Wall clock time and date at job start Tue Mar 31 2020 15:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39650 * 120.14826 * 116.44771 * 3 2 1 5 5 C 1.37929 * 119.84334 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.15390 * 359.97067 * 5 4 3 7 7 C 1.38340 * 120.30047 * 359.79282 * 6 5 4 8 8 C 1.50707 * 119.92315 * 180.23479 * 7 6 5 9 9 H 1.08999 * 109.47491 * 160.23324 * 8 7 6 10 10 N 1.46895 * 109.46979 * 40.23016 * 8 7 6 11 11 C 1.46902 * 110.99852 * 155.00562 * 10 8 7 12 12 H 1.08993 * 109.47407 * 34.99419 * 11 10 8 13 13 C 1.50701 * 109.47206 * 155.00007 * 11 10 8 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00178 * 179.97438 * 13 11 10 16 16 N 1.31514 * 119.99591 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00355 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.46945 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47425 * 120.00143 * 17 15 13 20 20 H 1.48498 * 109.47399 * 240.00524 * 17 15 13 21 21 C 1.52999 * 109.46778 * 274.99618 * 11 10 8 22 22 F 1.39905 * 109.46911 * 60.00176 * 21 11 10 23 23 F 1.39900 * 109.47167 * 180.02562 * 21 11 10 24 24 F 1.39900 * 109.47596 * 300.00353 * 21 11 10 25 25 C 1.50701 * 109.47114 * 280.23258 * 8 7 6 26 26 O 1.20826 * 120.00301 * 119.99471 * 25 8 7 27 27 O 1.34232 * 119.99730 * 300.00443 * 25 8 7 28 28 C 1.37965 * 120.15698 * 0.46822 * 7 6 5 29 29 H 1.07996 * 120.07902 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.92132 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.84762 * 180.02562 * 6 5 4 32 32 H 1.00895 * 111.00116 * 31.04696 * 10 8 7 33 33 H 0.97003 * 119.99998 * 179.97438 * 16 15 13 34 34 H 0.96701 * 116.99796 * 180.02562 * 27 25 8 35 35 H 1.08002 * 120.08297 * 179.79372 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.5388 -1.0812 5 6 4.6484 0.5366 -1.0744 6 6 5.3374 0.0034 0.0008 7 6 4.6491 -0.5269 1.0772 8 6 5.4080 -1.1006 2.2460 9 1 4.7551 -1.1429 3.1178 10 7 6.5670 -0.2484 2.5431 11 6 6.9757 -0.3864 3.9474 12 1 6.8173 -1.4145 4.2726 13 6 8.4351 -0.0358 4.0826 14 1 9.0025 0.2596 3.2123 15 6 9.0461 -0.0921 5.3173 16 7 8.3551 -0.4512 6.3771 17 14 10.8552 0.3418 5.4849 18 1 11.4010 0.7111 4.1540 19 1 11.0051 1.4886 6.4164 20 1 11.5978 -0.8288 6.0174 21 6 6.1419 0.5575 4.8162 22 9 4.7870 0.2320 4.6907 23 9 6.5314 0.4266 6.1535 24 9 6.3450 1.8772 4.3989 25 6 5.8807 -2.4903 1.9047 26 8 7.0619 -2.7446 1.9084 27 8 4.9895 -3.4455 1.5962 28 6 3.2695 -0.5361 1.0812 29 1 2.7327 0.9557 -1.9207 30 1 5.1919 0.9521 -1.9101 31 1 6.4174 0.0046 0.0011 32 1 6.3748 0.7156 2.3155 33 1 8.7850 -0.4912 7.2458 34 1 5.3403 -4.3214 1.3847 35 1 2.7333 -0.9534 1.9208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:49 Heat of formation + Delta-G solvation = -178.210816 kcal Electronic energy + Delta-G solvation = -28537.645421 eV Core-core repulsion = 23893.134398 eV Total energy + Delta-G solvation = -4644.511023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.50180 -48.14288 -47.72111 -41.53029 -40.25659 -37.96666 -37.32189 -36.70707 -34.92639 -32.87975 -32.27748 -29.78094 -27.36249 -26.39186 -24.86829 -23.84564 -22.79959 -21.98214 -19.98954 -19.25692 -18.79359 -18.75331 -18.56036 -17.88146 -17.37983 -17.15480 -16.78430 -16.46576 -16.35006 -15.65804 -15.27132 -15.07372 -14.98614 -14.95749 -14.55911 -14.45803 -14.38206 -14.17830 -14.07901 -14.01247 -13.95628 -13.77131 -13.60908 -13.22641 -12.92475 -12.66160 -12.53524 -12.38707 -12.35161 -12.12737 -12.02058 -11.60726 -11.41881 -10.57830 -9.92809 -9.86586 -9.55399 -8.13078 -6.34621 -0.21018 0.26256 1.31712 1.45901 1.48362 1.59755 1.60895 1.87432 2.05667 2.39773 2.41970 2.78811 2.87117 2.98908 3.23188 3.45963 3.69155 3.78814 3.91311 4.11358 4.13332 4.25009 4.31356 4.43661 4.51808 4.73071 4.79729 4.95247 5.26680 5.39051 5.43521 5.61210 5.70413 5.77137 5.83622 6.09365 6.30011 6.42749 6.73308 7.14489 7.33188 8.79446 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.004210 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.763270 B = 6649.177729 C = 7073.892474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.282 3.718 3 C -0.040 4.040 4 C -0.048 4.048 5 C -0.109 4.109 6 C -0.068 4.068 7 C -0.103 4.103 8 C 0.126 3.874 9 H 0.095 0.905 10 N -0.643 5.643 11 C 0.202 3.798 12 H 0.046 0.954 13 C -0.521 4.521 14 H 0.077 0.923 15 C 0.010 3.990 16 N -0.880 5.880 17 Si 0.970 3.030 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.395 3.605 22 F -0.219 7.219 23 F -0.152 7.152 24 F -0.202 7.202 25 C 0.485 3.515 26 O -0.516 6.516 27 O -0.509 6.509 28 C -0.046 4.046 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.137 0.863 32 H 0.359 0.641 33 H 0.263 0.737 34 H 0.426 0.574 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 0.111 -13.374 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.032 4.032 3 C -0.044 4.044 4 C -0.068 4.068 5 C -0.126 4.126 6 C -0.087 4.087 7 C -0.104 4.104 8 C 0.015 3.985 9 H 0.112 0.888 10 N -0.277 5.277 11 C 0.091 3.909 12 H 0.064 0.936 13 C -0.558 4.558 14 H 0.095 0.905 15 C -0.193 4.193 16 N -0.516 5.516 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.338 3.662 22 F -0.201 7.201 23 F -0.133 7.133 24 F -0.184 7.184 25 C 0.325 3.675 26 O -0.402 6.402 27 O -0.323 6.323 28 C -0.068 4.068 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.155 0.845 32 H 0.182 0.818 33 H 0.073 0.927 34 H 0.287 0.713 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.042 -0.052 -13.300 15.543 hybrid contribution 0.638 0.021 1.381 1.522 sum -7.403 -0.031 -11.919 14.031 Atomic orbital electron populations 1.81270 1.13256 1.10347 1.09066 1.25798 0.92646 0.92314 0.92443 1.15890 0.83382 1.06971 0.98150 1.21561 0.94520 0.94487 0.96275 1.21407 0.93454 0.98937 0.98832 1.21570 1.01613 0.93556 0.91929 1.19185 0.93004 1.02755 0.95451 1.20021 0.91786 0.88518 0.98192 0.88806 1.60143 1.34105 1.12608 1.20801 1.20171 0.94927 0.93353 0.82450 0.93618 1.21015 0.92743 1.47293 0.94733 0.90475 1.25885 1.03077 0.94965 0.95374 1.70484 1.36205 1.45064 0.99841 0.85295 0.79087 0.77600 0.78463 1.18624 1.20687 1.20658 1.24175 0.76949 0.81731 0.83383 1.92989 1.38563 1.92502 1.96064 1.93398 1.89010 1.95251 1.35625 1.92997 1.94903 1.40118 1.90389 1.23281 0.83914 0.87556 0.72745 1.90761 1.19745 1.82042 1.47697 1.84460 1.42546 1.24541 1.80708 1.21031 0.92785 0.95582 0.97357 0.81964 0.81307 0.84466 0.81825 0.92675 0.71308 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.16 18.54 19.00 0.35 -11.81 16 2 C 0.28 6.03 15.33 88.33 1.35 7.39 16 3 C -0.04 -0.72 5.73 -21.36 -0.12 -0.84 16 4 C -0.05 -0.61 9.76 22.54 0.22 -0.39 16 5 C -0.11 -1.41 10.03 22.23 0.22 -1.18 16 6 C -0.07 -1.33 9.00 22.33 0.20 -1.13 16 7 C -0.10 -2.43 4.63 -19.90 -0.09 -2.52 16 8 C 0.13 3.92 2.36 43.43 0.10 4.03 16 9 H 0.09 3.04 5.71 -2.39 -0.01 3.03 16 10 N -0.64 -23.94 4.95 -481.04 -2.38 -26.32 16 11 C 0.20 9.43 1.96 44.17 0.09 9.51 16 12 H 0.05 2.38 7.63 -2.39 -0.02 2.36 16 13 C -0.52 -26.87 8.58 25.60 0.22 -26.65 16 14 H 0.08 3.97 7.81 -2.91 -0.02 3.95 16 15 C 0.01 0.54 5.20 84.65 0.44 0.98 16 16 N -0.88 -48.25 9.50 21.45 0.20 -48.05 16 17 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.39 18.24 2.74 71.98 0.20 18.44 16 22 F -0.22 -8.97 15.05 44.97 0.68 -8.30 16 23 F -0.15 -8.01 12.91 44.97 0.58 -7.43 16 24 F -0.20 -9.06 16.31 44.97 0.73 -8.33 16 25 C 0.48 15.56 7.35 71.24 0.52 16.08 16 26 O -0.52 -20.82 17.02 21.96 0.37 -20.45 16 27 O -0.51 -11.92 13.34 -51.44 -0.69 -12.60 16 28 C -0.05 -0.96 9.37 22.54 0.21 -0.75 16 29 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.14 2.95 7.71 -2.91 -0.02 2.93 16 32 H 0.36 12.34 7.15 -89.70 -0.64 11.70 16 33 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 34 H 0.43 6.25 9.10 -74.06 -0.67 5.58 16 35 H 0.14 2.74 8.03 -2.91 -0.02 2.72 16 Total: -1.00 -66.88 328.10 5.33 -61.55 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -0.11 Total: 14.56 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 3.56 Total: 22.97 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.83 Total: -86.18 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.31 Total: -33.05 kcal Atomic # 9 Polarization: -26.05 SS G_CDS: 1.99 Total: -24.06 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.88 5.33 -61.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.658 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds