Wall clock time and date at job start Tue Mar 31 2020 15:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39651 * 120.14944 * 217.76446 * 3 2 1 5 5 C 1.37922 * 119.84493 * 179.97438 * 4 3 2 6 6 C 1.38393 * 120.15372 * 359.74383 * 5 4 3 7 7 C 1.38342 * 120.30084 * 0.51128 * 6 5 4 8 8 C 1.50701 * 119.92176 * 179.76247 * 7 6 5 9 9 H 1.09002 * 109.46973 * 199.72338 * 8 7 6 10 10 N 1.46896 * 109.47134 * 319.72964 * 8 7 6 11 11 C 1.46901 * 110.99368 * 227.89500 * 10 8 7 12 12 H 1.08998 * 109.47709 * 28.60796 * 11 10 8 13 13 C 1.50707 * 109.46814 * 148.60694 * 11 10 8 14 14 H 1.07998 * 120.00341 * 94.84314 * 13 11 10 15 15 C 1.37874 * 119.99691 * 275.11198 * 13 11 10 16 16 N 1.31516 * 120.00111 * 185.49762 * 15 13 11 17 17 Si 1.86802 * 120.00341 * 5.49780 * 15 13 11 18 18 H 1.48500 * 109.47015 * 84.64983 * 17 15 13 19 19 H 1.48492 * 109.47375 * 204.65207 * 17 15 13 20 20 H 1.48507 * 109.46887 * 324.65234 * 17 15 13 21 21 C 1.53003 * 109.47309 * 268.60211 * 11 10 8 22 22 F 1.39900 * 109.46918 * 302.60476 * 21 11 10 23 23 F 1.39899 * 109.46819 * 62.60656 * 21 11 10 24 24 F 1.39895 * 109.47019 * 182.60389 * 21 11 10 25 25 C 1.50698 * 109.46603 * 79.72753 * 8 7 6 26 26 O 1.20827 * 120.00065 * 263.96485 * 25 8 7 27 27 O 1.34237 * 120.00293 * 83.97268 * 25 8 7 28 28 C 1.37973 * 120.15280 * 359.49035 * 7 6 5 29 29 H 1.07995 * 120.07438 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.92793 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.84923 * 180.27797 * 6 5 4 32 32 H 1.00897 * 111.00161 * 351.84327 * 10 8 7 33 33 H 0.96997 * 120.00332 * 180.02562 * 16 15 13 34 34 H 0.96694 * 116.99913 * 179.97438 * 27 25 8 35 35 H 1.07994 * 120.07371 * 180.27366 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.9556 0.7395 5 6 4.6482 0.9501 0.7355 6 6 5.3374 -0.0021 0.0050 7 6 4.6493 -0.9477 -0.7340 8 6 5.4085 -1.9774 -1.5305 9 1 4.7573 -2.3953 -2.2983 10 7 6.5718 -1.3445 -2.1662 11 6 6.6576 -1.7078 -3.5870 12 1 5.6578 -1.9092 -3.9717 13 6 7.2734 -0.5700 -4.3601 14 1 8.3346 -0.5651 -4.5603 15 6 6.4827 0.4674 -4.8069 16 7 6.9980 1.4042 -5.5726 17 14 4.6796 0.5423 -4.3246 18 1 4.5491 1.1936 -2.9964 19 1 3.9286 1.3274 -5.3368 20 1 4.1277 -0.8347 -4.2571 21 6 7.5253 -2.9584 -3.7423 22 9 8.7904 -2.7190 -3.1950 23 9 6.9231 -4.0297 -3.0739 24 9 7.6558 -3.2698 -5.0999 25 6 5.8744 -3.0785 -0.6133 26 8 6.9933 -3.0524 -0.1578 27 8 5.0466 -4.0884 -0.3023 28 6 3.2696 -0.9538 -0.7389 29 1 2.7323 1.6966 1.3133 30 1 5.1917 1.6878 1.3073 31 1 6.4174 -0.0046 0.0090 32 1 6.5468 -0.3426 -2.0501 33 1 6.4419 2.1343 -5.8867 34 1 5.3904 -4.7715 0.2894 35 1 2.7337 -1.6953 -1.3127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:52 Heat of formation + Delta-G solvation = -180.551155 kcal Electronic energy + Delta-G solvation = -28803.347840 eV Core-core repulsion = 24158.735332 eV Total energy + Delta-G solvation = -4644.612508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.06986 -46.66832 -46.45484 -40.48054 -39.30364 -36.95224 -36.20617 -35.59004 -33.27337 -31.71750 -31.51699 -28.82234 -26.11475 -25.03110 -24.03066 -22.83702 -21.17196 -20.80317 -18.81761 -18.23339 -17.65961 -17.53769 -16.80132 -16.50850 -16.47119 -16.05378 -15.78544 -15.51521 -14.87849 -14.32404 -14.21275 -14.01831 -13.77752 -13.55827 -13.34782 -13.30002 -13.10593 -13.02859 -12.96006 -12.77398 -12.70130 -12.64922 -12.61254 -12.35155 -11.84975 -11.65427 -11.33264 -11.22371 -11.07780 -10.62770 -10.33188 -10.29922 -9.82047 -9.17185 -9.09003 -9.02151 -8.24633 -6.54618 -4.65053 0.57013 1.00875 2.44569 2.53859 2.73520 2.92374 2.95989 3.06903 3.14630 3.61595 3.70596 3.81144 3.95011 4.34052 4.42295 4.63430 4.80682 4.84248 5.03840 5.10179 5.14679 5.25428 5.28737 5.48279 5.54456 5.55429 5.68351 5.98511 6.01777 6.12533 6.23589 6.55369 6.73530 6.79061 7.26532 7.28568 7.71214 7.99906 8.22204 8.55204 8.97503 10.55452 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.006074 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.098472 B = 4608.330135 C = 5925.237644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.260 3.740 3 C -0.036 4.036 4 C -0.065 4.065 5 C -0.117 4.117 6 C -0.065 4.065 7 C -0.102 4.102 8 C 0.127 3.873 9 H 0.098 0.902 10 N -0.662 5.662 11 C 0.142 3.858 12 H 0.061 0.939 13 C -0.527 4.527 14 H 0.095 0.905 15 C 0.093 3.907 16 N -0.862 5.862 17 Si 0.849 3.151 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.260 1.260 21 C 0.462 3.538 22 F -0.177 7.177 23 F -0.209 7.209 24 F -0.186 7.186 25 C 0.486 3.514 26 O -0.483 6.483 27 O -0.522 6.522 28 C -0.052 4.052 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.370 0.630 33 H 0.274 0.726 34 H 0.404 0.596 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 -3.421 10.975 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.055 4.055 3 C -0.039 4.039 4 C -0.085 4.085 5 C -0.135 4.135 6 C -0.084 4.084 7 C -0.103 4.103 8 C 0.015 3.985 9 H 0.115 0.885 10 N -0.302 5.302 11 C 0.034 3.966 12 H 0.078 0.922 13 C -0.565 4.565 14 H 0.113 0.887 15 C -0.116 4.116 16 N -0.496 5.496 17 Si 0.674 3.326 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.185 1.185 21 C 0.407 3.593 22 F -0.158 7.158 23 F -0.191 7.191 24 F -0.167 7.167 25 C 0.325 3.675 26 O -0.367 6.367 27 O -0.334 6.334 28 C -0.073 4.073 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.198 0.802 33 H 0.085 0.915 34 H 0.263 0.737 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.611 -3.401 10.914 13.206 hybrid contribution -0.791 -0.070 0.100 0.800 sum -7.401 -3.471 11.015 13.717 Atomic orbital electron populations 1.81241 1.11975 1.07971 1.08414 1.25651 0.92573 0.93677 0.93629 1.15893 0.84342 1.00137 1.03577 1.21235 0.94521 0.96353 0.96402 1.21131 0.93457 0.99083 0.99822 1.21519 1.01883 0.92319 0.92648 1.19683 0.93121 0.97608 0.99876 1.20099 0.92972 0.90670 0.94752 0.88483 1.60532 1.37655 1.16373 1.15688 1.20896 0.96022 0.92661 0.87038 0.92216 1.20704 0.97990 1.03609 1.34213 0.88676 1.24942 0.98104 0.95096 0.93408 1.69835 1.37014 1.11930 1.30823 0.87314 0.85507 0.79459 0.80323 1.18211 1.20180 1.18526 1.20878 0.80634 0.85159 0.72643 1.93112 1.42648 1.94357 1.85689 1.93051 1.83716 1.61046 1.81295 1.93108 1.96158 1.93863 1.33585 1.23298 0.83159 0.81473 0.79569 1.90683 1.20271 1.76030 1.49727 1.84520 1.48420 1.35370 1.65101 1.21103 0.93296 0.96664 0.96281 0.84763 0.84243 0.83476 0.80209 0.91535 0.73747 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.05 18.54 41.84 0.78 -5.27 16 2 C 0.26 3.25 15.33 -22.47 -0.34 2.91 16 3 C -0.04 -0.41 5.73 -106.93 -0.61 -1.03 16 4 C -0.06 -0.62 9.76 -39.17 -0.38 -1.01 16 5 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 6 C -0.06 -0.80 8.71 -39.49 -0.34 -1.15 16 7 C -0.10 -1.39 4.77 -104.68 -0.50 -1.89 16 8 C 0.13 2.02 2.44 -70.02 -0.17 1.85 16 9 H 0.10 1.51 6.92 -51.93 -0.36 1.15 16 10 N -0.66 -12.40 5.18 -103.39 -0.54 -12.94 16 11 C 0.14 2.99 1.44 -68.86 -0.10 2.89 16 12 H 0.06 1.24 4.82 -51.93 -0.25 0.99 16 13 C -0.53 -12.96 8.32 -34.44 -0.29 -13.24 16 14 H 0.10 2.64 7.92 -52.49 -0.42 2.22 16 15 C 0.09 2.30 5.47 -17.82 -0.10 2.21 16 16 N -0.86 -23.06 13.96 55.43 0.77 -22.29 16 17 Si 0.85 17.70 26.67 -169.99 -4.53 13.17 16 18 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.26 -5.10 6.14 56.52 0.35 -4.75 16 21 C 0.46 9.83 2.82 37.16 0.10 9.94 16 22 F -0.18 -3.97 16.86 2.25 0.04 -3.93 16 23 F -0.21 -4.13 15.32 2.25 0.03 -4.09 16 24 F -0.19 -4.03 16.96 2.25 0.04 -3.99 16 25 C 0.49 7.70 6.05 36.00 0.22 7.92 16 26 O -0.48 -8.95 17.36 -18.75 -0.33 -9.28 16 27 O -0.52 -6.54 13.42 -39.28 -0.53 -7.06 16 28 C -0.05 -0.65 9.37 -39.17 -0.37 -1.01 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.15 1.85 7.41 -52.49 -0.39 1.46 16 32 H 0.37 6.86 5.63 -39.29 -0.22 6.63 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.40 3.32 9.10 45.56 0.41 3.74 16 35 H 0.14 1.52 8.03 -52.49 -0.42 1.10 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -29.64 329.14 -4.26 -33.90 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -1.68 Total: 10.00 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -3.28 Total: 6.84 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.01 Total: -40.50 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.85 Total: -16.34 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 0.11 Total: -12.02 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.53 Total: 13.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.64 -4.26 -33.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.656 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds