Wall clock time and date at job start Tue Mar 31 2020 15:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47162 * 269.99434 * 3 2 1 5 5 H 1.48499 * 109.47434 * 29.99847 * 3 2 1 6 6 H 1.48506 * 109.46888 * 149.99922 * 3 2 1 7 7 C 1.37875 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00349 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47051 * 60.00153 * 9 7 2 11 11 N 1.46506 * 109.46947 * 180.02562 * 9 7 2 12 12 C 1.34776 * 119.99406 * 204.99914 * 11 9 7 13 13 O 1.21585 * 120.00510 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99553 * 180.02562 * 12 11 9 15 15 C 1.47421 * 125.64852 * 359.97088 * 14 12 11 16 16 C 1.54917 * 104.83002 * 155.91133 * 15 14 12 17 17 C 1.55151 * 101.58025 * 37.01304 * 16 15 14 18 18 F 1.39898 * 110.72176 * 82.86245 * 17 16 15 19 19 C 1.50703 * 110.71812 * 206.13470 * 17 16 15 20 20 O 1.20830 * 120.00086 * 10.00479 * 19 17 16 21 21 O 1.34225 * 119.99855 * 189.99885 * 19 17 16 22 22 C 1.47021 * 125.64696 * 180.02562 * 14 12 11 23 23 C 1.52993 * 109.47245 * 300.00272 * 9 7 2 24 24 F 1.39905 * 109.47467 * 299.99961 * 23 9 7 25 25 F 1.39898 * 109.47198 * 59.99684 * 23 9 7 26 26 F 1.39901 * 109.47503 * 179.97438 * 23 9 7 27 27 H 0.97006 * 120.00286 * 0.02562 * 1 2 3 28 28 H 0.96991 * 119.99844 * 24.99875 * 11 9 7 29 29 H 1.09002 * 110.36865 * 37.07626 * 15 14 12 30 30 H 1.09001 * 110.37117 * 274.74944 * 15 14 12 31 31 H 1.08998 * 111.00193 * 155.08783 * 16 15 14 32 32 H 1.09004 * 111.00194 * 278.93638 * 16 15 14 33 33 H 0.96704 * 117.00174 * 180.02562 * 21 19 17 34 34 H 1.08996 * 109.88310 * 300.43775 * 22 14 12 35 35 H 1.09002 * 109.88672 * 61.44815 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7165 -4.9703 -0.9392 14 7 2.7124 -5.8369 -0.4934 15 6 4.0960 -5.7844 0.0129 16 6 4.4446 -7.2517 0.3669 17 6 3.7243 -8.0257 -0.7685 18 9 4.5114 -8.0544 -1.9247 19 6 3.3762 -9.4229 -0.3239 20 8 3.4977 -9.7354 0.8370 21 8 2.9312 -10.3202 -1.2174 22 6 2.4463 -7.1916 -0.9987 23 6 0.3718 -2.5805 1.2489 24 9 1.1764 -2.5067 2.3910 25 9 -0.5373 -1.5172 1.2495 26 9 -0.3282 -3.7918 1.2487 27 1 -0.4851 0.8401 -0.0004 28 1 3.0967 -3.4866 0.3544 29 1 4.1511 -5.1563 0.9020 30 1 4.7686 -5.4104 -0.7591 31 1 5.5213 -7.4172 0.3305 32 1 4.0418 -7.5245 1.3424 33 1 2.7204 -11.2035 -0.8849 34 1 1.6122 -7.6334 -0.4536 35 1 2.2138 -7.1514 -2.0629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:00 Heat of formation + Delta-G solvation = -286.687259 kcal Electronic energy + Delta-G solvation = -29543.565110 eV Core-core repulsion = 24463.580970 eV Total energy + Delta-G solvation = -5079.984140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.34737 -48.34319 -46.00017 -45.61351 -40.80347 -39.71697 -37.29192 -36.51733 -34.70350 -32.70919 -31.50197 -29.73064 -28.24043 -25.03065 -24.51565 -23.42589 -21.51180 -20.83200 -19.73640 -18.78463 -18.52805 -17.85416 -16.99566 -16.88334 -16.63938 -16.55512 -15.85045 -15.62516 -15.49528 -15.09798 -14.98554 -14.72829 -14.45309 -13.75780 -13.44712 -13.07251 -13.03567 -12.91683 -12.70689 -12.52310 -12.39794 -12.30125 -12.12990 -12.07209 -11.96298 -11.95296 -11.81413 -11.39300 -11.20098 -10.95537 -10.85975 -10.83707 -10.42235 -9.71671 -9.67283 -8.77013 -8.68382 -8.22657 -6.25708 -4.49912 1.49342 2.15975 2.82156 3.17453 3.24148 3.26980 3.53517 3.58973 3.74515 4.07739 4.16794 4.40307 4.59307 4.61690 4.63975 4.91658 4.93773 5.29111 5.36195 5.41627 5.53502 5.69122 5.81321 5.86841 5.92227 6.07762 6.23396 6.78232 7.12211 7.27738 7.29733 7.54036 7.61211 8.42616 8.50843 9.02843 9.19067 10.65960 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.003516 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.142901 B = 7960.716639 C = 8463.465718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.261 3.739 10 H 0.087 0.913 11 N -0.720 5.720 12 C 0.721 3.279 13 O -0.574 6.574 14 N -0.642 5.642 15 C 0.098 3.902 16 C -0.138 4.138 17 C 0.121 3.879 18 F -0.171 7.171 19 C 0.481 3.519 20 O -0.488 6.488 21 O -0.500 6.500 22 C 0.121 3.879 23 C 0.416 3.584 24 F -0.210 7.210 25 F -0.137 7.137 26 F -0.217 7.217 27 H 0.269 0.731 28 H 0.395 0.605 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.417 0.583 34 H 0.087 0.913 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.073 -14.460 -0.500 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.104 0.896 11 N -0.373 5.373 12 C 0.423 3.577 13 O -0.451 6.451 14 N -0.383 5.383 15 C -0.025 4.025 16 C -0.176 4.176 17 C 0.101 3.899 18 F -0.151 7.151 19 C 0.320 3.680 20 O -0.375 6.375 21 O -0.312 6.312 22 C -0.004 4.004 23 C 0.359 3.641 24 F -0.192 7.192 25 F -0.118 7.118 26 F -0.199 7.199 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.276 0.724 34 H 0.105 0.895 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.075 -14.029 -0.666 16.200 hybrid contribution 0.621 0.170 0.610 0.887 sum 8.696 -13.859 -0.056 16.361 Atomic orbital electron populations 1.70403 1.05861 1.27428 1.43498 1.25075 0.95159 1.00102 0.94028 0.86195 0.79560 0.81598 0.78371 1.20178 1.20792 1.19523 1.20854 0.93782 0.87981 1.56308 0.90450 1.19668 0.88231 0.84800 0.91745 0.89572 1.45274 1.17595 1.09270 1.65136 1.15484 0.83162 0.79763 0.79288 1.90946 1.19007 1.82370 1.52748 1.47424 1.13411 1.10052 1.67428 1.22352 0.83693 0.96140 1.00307 1.23427 1.02378 0.93794 0.97971 1.21620 0.93250 0.89755 0.85321 1.92989 1.75173 1.97007 1.49913 1.23140 0.73735 0.87185 0.83986 1.90781 1.48728 1.78763 1.19183 1.84578 1.76852 1.26305 1.43467 1.22030 0.93777 0.82152 1.02391 1.23169 0.80920 0.72831 0.87155 1.92986 1.74412 1.96191 1.55586 1.93404 1.68386 1.53796 1.96197 1.93074 1.81434 1.48395 1.96965 0.92066 0.77065 0.89136 0.90294 0.87514 0.86876 0.72354 0.89517 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.73 9.50 55.43 0.53 -22.21 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.55 -13.82 8.47 -34.44 -0.29 -14.11 16 8 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 9 C 0.26 6.44 2.21 -69.08 -0.15 6.28 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 11 N -0.72 -14.61 4.94 -59.81 -0.30 -14.90 16 12 C 0.72 14.43 8.02 -86.92 -0.70 13.74 16 13 O -0.57 -13.77 15.24 5.29 0.08 -13.69 16 14 N -0.64 -9.63 3.33 -176.24 -0.59 -10.21 16 15 C 0.10 1.06 6.57 -2.53 -0.02 1.04 16 16 C -0.14 -1.25 6.08 -24.58 -0.15 -1.40 16 17 C 0.12 1.26 1.53 -89.94 -0.14 1.12 16 18 F -0.17 -1.87 16.95 2.25 0.04 -1.83 16 19 C 0.48 4.79 7.25 36.01 0.26 5.05 16 20 O -0.49 -5.80 16.43 -18.75 -0.31 -6.11 16 21 O -0.50 -3.82 13.42 -39.24 -0.53 -4.35 16 22 C 0.12 1.55 6.27 -3.06 -0.02 1.53 16 23 C 0.42 10.61 2.81 37.15 0.10 10.72 16 24 F -0.21 -5.12 16.94 2.25 0.04 -5.09 16 25 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 26 F -0.22 -5.54 15.68 2.25 0.04 -5.51 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.40 6.85 7.02 -40.82 -0.29 6.56 16 29 H 0.09 0.90 7.30 -51.93 -0.38 0.52 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.07 7.27 -51.93 -0.38 0.69 16 33 H 0.42 1.17 9.10 45.56 0.41 1.59 16 34 H 0.09 1.13 7.81 -51.93 -0.41 0.72 16 35 H 0.10 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -32.91 317.13 -4.64 -37.54 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.24 Total: 5.01 kcal Atomic # 6 Polarization: 26.75 SS G_CDS: -1.19 Total: 25.56 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.36 Total: -47.32 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.75 Total: -24.14 kcal Atomic # 9 Polarization: -16.30 SS G_CDS: 0.14 Total: -16.16 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.91 -4.64 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.144 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds