * 322.93126 * 22 14 12 35 35 H 1.08996 * 110.36652 * 85.25548 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 2.2031 -3.6126 -0.0005 12 6 1.8371 -4.8122 0.4927 13 8 0.7169 -4.9702 0.9382 14 7 2.7128 -5.8368 0.4922 15 6 4.0903 -5.7863 -0.0191 16 6 4.7171 -7.1770 0.2153 17 6 3.8413 -7.7683 1.3513 18 9 4.2687 -7.3124 2.6029 19 6 3.8354 -9.2745 1.3006 20 8 4.4836 -9.8533 0.4612 21 8 3.1099 -9.9730 2.1880 22 6 2.4461 -7.1953 0.9989 23 6 0.3711 -2.5799 -1.2494 24 9 -0.3289 -3.7913 -1.2491 25 9 -0.5381 -1.5166 -1.2488 26 9 1.1748 -2.5056 -2.3920 27 1 -0.4850 0.8400 0.0004 28 1 3.0969 -3.4865 -0.3556 29 1 4.0821 -5.5560 -1.0844 30 1 4.6589 -5.0296 0.5215 31 1 5.7548 -7.0858 0.5360 32 1 4.6454 -7.7880 -0.6847 33 1 3.1379 -10.9369 2.1162 34 1 1.8180 -7.1518 1.8888 35 1 1.9710 -7.8014 0.2276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061723.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:57 Heat of formation + Delta-G solvation = -311.130868 kcal Electronic energy + Delta-G solvation = -29523.917125 eV Core-core repulsion = 24442.873031 eV Total energy + Delta-G solvation = -5081.044094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.39530 -49.17956 -48.02909 -47.70535 -41.62973 -41.03374 -38.42930 -37.33132 -36.49396 -34.51847 -32.74285 -30.67009 -29.92358 -26.61606 -25.99039 -24.34579 -23.26659 -21.71709 -21.25916 -19.89143 -19.54351 -18.87507 -18.80791 -18.68922 -18.51429 -17.89318 -17.29086 -16.94635 -16.62410 -16.49144 -16.23916 -15.91399 -15.42008 -15.16043 -14.96951 -14.83390 -14.51733 -14.43522 -14.32540 -14.25052 -13.98974 -13.93477 -13.87006 -13.78187 -13.03723 -12.94804 -12.78223 -12.74901 -12.59412 -12.55236 -12.29093 -12.20115 -11.77521 -11.59246 -11.34498 -10.66208 -10.23457 -9.66974 -8.19318 -6.50555 0.70652 1.25064 1.49601 1.51468 1.59987 1.73789 2.03183 2.38165 2.54549 2.64162 2.90493 2.95996 3.03538 3.38138 3.78459 3.80556 3.87765 3.96359 4.06870 4.18329 4.40855 4.49819 4.61955 4.70688 4.85907 4.91578 5.11158 5.31218 5.39769 5.53642 5.65919 5.94902 6.54018 6.72259 6.95153 7.19593 7.51933 8.73232 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022217 B = 0.003506 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.996976 B = 7985.356585 C = 8496.283808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.270 3.730 10 H 0.047 0.953 11 N -0.713 5.713 12 C 0.717 3.283 13 O -0.622 6.622 14 N -0.638 5.638 15 C 0.089 3.911 16 C -0.121 4.121 17 C 0.118 3.882 18 F -0.178 7.178 19 C 0.494 3.506 20 O -0.504 6.504 21 O -0.499 6.499 22 C 0.113 3.887 23 C 0.413 3.587 24 F -0.219 7.219 25 F -0.150 7.150 26 F -0.202 7.202 27 H 0.269 0.731 28 H 0.410 0.590 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.438 0.562 34 H 0.088 0.912 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -15.006 0.551 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.189 4.189 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.162 3.838 10 H 0.065 0.935 11 N -0.367 5.367 12 C 0.419 3.581 13 O -0.502 6.502 14 N -0.377 5.377 15 C -0.033 4.033 16 C -0.158 4.158 17 C 0.097 3.903 18 F -0.158 7.158 19 C 0.333 3.667 20 O -0.392 6.392 21 O -0.313 6.313 22 C -0.011 4.011 23 C 0.357 3.643 24 F -0.201 7.201 25 F -0.132 7.132 26 F -0.184 7.184 27 H 0.079 0.921 28 H 0.247 0.753 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.302 0.698 34 H 0.107 0.893 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.448 -14.663 0.691 18.018 hybrid contribution 0.019 0.232 -0.262 0.350 sum 10.467 -14.432 0.429 17.833 Atomic orbital electron populations 1.70532 1.07508 1.28254 1.44543 1.25994 0.95879 1.03645 0.93428 0.85200 0.77976 0.76702 0.79381 1.18919 1.21116 1.18740 1.21167 0.94563 0.88113 1.55927 0.88870 1.19231 0.88396 0.86419 0.89766 0.93509 1.44957 1.17493 1.08695 1.65571 1.15616 0.83316 0.80304 0.78886 1.90902 1.21377 1.83269 1.54667 1.47344 1.14480 1.09771 1.66104 1.22399 0.80571 0.98787 1.01531 1.23250 1.00585 0.94633 0.97377 1.21781 0.98078 0.87418 0.83009 1.92974 1.90802 1.89571 1.42483 1.22746 0.75723 0.89960 0.78298 1.90773 1.40742 1.71124 1.36577 1.84543 1.64375 1.28531 1.53887 1.22522 0.94225 0.82730 1.01636 1.23320 0.80890 0.72373 0.87761 1.93063 1.81575 1.48443 1.97012 1.93378 1.68962 1.54514 1.96310 1.92982 1.74136 1.96145 1.55148 0.92142 0.75298 0.88524 0.89387 0.85371 0.85936 0.69761 0.89313 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.19 9.50 21.45 0.20 -47.99 16 2 C 0.02 0.82 5.20 84.65 0.44 1.26 16 3 Si 0.98 39.92 29.54 68.60 2.03 41.94 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.56 -27.94 8.46 25.60 0.22 -27.73 16 8 H 0.09 4.23 7.74 -2.91 -0.02 4.20 16 9 C 0.27 13.53 2.21 44.24 0.10 13.63 16 10 H 0.05 2.73 7.58 -2.39 -0.02 2.71 16 11 N -0.71 -28.98 4.95 -461.43 -2.28 -31.26 16 12 C 0.72 28.97 8.02 179.05 1.44 30.40 16 13 O -0.62 -30.80 15.17 -3.96 -0.06 -30.86 16 14 N -0.64 -18.54 3.33 -829.78 -2.76 -21.30 16 15 C 0.09 1.70 6.15 86.73 0.53 2.23 16 16 C -0.12 -1.75 5.88 31.79 0.19 -1.57 16 17 C 0.12 2.24 1.59 -10.15 -0.02 2.22 16 18 F -0.18 -4.05 17.01 44.97 0.76 -3.29 16 19 C 0.49 8.34 7.42 71.24 0.53 8.86 16 20 O -0.50 -9.91 16.48 21.97 0.36 -9.55 16 21 O -0.50 -6.38 13.42 -51.39 -0.69 -7.07 16 22 C 0.11 2.74 6.17 86.85 0.54 3.28 16 23 C 0.41 21.39 2.81 71.98 0.20 21.59 16 24 F -0.22 -11.39 15.68 44.97 0.70 -10.69 16 25 F -0.15 -8.47 12.91 44.97 0.58 -7.89 16 26 F -0.20 -9.79 16.94 44.97 0.76 -9.03 16 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.41 13.82 7.52 -92.71 -0.70 13.13 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.12 1.55 7.40 -2.38 -0.02 1.54 16 33 H 0.44 1.13 9.10 -74.06 -0.67 0.46 16 34 H 0.09 2.46 8.04 -2.39 -0.02 2.44 16 35 H 0.10 2.16 8.03 -2.39 -0.02 2.14 16 Total: -1.00 -72.00 318.31 3.60 -68.40 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.18 Total: 14.40 kcal Atomic # 6 Polarization: 50.02 SS G_CDS: 4.16 Total: 54.18 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.84 Total: -100.55 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -0.39 Total: -47.48 kcal Atomic # 9 Polarization: -33.71 SS G_CDS: 2.81 Total: -30.90 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -72.00 3.60 -68.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061723.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.729 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -314.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -311.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds