Wall clock time and date at job start Tue Mar 31 2020 15:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39650 * 120.14826 * 116.44771 * 3 2 1 5 5 C 1.37929 * 119.84334 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.15390 * 359.97067 * 5 4 3 7 7 C 1.38340 * 120.30047 * 359.79282 * 6 5 4 8 8 C 1.50707 * 119.92315 * 180.23479 * 7 6 5 9 9 H 1.08999 * 109.47491 * 160.23324 * 8 7 6 10 10 N 1.46895 * 109.46979 * 40.23016 * 8 7 6 11 11 C 1.46902 * 110.99852 * 155.00562 * 10 8 7 12 12 H 1.08993 * 109.47407 * 34.99419 * 11 10 8 13 13 C 1.50701 * 109.47206 * 155.00007 * 11 10 8 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00178 * 179.97438 * 13 11 10 16 16 N 1.31514 * 119.99591 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00355 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.46945 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47425 * 120.00143 * 17 15 13 20 20 H 1.48498 * 109.47399 * 240.00524 * 17 15 13 21 21 C 1.52999 * 109.46778 * 274.99618 * 11 10 8 22 22 F 1.39905 * 109.46911 * 60.00176 * 21 11 10 23 23 F 1.39900 * 109.47167 * 180.02562 * 21 11 10 24 24 F 1.39900 * 109.47596 * 300.00353 * 21 11 10 25 25 C 1.50701 * 109.47114 * 280.23258 * 8 7 6 26 26 O 1.20826 * 120.00301 * 119.99471 * 25 8 7 27 27 O 1.34232 * 119.99730 * 300.00443 * 25 8 7 28 28 C 1.37965 * 120.15698 * 0.46822 * 7 6 5 29 29 H 1.07996 * 120.07902 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.92132 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.84762 * 180.02562 * 6 5 4 32 32 H 1.00895 * 111.00116 * 31.04696 * 10 8 7 33 33 H 0.97003 * 119.99998 * 179.97438 * 16 15 13 34 34 H 0.96701 * 116.99796 * 180.02562 * 27 25 8 35 35 H 1.08002 * 120.08297 * 179.79372 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.5388 -1.0812 5 6 4.6484 0.5366 -1.0744 6 6 5.3374 0.0034 0.0008 7 6 4.6491 -0.5269 1.0772 8 6 5.4080 -1.1006 2.2460 9 1 4.7551 -1.1429 3.1178 10 7 6.5670 -0.2484 2.5431 11 6 6.9757 -0.3864 3.9474 12 1 6.8173 -1.4145 4.2726 13 6 8.4351 -0.0358 4.0826 14 1 9.0025 0.2596 3.2123 15 6 9.0461 -0.0921 5.3173 16 7 8.3551 -0.4512 6.3771 17 14 10.8552 0.3418 5.4849 18 1 11.4010 0.7111 4.1540 19 1 11.0051 1.4886 6.4164 20 1 11.5978 -0.8288 6.0174 21 6 6.1419 0.5575 4.8162 22 9 4.7870 0.2320 4.6907 23 9 6.5314 0.4266 6.1535 24 9 6.3450 1.8772 4.3989 25 6 5.8807 -2.4903 1.9047 26 8 7.0619 -2.7446 1.9084 27 8 4.9895 -3.4455 1.5962 28 6 3.2695 -0.5361 1.0812 29 1 2.7327 0.9557 -1.9207 30 1 5.1919 0.9521 -1.9101 31 1 6.4174 0.0046 0.0011 32 1 6.3748 0.7156 2.3155 33 1 8.7850 -0.4912 7.2458 34 1 5.3403 -4.3214 1.3847 35 1 2.7333 -0.9534 1.9208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:50 Heat of formation + Delta-G solvation = -158.727488 kcal Electronic energy + Delta-G solvation = -28536.800561 eV Core-core repulsion = 23893.134398 eV Total energy + Delta-G solvation = -4643.666163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.65844 -46.33674 -45.78282 -40.38865 -39.26630 -36.80808 -36.14540 -35.37116 -33.25176 -31.53234 -31.44936 -28.36772 -25.92893 -24.51069 -23.96245 -22.78664 -21.28352 -20.71215 -18.90613 -17.60758 -17.35636 -16.96567 -16.88408 -16.48767 -16.17239 -16.05656 -15.44595 -15.19346 -14.75060 -14.39668 -14.19489 -14.03592 -13.56840 -13.26600 -13.25692 -13.00210 -12.97902 -12.73545 -12.71513 -12.47243 -12.32088 -12.21438 -12.09796 -11.96982 -11.67284 -11.36115 -11.09215 -11.02546 -10.74925 -10.66822 -10.33487 -10.11452 -9.64694 -9.13070 -8.97804 -8.60639 -8.01433 -6.16930 -4.33001 0.61597 1.06834 2.48733 2.60183 2.78368 3.19043 3.23827 3.31644 3.37158 3.67456 3.73324 4.23734 4.26195 4.44048 4.60551 4.76185 4.87427 4.92520 5.12221 5.26378 5.33343 5.54563 5.59078 5.63633 5.68463 5.74464 5.99544 6.03716 6.16607 6.30156 6.55462 6.59990 6.79098 7.28785 7.32332 7.73834 7.76709 7.90314 8.29344 8.73106 9.31688 10.76105 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.004210 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.763270 B = 6649.177729 C = 7073.892474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.261 3.739 3 C -0.037 4.037 4 C -0.066 4.066 5 C -0.122 4.122 6 C -0.063 4.063 7 C -0.088 4.088 8 C 0.127 3.873 9 H 0.101 0.899 10 N -0.646 5.646 11 C 0.194 3.806 12 H 0.073 0.927 13 C -0.506 4.506 14 H 0.082 0.918 15 C 0.056 3.944 16 N -0.853 5.853 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.392 3.608 22 F -0.234 7.234 23 F -0.133 7.133 24 F -0.206 7.206 25 C 0.477 3.523 26 O -0.470 6.470 27 O -0.524 6.524 28 C -0.045 4.045 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.353 0.647 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -0.590 -11.300 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.055 4.055 3 C -0.040 4.040 4 C -0.087 4.087 5 C -0.140 4.140 6 C -0.082 4.082 7 C -0.089 4.089 8 C 0.015 3.985 9 H 0.119 0.881 10 N -0.279 5.279 11 C 0.083 3.917 12 H 0.091 0.909 13 C -0.544 4.544 14 H 0.100 0.900 15 C -0.151 4.151 16 N -0.488 5.488 17 Si 0.741 3.259 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.335 3.665 22 F -0.216 7.216 23 F -0.114 7.114 24 F -0.187 7.187 25 C 0.315 3.685 26 O -0.353 6.353 27 O -0.336 6.336 28 C -0.066 4.066 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.075 0.925 34 H 0.263 0.737 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.730 -0.737 -11.199 13.627 hybrid contribution 0.646 0.285 0.831 1.090 sum -7.084 -0.451 -10.368 12.565 Atomic orbital electron populations 1.81241 1.12084 1.08841 1.07734 1.25686 0.92621 0.93521 0.93636 1.15880 0.84232 1.06249 0.97637 1.21200 0.94493 0.96529 0.96475 1.21110 0.93423 1.00374 0.99062 1.21520 1.01818 0.93350 0.91506 1.19464 0.92816 1.00759 0.95861 1.20048 0.92813 0.88777 0.96840 0.88120 1.60299 1.32107 1.11732 1.23771 1.20516 0.95765 0.95084 0.80285 0.90936 1.20764 0.91278 1.47430 0.94895 0.89971 1.25144 0.99469 0.94957 0.95508 1.70366 1.34876 1.43999 0.99592 0.86170 0.83368 0.77956 0.78415 1.19285 1.20894 1.20793 1.24379 0.76254 0.81588 0.84279 1.92970 1.39837 1.92603 1.96191 1.93442 1.88603 1.95114 1.34200 1.93000 1.94831 1.40391 1.90521 1.23223 0.84386 0.86944 0.73900 1.90776 1.17938 1.81229 1.45340 1.84515 1.43727 1.23751 1.81600 1.21072 0.93292 0.95381 0.96811 0.85029 0.84580 0.83652 0.82527 0.92541 0.73674 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.26 3.04 15.33 -22.47 -0.34 2.70 16 3 C -0.04 -0.37 5.73 -106.93 -0.61 -0.99 16 4 C -0.07 -0.56 9.76 -39.17 -0.38 -0.94 16 5 C -0.12 -1.03 10.03 -39.64 -0.40 -1.42 16 6 C -0.06 -0.69 9.00 -39.49 -0.36 -1.04 16 7 C -0.09 -1.10 4.63 -104.68 -0.48 -1.58 16 8 C 0.13 1.98 2.36 -70.01 -0.16 1.82 16 9 H 0.10 1.62 5.71 -51.93 -0.30 1.33 16 10 N -0.65 -11.96 4.95 -103.40 -0.51 -12.47 16 11 C 0.19 4.43 1.96 -68.86 -0.13 4.30 16 12 H 0.07 1.82 7.63 -51.93 -0.40 1.42 16 13 C -0.51 -12.91 8.58 -34.44 -0.30 -13.20 16 14 H 0.08 2.10 7.81 -52.48 -0.41 1.69 16 15 C 0.06 1.44 5.20 -17.82 -0.09 1.35 16 16 N -0.85 -23.00 9.50 55.43 0.53 -22.47 16 17 Si 0.91 20.51 29.54 -169.99 -5.02 15.48 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.39 8.98 2.74 37.16 0.10 9.09 16 22 F -0.23 -4.79 15.05 2.25 0.03 -4.76 16 23 F -0.13 -3.44 12.91 2.25 0.03 -3.41 16 24 F -0.21 -4.63 16.31 2.25 0.04 -4.59 16 25 C 0.48 7.68 7.35 36.01 0.26 7.94 16 26 O -0.47 -9.34 17.02 -18.75 -0.32 -9.66 16 27 O -0.52 -6.42 13.34 -39.26 -0.52 -6.95 16 28 C -0.04 -0.50 9.37 -39.17 -0.37 -0.87 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.15 1.67 7.71 -52.49 -0.40 1.26 16 32 H 0.35 6.11 7.15 -39.29 -0.28 5.83 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.41 3.27 9.10 45.56 0.41 3.68 16 35 H 0.14 1.43 8.03 -52.49 -0.42 1.01 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -30.64 328.10 -5.07 -35.71 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -1.78 Total: 6.08 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -3.27 Total: 7.15 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.79 Total: -39.99 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.84 Total: -16.61 kcal Atomic # 9 Polarization: -12.87 SS G_CDS: 0.10 Total: -12.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.64 -5.07 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.013 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds