Wall clock time and date at job start Tue Mar 31 2020 15:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00155 * 2 1 4 4 H 1.48501 * 109.47212 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47421 * 30.00113 * 3 2 1 6 6 H 1.48504 * 109.47342 * 150.00138 * 3 2 1 7 7 C 1.37881 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99396 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00447 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46984 * 300.00326 * 9 7 2 11 11 N 1.46499 * 109.47278 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99665 * 155.27952 * 11 9 7 13 13 O 1.21583 * 120.00270 * 359.72083 * 12 11 9 14 14 N 1.34775 * 119.99585 * 179.72218 * 12 11 9 15 15 C 1.47429 * 125.64913 * 359.69312 * 14 12 11 16 16 C 1.55131 * 104.72085 * 155.81340 * 15 14 12 17 17 C 1.55160 * 101.48645 * 37.29437 * 16 15 14 18 18 F 1.39902 * 110.72167 * 82.69248 * 17 16 15 19 19 C 1.50700 * 110.72135 * 205.96527 * 17 16 15 20 20 O 1.20828 * 119.99923 * 4.98342 * 19 17 16 21 21 O 1.34229 * 119.99828 * 184.97199 * 19 17 16 22 22 C 1.47023 * 125.64494 * 179.97438 * 14 12 11 23 23 C 1.53008 * 109.46920 * 60.00039 * 9 7 2 24 24 F 1.39897 * 109.46860 * 180.02562 * 23 9 7 25 25 F 1.39911 * 109.46854 * 299.99930 * 23 9 7 26 26 F 1.39898 * 109.47268 * 59.99952 * 23 9 7 27 27 H 0.97000 * 120.00295 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99790 * 334.99665 * 11 9 7 29 29 H 1.08997 * 110.36623 * 274.74342 * 15 14 12 30 30 H 1.08995 * 110.36692 * 37.07015 * 15 14 12 31 31 H 1.08995 * 111.19675 * 279.19420 * 16 15 14 32 32 H 1.09003 * 110.90522 * 155.27188 * 16 15 14 33 33 H 0.96710 * 116.99475 * 179.97438 * 21 19 17 34 34 H 1.09005 * 109.88380 * 300.43914 * 22 14 12 35 35 H 1.08995 * 109.88257 * 61.45404 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8919 11 7 2.2029 -3.6127 0.0015 12 6 1.8353 -4.8137 0.4904 13 8 0.7152 -4.9715 0.9363 14 7 2.7093 -5.8396 0.4851 15 6 4.0902 -5.7893 -0.0288 16 6 4.8330 -6.9233 0.7254 17 6 3.7348 -8.0169 0.7982 18 9 3.6875 -8.7510 -0.3918 19 6 3.9646 -8.9257 1.9782 20 8 4.8549 -8.6877 2.7596 21 8 3.1801 -9.9994 2.1611 22 6 2.4415 -7.1959 0.9854 23 6 0.3708 -2.5811 -1.2472 24 9 -0.3291 -3.7924 -1.2458 25 9 -0.5383 -1.5176 -1.2475 26 9 1.1747 -2.5077 -2.3898 27 1 -0.4850 0.8400 0.0004 28 1 3.0965 -3.4868 -0.3544 29 1 4.1022 -5.9736 -1.1030 30 1 4.5438 -4.8241 0.1965 31 1 5.1319 -6.6029 1.7234 32 1 5.6937 -7.2714 0.1543 33 1 3.3663 -10.5529 2.9320 34 1 2.1774 -7.1558 2.0422 35 1 1.6281 -7.6468 0.4170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:02 Heat of formation + Delta-G solvation = -286.442141 kcal Electronic energy + Delta-G solvation = -29519.026573 eV Core-core repulsion = 24439.053063 eV Total energy + Delta-G solvation = -5079.973510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.35019 -48.33736 -45.99151 -45.60469 -40.80494 -39.71555 -37.27662 -36.53822 -34.70284 -32.71067 -31.50126 -29.71798 -28.23903 -25.01851 -24.51040 -23.43353 -21.50834 -20.84436 -19.73242 -18.75846 -18.52866 -17.86366 -17.02375 -16.88043 -16.64072 -16.51784 -15.80528 -15.78349 -15.36825 -15.12039 -14.99314 -14.72710 -14.47001 -13.77547 -13.35601 -13.11446 -13.06825 -12.86049 -12.74529 -12.49830 -12.38776 -12.29901 -12.13200 -12.07244 -11.96868 -11.94659 -11.80741 -11.38711 -11.18751 -10.96632 -10.90035 -10.82333 -10.42051 -9.71109 -9.66413 -8.77408 -8.68562 -8.22344 -6.25656 -4.50054 1.48736 2.15795 2.81843 3.17543 3.24016 3.26414 3.52405 3.58861 3.74565 4.09304 4.17097 4.41663 4.56861 4.61920 4.65016 4.91632 4.93843 5.29515 5.35998 5.41664 5.54815 5.69376 5.81413 5.87535 5.91353 6.08005 6.23843 6.78446 7.12318 7.27280 7.29427 7.53980 7.61114 8.42554 8.50750 9.02940 9.18948 10.65874 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.003518 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.911673 B = 7956.229891 C = 8491.686188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.086 0.914 11 N -0.720 5.720 12 C 0.721 3.279 13 O -0.574 6.574 14 N -0.642 5.642 15 C 0.098 3.902 16 C -0.136 4.136 17 C 0.120 3.880 18 F -0.170 7.170 19 C 0.481 3.519 20 O -0.489 6.489 21 O -0.500 6.500 22 C 0.121 3.879 23 C 0.415 3.585 24 F -0.216 7.216 25 F -0.137 7.137 26 F -0.210 7.210 27 H 0.269 0.731 28 H 0.395 0.605 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.417 0.583 34 H 0.087 0.913 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -14.124 1.470 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.104 0.896 11 N -0.373 5.373 12 C 0.423 3.577 13 O -0.451 6.451 14 N -0.384 5.384 15 C -0.025 4.025 16 C -0.174 4.174 17 C 0.100 3.900 18 F -0.151 7.151 19 C 0.320 3.680 20 O -0.375 6.375 21 O -0.312 6.312 22 C -0.004 4.004 23 C 0.359 3.641 24 F -0.198 7.198 25 F -0.118 7.118 26 F -0.192 7.192 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.277 0.723 34 H 0.105 0.895 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.300 -13.705 1.638 16.106 hybrid contribution 0.801 0.316 -0.133 0.871 sum 9.101 -13.388 1.505 16.259 Atomic orbital electron populations 1.70402 1.05858 1.27424 1.43487 1.25074 0.95158 1.00095 0.94028 0.86198 0.79517 0.81597 0.78431 1.20209 1.20789 1.19494 1.20851 0.93767 0.87988 1.56329 0.90468 1.19666 0.88211 0.84786 0.91753 0.89599 1.45277 1.17524 1.09178 1.65310 1.15486 0.83172 0.79719 0.79332 1.90945 1.18948 1.82422 1.52749 1.47432 1.13711 1.09837 1.67370 1.22403 0.81867 0.99630 0.98647 1.23448 0.96425 0.92765 1.04782 1.21626 1.00744 0.88989 0.78632 1.92992 1.97431 1.78280 1.46346 1.23138 0.78800 0.79925 0.86131 1.90777 1.30865 1.71181 1.44652 1.84583 1.57561 1.37448 1.51597 1.22040 0.94057 0.82251 1.02036 1.23167 0.80944 0.72847 0.87149 1.93075 1.81429 1.48367 1.96959 1.93407 1.68391 1.53796 1.96199 1.92985 1.74448 1.96192 1.55534 0.92068 0.77073 0.90374 0.89038 0.86905 0.87540 0.72342 0.89487 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.72 9.50 55.43 0.53 -22.19 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.55 -13.80 8.46 -34.44 -0.29 -14.09 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 9 C 0.26 6.44 2.21 -69.08 -0.15 6.29 16 10 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 11 N -0.72 -14.60 4.95 -59.81 -0.30 -14.89 16 12 C 0.72 14.42 8.02 -86.92 -0.70 13.72 16 13 O -0.57 -13.75 15.23 5.29 0.08 -13.67 16 14 N -0.64 -9.62 3.32 -176.09 -0.59 -10.20 16 15 C 0.10 1.05 6.59 -2.41 -0.02 1.03 16 16 C -0.14 -1.22 6.04 -24.46 -0.15 -1.37 16 17 C 0.12 1.25 1.53 -89.93 -0.14 1.11 16 18 F -0.17 -1.90 16.96 2.25 0.04 -1.86 16 19 C 0.48 4.74 7.26 36.01 0.26 5.00 16 20 O -0.49 -5.69 16.43 -18.75 -0.31 -5.99 16 21 O -0.50 -3.79 13.42 -39.25 -0.53 -4.32 16 22 C 0.12 1.55 6.27 -3.06 -0.02 1.53 16 23 C 0.42 10.62 2.81 37.16 0.10 10.73 16 24 F -0.22 -5.55 15.65 2.25 0.04 -5.51 16 25 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 26 F -0.21 -5.14 16.94 2.25 0.04 -5.10 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.40 6.84 7.01 -40.82 -0.29 6.55 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.88 7.29 -51.93 -0.38 0.51 16 31 H 0.11 1.03 7.33 -51.93 -0.38 0.65 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.42 1.14 9.10 45.56 0.41 1.55 16 34 H 0.09 1.09 7.81 -51.93 -0.41 0.69 16 35 H 0.10 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -32.91 317.14 -4.64 -37.55 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -2.24 Total: 4.90 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: -1.19 Total: 25.53 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.35 Total: -47.28 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.75 Total: -23.98 kcal Atomic # 9 Polarization: -16.36 SS G_CDS: 0.14 Total: -16.22 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.91 -4.64 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -248.894 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds