Wall clock time and date at job start Tue Mar 31 2020 15:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14957 * 319.61580 * 3 2 1 5 5 C 1.37926 * 119.84241 * 180.02562 * 4 3 2 6 6 C 1.38381 * 120.15440 * 359.97438 * 5 4 3 7 7 C 1.38346 * 120.30691 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.92476 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.46816 * 160.00516 * 8 7 6 10 10 N 1.46897 * 109.47019 * 40.00929 * 8 7 6 11 11 C 1.46897 * 111.00058 * 137.58266 * 10 8 7 12 12 H 1.08997 * 109.47303 * 339.18307 * 11 10 8 13 13 C 1.50706 * 109.47120 * 219.17951 * 11 10 8 14 14 H 1.08000 * 120.00175 * 275.22472 * 13 11 10 15 15 C 1.37870 * 119.99683 * 95.22517 * 13 11 10 16 16 N 1.31519 * 120.00125 * 185.51816 * 15 13 11 17 17 Si 1.86799 * 120.00251 * 5.51634 * 15 13 11 18 18 H 1.48500 * 109.47333 * 89.37655 * 17 15 13 19 19 H 1.48508 * 109.47335 * 209.37818 * 17 15 13 20 20 H 1.48504 * 109.47200 * 329.37638 * 17 15 13 21 21 C 1.53000 * 109.47288 * 99.18164 * 11 10 8 22 22 F 1.39906 * 109.47064 * 60.59385 * 21 11 10 23 23 F 1.39893 * 109.47361 * 180.59220 * 21 11 10 24 24 F 1.39903 * 109.47275 * 300.59536 * 21 11 10 25 25 C 1.50701 * 109.47301 * 280.00050 * 8 7 6 26 26 O 1.20827 * 119.99446 * 93.88513 * 25 8 7 27 27 O 1.34220 * 120.00433 * 273.88129 * 25 8 7 28 28 C 1.37969 * 120.14668 * 0.27981 * 7 6 5 29 29 H 1.07993 * 120.07954 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92494 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.85357 * 179.97438 * 6 5 4 32 32 H 1.00901 * 111.00338 * 13.62184 * 10 8 7 33 33 H 0.96992 * 120.00164 * 180.02562 * 16 15 13 34 34 H 0.96694 * 117.00452 * 179.97438 * 27 25 8 35 35 H 1.07999 * 120.07672 * 179.72163 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.9189 0.7824 5 6 4.6490 -0.9123 0.7780 6 6 5.3373 0.0023 0.0004 7 6 4.6484 0.9153 -0.7779 8 6 5.4067 1.9078 -1.6211 9 1 4.7554 2.2887 -2.4078 10 7 6.5711 1.2476 -2.2262 11 6 6.7321 1.6474 -3.6305 12 1 5.7848 2.0302 -4.0102 13 6 7.1551 0.4536 -4.4473 14 1 8.1990 0.1837 -4.5088 15 6 6.2093 -0.2941 -5.1162 16 7 6.5631 -1.3970 -5.7392 17 14 4.4252 0.2593 -5.1374 18 1 4.1984 1.1544 -6.3004 19 1 3.5399 -0.9280 -5.2465 20 1 4.1190 0.9914 -3.8822 21 6 7.8001 2.7383 -3.7311 22 9 9.0192 2.2426 -3.2564 23 9 7.9438 3.1286 -5.0668 24 9 7.4139 3.8413 -2.9620 25 6 5.8707 3.0512 -0.7559 26 8 6.9756 3.0293 -0.2674 27 8 5.0567 4.0937 -0.5280 28 6 3.2688 0.9233 -0.7790 29 1 2.7339 -1.6334 1.3894 30 1 5.1931 -1.6226 1.3829 31 1 6.4174 0.0034 0.0009 32 1 6.5027 0.2445 -2.1413 33 1 5.8978 -1.9228 -6.2100 34 1 5.3982 4.8029 0.0336 35 1 2.7321 1.6395 -1.3835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:46 Heat of formation + Delta-G solvation = -202.290201 kcal Electronic energy + Delta-G solvation = -28688.934545 eV Core-core repulsion = 24043.379362 eV Total energy + Delta-G solvation = -4645.555184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.75593 -48.31594 -48.20983 -41.55766 -40.27995 -38.12046 -37.34060 -36.81898 -34.87009 -33.12709 -32.34376 -30.14557 -27.39689 -26.83024 -24.93058 -23.81855 -22.65048 -22.00356 -20.09464 -19.66452 -19.22258 -18.88886 -18.47916 -18.17648 -17.42147 -17.29764 -16.88961 -16.55115 -16.30142 -15.44242 -15.42477 -15.20502 -15.13576 -15.04208 -14.85457 -14.70853 -14.59633 -14.45694 -14.40571 -14.23117 -14.17841 -13.87593 -13.81744 -13.43694 -13.12280 -12.92814 -12.55882 -12.39316 -12.31428 -12.11634 -11.87061 -11.71488 -11.54713 -10.94553 -9.98735 -9.92856 -9.67048 -8.44742 -6.61492 -0.26949 0.19077 1.26281 1.32224 1.35424 1.41147 1.54767 1.82216 1.99386 2.17841 2.20822 2.69419 2.80090 2.89619 3.09897 3.41764 3.45487 3.53310 3.76760 3.94961 4.12022 4.16445 4.23250 4.23643 4.43451 4.52641 4.69295 4.89591 5.00235 5.20407 5.33114 5.38839 5.68301 5.77609 5.78070 6.02920 6.37473 6.41195 6.54797 7.07500 7.14272 8.68905 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.005868 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.947541 B = 4770.486292 C = 6016.510983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.282 3.718 3 C -0.042 4.042 4 C -0.049 4.049 5 C -0.109 4.109 6 C -0.070 4.070 7 C -0.114 4.114 8 C 0.128 3.872 9 H 0.099 0.901 10 N -0.665 5.665 11 C 0.156 3.844 12 H 0.069 0.931 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.050 3.950 16 N -0.910 5.910 17 Si 0.915 3.085 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.225 1.225 21 C 0.456 3.544 22 F -0.188 7.188 23 F -0.193 7.193 24 F -0.198 7.198 25 C 0.489 3.511 26 O -0.515 6.515 27 O -0.513 6.513 28 C -0.053 4.053 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.138 0.862 32 H 0.375 0.625 33 H 0.276 0.724 34 H 0.425 0.575 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 4.166 12.631 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.033 4.033 3 C -0.045 4.045 4 C -0.069 4.069 5 C -0.126 4.126 6 C -0.089 4.089 7 C -0.115 4.115 8 C 0.016 3.984 9 H 0.116 0.884 10 N -0.304 5.304 11 C 0.047 3.953 12 H 0.086 0.914 13 C -0.575 4.575 14 H 0.069 0.931 15 C -0.154 4.154 16 N -0.545 5.545 17 Si 0.737 3.263 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.148 1.148 21 C 0.401 3.599 22 F -0.170 7.170 23 F -0.174 7.174 24 F -0.180 7.180 25 C 0.330 3.670 26 O -0.402 6.402 27 O -0.327 6.327 28 C -0.074 4.074 29 H 0.181 0.819 30 H 0.187 0.813 31 H 0.156 0.844 32 H 0.202 0.798 33 H 0.086 0.914 34 H 0.286 0.714 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.707 4.160 12.652 15.388 hybrid contribution -0.088 0.394 -0.726 0.830 sum -7.795 4.554 11.926 14.957 Atomic orbital electron populations 1.81271 1.13125 1.09406 1.09763 1.25755 0.92592 0.92502 0.92453 1.15919 0.83535 1.01371 1.03711 1.21583 0.94495 0.95611 0.95202 1.21423 0.93552 0.98708 0.98962 1.21588 1.01697 0.92813 0.92801 1.19393 0.93272 0.98356 1.00450 1.20114 0.91791 0.90927 0.95526 0.88360 1.60121 1.39158 1.14870 1.16226 1.20552 0.93115 0.92942 0.88731 0.91383 1.20671 0.95694 1.10519 1.30616 0.93059 1.25702 1.02963 0.93737 0.93029 1.69966 1.36938 1.14751 1.32855 0.86239 0.79524 0.79298 0.81253 1.19254 1.20315 1.14770 1.21173 0.84120 0.82475 0.72132 1.93075 1.47880 1.87641 1.88405 1.93085 1.96289 1.91958 1.36088 1.93066 1.90999 1.57728 1.76164 1.23308 0.82459 0.82600 0.78681 1.90672 1.22080 1.79045 1.48397 1.84457 1.48683 1.31666 1.67880 1.21114 0.92821 0.96966 0.96498 0.81871 0.81325 0.84377 0.79758 0.91416 0.71402 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.34 18.54 19.00 0.35 -11.98 16 2 C 0.28 6.26 15.33 88.33 1.35 7.61 16 3 C -0.04 -0.80 5.73 -21.36 -0.12 -0.92 16 4 C -0.05 -0.71 9.76 22.54 0.22 -0.49 16 5 C -0.11 -1.64 10.03 22.23 0.22 -1.42 16 6 C -0.07 -1.50 8.74 22.33 0.20 -1.31 16 7 C -0.11 -2.77 4.74 -19.90 -0.09 -2.87 16 8 C 0.13 3.80 2.49 43.42 0.11 3.91 16 9 H 0.10 2.84 5.80 -2.39 -0.01 2.82 16 10 N -0.67 -23.95 5.38 -481.03 -2.59 -26.54 16 11 C 0.16 6.45 1.77 44.17 0.08 6.53 16 12 H 0.07 2.66 4.12 -2.39 -0.01 2.65 16 13 C -0.54 -26.57 8.28 25.60 0.21 -26.36 16 14 H 0.05 2.95 7.83 -2.91 -0.02 2.92 16 15 C 0.05 2.48 5.47 84.65 0.46 2.94 16 16 N -0.91 -49.39 13.96 21.45 0.30 -49.09 16 17 Si 0.91 35.99 27.15 68.60 1.86 37.85 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 19 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.22 -7.40 5.24 99.48 0.52 -6.88 16 21 C 0.46 19.41 2.82 71.98 0.20 19.61 16 22 F -0.19 -8.59 16.78 44.97 0.75 -7.83 16 23 F -0.19 -8.36 17.04 44.97 0.77 -7.59 16 24 F -0.20 -7.76 15.07 44.97 0.68 -7.08 16 25 C 0.49 14.58 5.88 71.24 0.42 15.00 16 26 O -0.52 -18.41 17.06 21.96 0.37 -18.03 16 27 O -0.51 -11.60 13.42 -51.32 -0.69 -12.28 16 28 C -0.05 -1.14 9.37 22.54 0.21 -0.92 16 29 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.14 3.21 7.50 -2.91 -0.02 3.19 16 32 H 0.38 13.41 6.59 -89.69 -0.59 12.82 16 33 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.42 5.91 9.10 -74.06 -0.67 5.24 16 35 H 0.14 2.77 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -64.84 327.66 5.04 -59.80 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.24 Total: 21.46 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 3.47 Total: 21.32 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -1.94 Total: -87.61 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.31 Total: -30.32 kcal Atomic # 9 Polarization: -24.70 SS G_CDS: 2.20 Total: -22.50 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 1.86 Total: 37.85 kcal Total: -64.84 5.04 -59.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.488 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds