Wall clock time and date at job start Tue Mar 31 2020 15:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39651 * 120.14944 * 217.76446 * 3 2 1 5 5 C 1.37922 * 119.84493 * 179.97438 * 4 3 2 6 6 C 1.38393 * 120.15372 * 359.74383 * 5 4 3 7 7 C 1.38342 * 120.30084 * 0.51128 * 6 5 4 8 8 C 1.50701 * 119.92176 * 179.76247 * 7 6 5 9 9 H 1.09002 * 109.46973 * 199.72338 * 8 7 6 10 10 N 1.46896 * 109.47134 * 319.72964 * 8 7 6 11 11 C 1.46901 * 110.99368 * 227.89500 * 10 8 7 12 12 H 1.08998 * 109.47709 * 28.60796 * 11 10 8 13 13 C 1.50707 * 109.46814 * 148.60694 * 11 10 8 14 14 H 1.07998 * 120.00341 * 94.84314 * 13 11 10 15 15 C 1.37874 * 119.99691 * 275.11198 * 13 11 10 16 16 N 1.31516 * 120.00111 * 185.49762 * 15 13 11 17 17 Si 1.86802 * 120.00341 * 5.49780 * 15 13 11 18 18 H 1.48500 * 109.47015 * 84.64983 * 17 15 13 19 19 H 1.48492 * 109.47375 * 204.65207 * 17 15 13 20 20 H 1.48507 * 109.46887 * 324.65234 * 17 15 13 21 21 C 1.53003 * 109.47309 * 268.60211 * 11 10 8 22 22 F 1.39900 * 109.46918 * 302.60476 * 21 11 10 23 23 F 1.39899 * 109.46819 * 62.60656 * 21 11 10 24 24 F 1.39895 * 109.47019 * 182.60389 * 21 11 10 25 25 C 1.50698 * 109.46603 * 79.72753 * 8 7 6 26 26 O 1.20827 * 120.00065 * 263.96485 * 25 8 7 27 27 O 1.34237 * 120.00293 * 83.97268 * 25 8 7 28 28 C 1.37973 * 120.15280 * 359.49035 * 7 6 5 29 29 H 1.07995 * 120.07438 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.92793 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.84923 * 180.27797 * 6 5 4 32 32 H 1.00897 * 111.00161 * 351.84327 * 10 8 7 33 33 H 0.96997 * 120.00332 * 180.02562 * 16 15 13 34 34 H 0.96694 * 116.99913 * 179.97438 * 27 25 8 35 35 H 1.07994 * 120.07371 * 180.27366 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.9556 0.7395 5 6 4.6482 0.9501 0.7355 6 6 5.3374 -0.0021 0.0050 7 6 4.6493 -0.9477 -0.7340 8 6 5.4085 -1.9774 -1.5305 9 1 4.7573 -2.3953 -2.2983 10 7 6.5718 -1.3445 -2.1662 11 6 6.6576 -1.7078 -3.5870 12 1 5.6578 -1.9092 -3.9717 13 6 7.2734 -0.5700 -4.3601 14 1 8.3346 -0.5651 -4.5603 15 6 6.4827 0.4674 -4.8069 16 7 6.9980 1.4042 -5.5726 17 14 4.6796 0.5423 -4.3246 18 1 4.5491 1.1936 -2.9964 19 1 3.9286 1.3274 -5.3368 20 1 4.1277 -0.8347 -4.2571 21 6 7.5253 -2.9584 -3.7423 22 9 8.7904 -2.7190 -3.1950 23 9 6.9231 -4.0297 -3.0739 24 9 7.6558 -3.2698 -5.0999 25 6 5.8744 -3.0785 -0.6133 26 8 6.9933 -3.0524 -0.1578 27 8 5.0466 -4.0884 -0.3023 28 6 3.2696 -0.9538 -0.7389 29 1 2.7323 1.6966 1.3133 30 1 5.1917 1.6878 1.3073 31 1 6.4174 -0.0046 0.0090 32 1 6.5468 -0.3426 -2.0501 33 1 6.4419 2.1343 -5.8867 34 1 5.3904 -4.7715 0.2894 35 1 2.7337 -1.6953 -1.3127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:52 Heat of formation + Delta-G solvation = -200.074921 kcal Electronic energy + Delta-G solvation = -28804.194454 eV Core-core repulsion = 24158.735332 eV Total energy + Delta-G solvation = -4645.459122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.79493 -48.36263 -48.22861 -41.58793 -40.31068 -38.16617 -37.36238 -36.83066 -34.88744 -33.13411 -32.38077 -30.16739 -27.43710 -26.87077 -24.96997 -23.82629 -22.70702 -22.01536 -20.05309 -19.74322 -19.25098 -18.87490 -18.45351 -18.15546 -17.50179 -17.34539 -16.90367 -16.55493 -16.36409 -15.47809 -15.43637 -15.24704 -15.16331 -15.06572 -14.87360 -14.74306 -14.66921 -14.47790 -14.42849 -14.26019 -14.19629 -13.91931 -13.84142 -13.46346 -13.21323 -12.80326 -12.59262 -12.40783 -12.28168 -12.11525 -11.97190 -11.77339 -11.55106 -10.93826 -10.02739 -9.96427 -9.70894 -8.44516 -6.61412 -0.30820 0.15117 1.29658 1.30519 1.32314 1.39632 1.53233 1.79533 1.96937 2.13533 2.20131 2.66380 2.76703 2.86136 3.07985 3.38100 3.43441 3.47814 3.72685 3.90228 4.05459 4.11759 4.18738 4.25379 4.40873 4.52005 4.65145 4.86604 4.99888 5.16496 5.28360 5.34609 5.67128 5.74326 5.76620 6.00946 6.32410 6.36064 6.52732 7.05436 7.13322 8.69287 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.006074 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.098472 B = 4608.330135 C = 5925.237644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.281 3.719 3 C -0.041 4.041 4 C -0.050 4.050 5 C -0.109 4.109 6 C -0.076 4.076 7 C -0.120 4.120 8 C 0.123 3.877 9 H 0.104 0.896 10 N -0.667 5.667 11 C 0.152 3.848 12 H 0.071 0.929 13 C -0.533 4.533 14 H 0.049 0.951 15 C 0.048 3.952 16 N -0.913 5.913 17 Si 0.902 3.098 18 H -0.230 1.230 19 H -0.286 1.286 20 H -0.238 1.238 21 C 0.459 3.541 22 F -0.187 7.187 23 F -0.197 7.197 24 F -0.191 7.191 25 C 0.492 3.508 26 O -0.517 6.517 27 O -0.512 6.512 28 C -0.055 4.055 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.139 0.861 32 H 0.372 0.628 33 H 0.276 0.724 34 H 0.425 0.575 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 -3.382 12.984 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.033 4.033 3 C -0.045 4.045 4 C -0.070 4.070 5 C -0.127 4.127 6 C -0.095 4.095 7 C -0.121 4.121 8 C 0.012 3.988 9 H 0.122 0.878 10 N -0.306 5.306 11 C 0.043 3.957 12 H 0.088 0.912 13 C -0.571 4.571 14 H 0.067 0.933 15 C -0.156 4.156 16 N -0.549 5.549 17 Si 0.723 3.277 18 H -0.152 1.152 19 H -0.212 1.212 20 H -0.161 1.161 21 C 0.404 3.596 22 F -0.168 7.168 23 F -0.179 7.179 24 F -0.172 7.172 25 C 0.333 3.667 26 O -0.404 6.404 27 O -0.325 6.325 28 C -0.076 4.076 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.156 0.844 32 H 0.199 0.801 33 H 0.086 0.914 34 H 0.286 0.714 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.809 -3.406 12.957 16.033 hybrid contribution -0.039 -0.152 -0.459 0.485 sum -8.848 -3.558 12.498 15.720 Atomic orbital electron populations 1.81275 1.13045 1.09235 1.09736 1.25707 0.92522 0.92571 0.92520 1.15938 0.83645 1.00697 1.04204 1.21610 0.94484 0.95799 0.95082 1.21445 0.93641 0.98640 0.98953 1.21618 1.01754 0.92940 0.93153 1.19505 0.93509 0.97927 1.01168 1.20123 0.91947 0.91469 0.95295 0.87800 1.60207 1.39794 1.16704 1.13881 1.20689 0.95892 0.91057 0.88091 0.91157 1.20628 0.96084 1.05166 1.35246 0.93293 1.25678 1.02715 0.94286 0.92890 1.69973 1.39064 1.13089 1.32735 0.86455 0.79539 0.80763 0.80950 1.15246 1.21193 1.16131 1.20985 0.80399 0.85745 0.72465 1.93090 1.43437 1.94485 1.85822 1.93065 1.83384 1.60441 1.80989 1.93096 1.96180 1.93930 1.34033 1.23228 0.82695 0.81774 0.79049 1.90680 1.21673 1.76880 1.51196 1.84459 1.47547 1.35153 1.65334 1.21169 0.92746 0.97144 0.96497 0.81712 0.81222 0.84351 0.80101 0.91414 0.71377 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.07 18.54 19.00 0.35 -11.71 16 2 C 0.28 6.16 15.33 88.33 1.35 7.52 16 3 C -0.04 -0.79 5.73 -21.36 -0.12 -0.91 16 4 C -0.05 -0.73 9.76 22.54 0.22 -0.51 16 5 C -0.11 -1.69 10.03 22.23 0.22 -1.47 16 6 C -0.08 -1.66 8.71 22.33 0.19 -1.47 16 7 C -0.12 -2.95 4.77 -19.90 -0.09 -3.04 16 8 C 0.12 3.66 2.44 43.42 0.11 3.76 16 9 H 0.10 2.94 6.92 -2.39 -0.02 2.92 16 10 N -0.67 -24.26 5.18 -481.03 -2.49 -26.76 16 11 C 0.15 6.32 1.44 44.17 0.06 6.39 16 12 H 0.07 2.78 4.82 -2.39 -0.01 2.77 16 13 C -0.53 -26.81 8.32 25.60 0.21 -26.60 16 14 H 0.05 2.86 7.92 -2.91 -0.02 2.84 16 15 C 0.05 2.42 5.47 84.65 0.46 2.88 16 16 N -0.91 -50.16 13.96 21.45 0.30 -49.86 16 17 Si 0.90 35.25 26.67 68.60 1.83 37.08 16 18 H -0.23 -7.91 7.11 99.48 0.71 -7.20 16 19 H -0.29 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.24 -8.34 6.14 99.48 0.61 -7.73 16 21 C 0.46 19.50 2.82 71.98 0.20 19.70 16 22 F -0.19 -8.54 16.86 44.97 0.76 -7.78 16 23 F -0.20 -7.53 15.32 44.97 0.69 -6.84 16 24 F -0.19 -8.34 16.96 44.97 0.76 -7.58 16 25 C 0.49 14.64 6.05 71.24 0.43 15.07 16 26 O -0.52 -18.61 17.36 21.96 0.38 -18.23 16 27 O -0.51 -11.42 13.42 -51.48 -0.69 -12.11 16 28 C -0.05 -1.16 9.37 22.54 0.21 -0.95 16 29 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.14 3.26 7.41 -2.91 -0.02 3.24 16 32 H 0.37 13.39 5.63 -89.70 -0.51 12.89 16 33 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.42 5.81 9.10 -74.06 -0.67 5.14 16 35 H 0.15 2.75 8.03 -2.91 -0.02 2.73 16 Total: -1.00 -65.71 329.14 5.29 -60.42 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.07 Total: 23.00 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 3.47 Total: 20.38 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.84 Total: -88.33 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.31 Total: -30.34 kcal Atomic # 9 Polarization: -24.41 SS G_CDS: 2.21 Total: -22.20 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 1.83 Total: 37.08 kcal Total: -65.71 5.29 -60.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.650 kcal (2) G-P(sol) polarization free energy of solvation -65.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds