Wall clock time and date at job start Tue Mar 31 2020 15:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47162 * 269.99434 * 3 2 1 5 5 H 1.48499 * 109.47434 * 29.99847 * 3 2 1 6 6 H 1.48506 * 109.46888 * 149.99922 * 3 2 1 7 7 C 1.37875 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00349 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47051 * 60.00153 * 9 7 2 11 11 N 1.46506 * 109.46947 * 180.02562 * 9 7 2 12 12 C 1.34776 * 119.99406 * 204.99914 * 11 9 7 13 13 O 1.21585 * 120.00510 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99553 * 180.02562 * 12 11 9 15 15 C 1.47421 * 125.64852 * 359.97088 * 14 12 11 16 16 C 1.54917 * 104.83002 * 155.91133 * 15 14 12 17 17 C 1.55151 * 101.58025 * 37.01304 * 16 15 14 18 18 F 1.39898 * 110.72176 * 82.86245 * 17 16 15 19 19 C 1.50703 * 110.71812 * 206.13470 * 17 16 15 20 20 O 1.20830 * 120.00086 * 10.00479 * 19 17 16 21 21 O 1.34225 * 119.99855 * 189.99885 * 19 17 16 22 22 C 1.47021 * 125.64696 * 180.02562 * 14 12 11 23 23 C 1.52993 * 109.47245 * 300.00272 * 9 7 2 24 24 F 1.39905 * 109.47467 * 299.99961 * 23 9 7 25 25 F 1.39898 * 109.47198 * 59.99684 * 23 9 7 26 26 F 1.39901 * 109.47503 * 179.97438 * 23 9 7 27 27 H 0.97006 * 120.00286 * 0.02562 * 1 2 3 28 28 H 0.96991 * 119.99844 * 24.99875 * 11 9 7 29 29 H 1.09002 * 110.36865 * 37.07626 * 15 14 12 30 30 H 1.09001 * 110.37117 * 274.74944 * 15 14 12 31 31 H 1.08998 * 111.00193 * 155.08783 * 16 15 14 32 32 H 1.09004 * 111.00194 * 278.93638 * 16 15 14 33 33 H 0.96704 * 117.00174 * 180.02562 * 21 19 17 34 34 H 1.08996 * 109.88310 * 300.43775 * 22 14 12 35 35 H 1.09002 * 109.88672 * 61.44815 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7165 -4.9703 -0.9392 14 7 2.7124 -5.8369 -0.4934 15 6 4.0960 -5.7844 0.0129 16 6 4.4446 -7.2517 0.3669 17 6 3.7243 -8.0257 -0.7685 18 9 4.5114 -8.0544 -1.9247 19 6 3.3762 -9.4229 -0.3239 20 8 3.4977 -9.7354 0.8370 21 8 2.9312 -10.3202 -1.2174 22 6 2.4463 -7.1916 -0.9987 23 6 0.3718 -2.5805 1.2489 24 9 1.1764 -2.5067 2.3910 25 9 -0.5373 -1.5172 1.2495 26 9 -0.3282 -3.7918 1.2487 27 1 -0.4851 0.8401 -0.0004 28 1 3.0967 -3.4866 0.3544 29 1 4.1511 -5.1563 0.9020 30 1 4.7686 -5.4104 -0.7591 31 1 5.5213 -7.4172 0.3305 32 1 4.0418 -7.5245 1.3424 33 1 2.7204 -11.2035 -0.8849 34 1 1.6122 -7.6334 -0.4536 35 1 2.2138 -7.1514 -2.0629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:59 Heat of formation + Delta-G solvation = -310.405257 kcal Electronic energy + Delta-G solvation = -29544.593600 eV Core-core repulsion = 24463.580970 eV Total energy + Delta-G solvation = -5081.012629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.40154 -49.19350 -48.03594 -47.71241 -41.67499 -41.04032 -38.44831 -37.32201 -36.50389 -34.52361 -32.71572 -30.71843 -29.92408 -26.62310 -26.03393 -24.36347 -23.30832 -21.67397 -21.30965 -19.91431 -19.55681 -18.89931 -18.80759 -18.71232 -18.51991 -17.91800 -17.20650 -17.00506 -16.69939 -16.56251 -16.14590 -15.96996 -15.40063 -15.12641 -14.96451 -14.78557 -14.54957 -14.44576 -14.38985 -14.27097 -14.02501 -13.92583 -13.84465 -13.72302 -13.04097 -12.97123 -12.79891 -12.78110 -12.69984 -12.59104 -12.25140 -12.19423 -11.77755 -11.58109 -11.35752 -10.66953 -10.26219 -9.69271 -8.19718 -6.50734 0.69428 1.23493 1.49492 1.50328 1.61599 1.71192 2.02202 2.37956 2.54448 2.66677 2.88183 2.94673 2.98074 3.30024 3.78507 3.80045 3.87217 3.90783 4.09184 4.17106 4.35661 4.48344 4.58915 4.69234 4.84481 4.93444 5.07826 5.30818 5.38991 5.52763 5.65823 5.92778 6.54243 6.70171 6.93809 7.19496 7.50874 8.73161 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.003516 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.142901 B = 7960.716639 C = 8463.465718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.270 3.730 10 H 0.048 0.952 11 N -0.713 5.713 12 C 0.717 3.283 13 O -0.622 6.622 14 N -0.638 5.638 15 C 0.090 3.910 16 C -0.127 4.127 17 C 0.128 3.872 18 F -0.172 7.172 19 C 0.489 3.511 20 O -0.508 6.508 21 O -0.498 6.498 22 C 0.115 3.885 23 C 0.413 3.587 24 F -0.202 7.202 25 F -0.150 7.150 26 F -0.220 7.220 27 H 0.268 0.732 28 H 0.411 0.589 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.438 0.562 34 H 0.082 0.918 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.622 -14.910 -0.214 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.596 4.596 8 H 0.112 0.888 9 C 0.162 3.838 10 H 0.066 0.934 11 N -0.367 5.367 12 C 0.419 3.581 13 O -0.502 6.502 14 N -0.377 5.377 15 C -0.032 4.032 16 C -0.165 4.165 17 C 0.107 3.893 18 F -0.152 7.152 19 C 0.328 3.672 20 O -0.396 6.396 21 O -0.312 6.312 22 C -0.010 4.010 23 C 0.356 3.644 24 F -0.184 7.184 25 F -0.132 7.132 26 F -0.202 7.202 27 H 0.078 0.922 28 H 0.248 0.752 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.302 0.698 34 H 0.100 0.900 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.695 -14.552 -0.377 18.064 hybrid contribution -0.191 0.180 0.482 0.549 sum 10.505 -14.372 0.105 17.802 Atomic orbital electron populations 1.70538 1.07536 1.28188 1.44617 1.25996 0.95875 1.03672 0.93442 0.85141 0.78551 0.76999 0.78531 1.19609 1.21166 1.18055 1.21202 0.94597 0.88044 1.55797 0.88773 1.19246 0.88397 0.86431 0.89738 0.93437 1.44963 1.17572 1.08659 1.65527 1.15599 0.83216 0.80385 0.78917 1.90905 1.21409 1.83285 1.54648 1.47347 1.14420 1.09543 1.66408 1.22711 0.81286 0.97899 1.01268 1.23450 1.04061 0.91880 0.97110 1.21508 0.92095 0.90014 0.85664 1.92990 1.74999 1.97040 1.50160 1.22908 0.73371 0.87203 0.83708 1.90783 1.49772 1.79161 1.19925 1.84534 1.76118 1.27523 1.43017 1.22145 0.95353 0.81466 1.02001 1.23348 0.80884 0.72347 0.87817 1.92985 1.74083 1.96146 1.55203 1.93376 1.68975 1.54508 1.96315 1.93064 1.81592 1.48493 1.97016 0.92158 0.75232 0.88055 0.88489 0.84452 0.87053 0.69835 0.89998 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.09 9.50 21.45 0.20 -47.89 16 2 C 0.02 0.79 5.20 84.65 0.44 1.23 16 3 Si 0.98 39.74 29.54 68.60 2.03 41.77 16 4 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.29 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.56 -27.70 8.47 25.60 0.22 -27.48 16 8 H 0.09 4.24 7.74 -2.91 -0.02 4.21 16 9 C 0.27 13.46 2.21 44.24 0.10 13.56 16 10 H 0.05 2.75 7.58 -2.39 -0.02 2.73 16 11 N -0.71 -28.74 4.94 -461.40 -2.28 -31.02 16 12 C 0.72 28.85 8.02 179.05 1.44 30.28 16 13 O -0.62 -30.77 15.24 -3.98 -0.06 -30.83 16 14 N -0.64 -18.55 3.33 -829.75 -2.76 -21.31 16 15 C 0.09 1.70 6.57 86.86 0.57 2.28 16 16 C -0.13 -1.94 6.08 31.99 0.19 -1.74 16 17 C 0.13 2.39 1.53 -10.35 -0.02 2.37 16 18 F -0.17 -3.36 16.95 44.97 0.76 -2.59 16 19 C 0.49 8.77 7.25 71.24 0.52 9.28 16 20 O -0.51 -11.10 16.43 21.95 0.36 -10.74 16 21 O -0.50 -6.55 13.42 -51.37 -0.69 -7.24 16 22 C 0.11 2.85 6.27 86.73 0.54 3.40 16 23 C 0.41 21.37 2.81 71.98 0.20 21.57 16 24 F -0.20 -9.80 16.94 44.97 0.76 -9.04 16 25 F -0.15 -8.48 12.91 44.97 0.58 -7.90 16 26 F -0.22 -11.48 15.68 44.97 0.70 -10.77 16 27 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 28 H 0.41 13.64 7.02 -92.72 -0.65 12.98 16 29 H 0.10 1.73 7.30 -2.39 -0.02 1.72 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.82 7.27 -2.38 -0.02 1.80 16 33 H 0.44 1.45 9.10 -74.05 -0.67 0.78 16 34 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 35 H 0.09 2.35 8.12 -2.39 -0.02 2.33 16 Total: -1.00 -71.63 317.13 3.69 -67.94 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.13 Total: 14.87 kcal Atomic # 6 Polarization: 50.54 SS G_CDS: 4.20 Total: 54.74 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -4.84 Total: -100.22 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.39 Total: -48.80 kcal Atomic # 9 Polarization: -33.11 SS G_CDS: 2.81 Total: -30.30 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -71.63 3.69 -67.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.461 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -314.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -310.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds