Wall clock time and date at job start Tue Mar 31 2020 15:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14957 * 319.61580 * 3 2 1 5 5 C 1.37926 * 119.84241 * 180.02562 * 4 3 2 6 6 C 1.38381 * 120.15440 * 359.97438 * 5 4 3 7 7 C 1.38346 * 120.30691 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.92476 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.46816 * 160.00516 * 8 7 6 10 10 N 1.46897 * 109.47019 * 40.00929 * 8 7 6 11 11 C 1.46897 * 111.00058 * 137.58266 * 10 8 7 12 12 H 1.08997 * 109.47303 * 339.18307 * 11 10 8 13 13 C 1.50706 * 109.47120 * 219.17951 * 11 10 8 14 14 H 1.08000 * 120.00175 * 275.22472 * 13 11 10 15 15 C 1.37870 * 119.99683 * 95.22517 * 13 11 10 16 16 N 1.31519 * 120.00125 * 185.51816 * 15 13 11 17 17 Si 1.86799 * 120.00251 * 5.51634 * 15 13 11 18 18 H 1.48500 * 109.47333 * 89.37655 * 17 15 13 19 19 H 1.48508 * 109.47335 * 209.37818 * 17 15 13 20 20 H 1.48504 * 109.47200 * 329.37638 * 17 15 13 21 21 C 1.53000 * 109.47288 * 99.18164 * 11 10 8 22 22 F 1.39906 * 109.47064 * 60.59385 * 21 11 10 23 23 F 1.39893 * 109.47361 * 180.59220 * 21 11 10 24 24 F 1.39903 * 109.47275 * 300.59536 * 21 11 10 25 25 C 1.50701 * 109.47301 * 280.00050 * 8 7 6 26 26 O 1.20827 * 119.99446 * 93.88513 * 25 8 7 27 27 O 1.34220 * 120.00433 * 273.88129 * 25 8 7 28 28 C 1.37969 * 120.14668 * 0.27981 * 7 6 5 29 29 H 1.07993 * 120.07954 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92494 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.85357 * 179.97438 * 6 5 4 32 32 H 1.00901 * 111.00338 * 13.62184 * 10 8 7 33 33 H 0.96992 * 120.00164 * 180.02562 * 16 15 13 34 34 H 0.96694 * 117.00452 * 179.97438 * 27 25 8 35 35 H 1.07999 * 120.07672 * 179.72163 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.9189 0.7824 5 6 4.6490 -0.9123 0.7780 6 6 5.3373 0.0023 0.0004 7 6 4.6484 0.9153 -0.7779 8 6 5.4067 1.9078 -1.6211 9 1 4.7554 2.2887 -2.4078 10 7 6.5711 1.2476 -2.2262 11 6 6.7321 1.6474 -3.6305 12 1 5.7848 2.0302 -4.0102 13 6 7.1551 0.4536 -4.4473 14 1 8.1990 0.1837 -4.5088 15 6 6.2093 -0.2941 -5.1162 16 7 6.5631 -1.3970 -5.7392 17 14 4.4252 0.2593 -5.1374 18 1 4.1984 1.1544 -6.3004 19 1 3.5399 -0.9280 -5.2465 20 1 4.1190 0.9914 -3.8822 21 6 7.8001 2.7383 -3.7311 22 9 9.0192 2.2426 -3.2564 23 9 7.9438 3.1286 -5.0668 24 9 7.4139 3.8413 -2.9620 25 6 5.8707 3.0512 -0.7559 26 8 6.9756 3.0293 -0.2674 27 8 5.0567 4.0937 -0.5280 28 6 3.2688 0.9233 -0.7790 29 1 2.7339 -1.6334 1.3894 30 1 5.1931 -1.6226 1.3829 31 1 6.4174 0.0034 0.0009 32 1 6.5027 0.2445 -2.1413 33 1 5.8978 -1.9228 -6.2100 34 1 5.3982 4.8029 0.0336 35 1 2.7321 1.6395 -1.3835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:47 Heat of formation + Delta-G solvation = -182.933208 kcal Electronic energy + Delta-G solvation = -28688.095163 eV Core-core repulsion = 24043.379362 eV Total energy + Delta-G solvation = -4644.715802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.02364 -46.61057 -46.43661 -40.44772 -39.27954 -36.91110 -36.17800 -35.57104 -33.25507 -31.72373 -31.48386 -28.80143 -26.08144 -24.99028 -23.99508 -22.82288 -21.15578 -20.75391 -18.81840 -18.21256 -17.66112 -17.49265 -16.82815 -16.52146 -16.45571 -15.97443 -15.75622 -15.50214 -14.80038 -14.30468 -14.18904 -14.00110 -13.73556 -13.49238 -13.30762 -13.26109 -13.11576 -12.99902 -12.93528 -12.75646 -12.67594 -12.63856 -12.48590 -12.34084 -11.83585 -11.60397 -11.29953 -11.24225 -11.03608 -10.67087 -10.33228 -10.25282 -9.80070 -9.14746 -9.08166 -8.99272 -8.20206 -6.55534 -4.66726 0.60259 1.04263 2.46924 2.55706 2.76347 2.90945 3.00269 3.08903 3.16861 3.64201 3.73621 3.85584 3.96289 4.37807 4.47751 4.66919 4.81787 4.87353 5.07792 5.13054 5.18293 5.28891 5.34502 5.52750 5.58939 5.61307 5.72527 5.97279 6.02308 6.16243 6.28065 6.58624 6.75020 6.79287 7.27336 7.31096 7.76155 8.02752 8.23769 8.56107 8.98690 10.54457 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.005868 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.947541 B = 4770.486292 C = 6016.510983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.260 3.740 3 C -0.037 4.037 4 C -0.065 4.065 5 C -0.118 4.118 6 C -0.062 4.062 7 C -0.096 4.096 8 C 0.132 3.868 9 H 0.095 0.905 10 N -0.663 5.663 11 C 0.147 3.853 12 H 0.057 0.943 13 C -0.535 4.535 14 H 0.096 0.904 15 C 0.093 3.907 16 N -0.861 5.861 17 Si 0.862 3.138 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.261 1.261 21 C 0.460 3.540 22 F -0.179 7.179 23 F -0.188 7.188 24 F -0.208 7.208 25 C 0.484 3.516 26 O -0.482 6.482 27 O -0.524 6.524 28 C -0.050 4.050 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.374 0.626 33 H 0.274 0.726 34 H 0.404 0.596 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 3.809 10.885 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.055 4.055 3 C -0.040 4.040 4 C -0.085 4.085 5 C -0.136 4.136 6 C -0.081 4.081 7 C -0.097 4.097 8 C 0.020 3.980 9 H 0.112 0.888 10 N -0.302 5.302 11 C 0.039 3.961 12 H 0.075 0.925 13 C -0.573 4.573 14 H 0.114 0.886 15 C -0.115 4.115 16 N -0.495 5.495 17 Si 0.688 3.312 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.186 1.186 21 C 0.405 3.595 22 F -0.160 7.160 23 F -0.170 7.170 24 F -0.189 7.189 25 C 0.322 3.678 26 O -0.366 6.366 27 O -0.335 6.335 28 C -0.071 4.071 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.201 0.799 33 H 0.085 0.915 34 H 0.262 0.738 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.793 3.763 10.873 12.882 hybrid contribution -0.764 0.474 -0.267 0.938 sum -6.557 4.237 10.607 13.170 Atomic orbital electron populations 1.81240 1.12026 1.08087 1.08402 1.25671 0.92606 0.93638 0.93591 1.15885 0.84291 1.00782 1.03063 1.21223 0.94516 0.96358 0.96418 1.21123 0.93417 0.99281 0.99805 1.21516 1.01887 0.92306 0.92373 1.19575 0.92940 0.97870 0.99295 1.20089 0.92788 0.90197 0.94938 0.88750 1.60398 1.37172 1.14531 1.18093 1.20723 0.93058 0.94572 0.87784 0.92507 1.20761 0.97615 1.09296 1.29627 0.88643 1.25003 0.98715 0.94064 0.93750 1.69843 1.35289 1.13108 1.31241 0.87097 0.84955 0.79429 0.79739 1.19131 1.20233 1.18607 1.21037 0.84270 0.82004 0.72228 1.93096 1.47200 1.87431 1.88295 1.93096 1.96266 1.91898 1.35748 1.93055 1.91158 1.58267 1.76468 1.23383 0.82916 0.82224 0.79241 1.90675 1.20734 1.78286 1.46933 1.84517 1.49507 1.31802 1.67711 1.21083 0.93337 0.96528 0.96172 0.84858 0.84338 0.83472 0.79863 0.91549 0.73766 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.09 18.54 41.84 0.78 -5.31 16 2 C 0.26 3.25 15.33 -22.47 -0.34 2.90 16 3 C -0.04 -0.41 5.73 -106.93 -0.61 -1.02 16 4 C -0.06 -0.60 9.76 -39.17 -0.38 -0.98 16 5 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 6 C -0.06 -0.74 8.74 -39.49 -0.35 -1.08 16 7 C -0.10 -1.28 4.74 -104.68 -0.50 -1.78 16 8 C 0.13 2.09 2.49 -70.02 -0.17 1.91 16 9 H 0.09 1.50 5.80 -51.93 -0.30 1.20 16 10 N -0.66 -12.22 5.38 -103.40 -0.56 -12.78 16 11 C 0.15 3.08 1.77 -68.86 -0.12 2.96 16 12 H 0.06 1.17 4.12 -51.93 -0.21 0.95 16 13 C -0.53 -12.99 8.28 -34.44 -0.29 -13.27 16 14 H 0.10 2.61 7.83 -52.49 -0.41 2.20 16 15 C 0.09 2.29 5.47 -17.82 -0.10 2.20 16 16 N -0.86 -22.84 13.96 55.43 0.77 -22.06 16 17 Si 0.86 17.98 27.15 -169.99 -4.62 13.36 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.26 -4.83 5.24 56.52 0.30 -4.53 16 21 C 0.46 9.84 2.82 37.16 0.10 9.95 16 22 F -0.18 -4.02 16.78 2.25 0.04 -3.98 16 23 F -0.19 -4.10 17.04 2.25 0.04 -4.06 16 24 F -0.21 -4.20 15.07 2.25 0.03 -4.16 16 25 C 0.48 7.67 5.88 36.01 0.21 7.88 16 26 O -0.48 -8.90 17.06 -18.75 -0.32 -9.22 16 27 O -0.52 -6.62 13.42 -39.23 -0.53 -7.15 16 28 C -0.05 -0.61 9.37 -39.17 -0.37 -0.98 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.15 1.80 7.50 -52.48 -0.39 1.41 16 32 H 0.37 6.78 6.59 -39.29 -0.26 6.52 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.40 3.37 9.10 45.56 0.41 3.79 16 35 H 0.14 1.53 8.04 -52.49 -0.42 1.11 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -29.43 327.66 -4.40 -33.83 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -1.67 Total: 9.43 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -3.31 Total: 7.17 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.99 Total: -40.15 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.85 Total: -16.37 kcal Atomic # 9 Polarization: -12.31 SS G_CDS: 0.11 Total: -12.20 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.62 Total: 13.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.43 -4.40 -33.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.104 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds