Wall clock time and date at job start Tue Mar 31 2020 14:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99623 * 2 1 4 4 H 1.48502 * 109.47224 * 239.99951 * 3 2 1 5 5 H 1.48493 * 109.47434 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46837 * 120.00162 * 3 2 1 7 7 C 1.37877 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00374 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99760 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00168 * 179.97438 * 10 9 7 12 12 O 1.21364 * 119.99818 * 0.02562 * 11 10 9 13 13 C 1.49334 * 120.00033 * 180.02562 * 11 10 9 14 14 O 1.21386 * 120.00080 * 359.97438 * 13 11 10 15 15 N 1.34775 * 120.00033 * 179.97438 * 13 11 10 16 16 C 1.39935 * 120.00245 * 184.48645 * 15 13 11 17 17 C 1.38417 * 119.97453 * 325.28786 * 16 15 13 18 18 C 1.39702 * 119.81827 * 180.22722 * 17 16 15 19 19 C 1.47446 * 120.11549 * 179.79486 * 18 17 16 20 20 O 1.21509 * 120.00337 * 179.72339 * 19 18 17 21 21 O 1.34752 * 119.99905 * 359.97438 * 19 18 17 22 22 C 1.39979 * 119.77156 * 359.51830 * 18 17 16 23 23 F 1.35104 * 120.02941 * 180.27211 * 22 18 17 24 24 C 1.38208 * 119.94760 * 0.25213 * 22 18 17 25 25 C 1.38390 * 120.17946 * 359.97438 * 24 22 18 26 26 F 1.35106 * 119.88225 * 180.02562 * 25 24 22 27 27 H 0.96996 * 120.00469 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47095 * 59.99932 * 9 7 2 29 29 H 1.08998 * 109.47123 * 300.00104 * 9 7 2 30 30 H 0.97001 * 119.99942 * 0.02562 * 10 9 7 31 31 H 0.96998 * 120.00413 * 4.48795 * 15 13 11 32 32 H 1.08001 * 120.09235 * 0.02562 * 17 16 15 33 33 H 0.96707 * 116.99867 * 179.72782 * 21 19 18 34 34 H 1.08006 * 119.90859 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5607 -5.1051 -0.0035 13 6 2.7244 -6.0183 -0.0037 14 8 3.9178 -5.7965 -0.0040 15 7 2.2752 -7.2890 -0.0038 16 6 3.1811 -8.3514 0.0905 17 6 4.4267 -8.2531 -0.5051 18 6 5.3267 -9.3176 -0.4128 19 6 6.6536 -9.2217 -1.0487 20 8 7.4367 -10.1468 -0.9629 21 8 6.9996 -8.1061 -1.7206 22 6 4.9667 -10.4733 0.2902 23 9 5.8352 -11.5036 0.3873 24 6 3.7223 -10.5593 0.8853 25 6 2.8306 -9.5054 0.7887 26 9 1.6158 -9.5957 1.3732 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1568 -3.4353 -0.0022 31 1 1.3240 -7.4672 -0.0694 32 1 4.7008 -7.3573 -1.0424 33 1 7.8815 -8.0882 -2.1171 34 1 3.4453 -11.4511 1.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:18 Heat of formation + Delta-G solvation = -215.310478 kcal Electronic energy + Delta-G solvation = -26636.649554 eV Core-core repulsion = 21978.156980 eV Total energy + Delta-G solvation = -4658.492575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.59144 -49.42775 -41.17139 -40.42805 -39.03761 -37.95004 -36.41015 -35.44278 -34.33167 -32.46324 -31.87766 -30.06594 -27.82597 -25.22101 -25.16413 -23.72705 -22.42943 -21.44000 -20.24613 -19.35035 -18.71150 -18.34562 -17.97132 -17.35345 -16.96321 -16.74867 -16.45829 -16.04334 -15.82480 -15.76483 -15.52567 -15.21415 -14.98802 -14.92586 -14.62418 -14.34580 -13.94204 -13.36833 -13.25813 -13.01764 -12.74594 -12.51403 -12.12285 -12.01882 -11.88878 -11.45699 -11.09575 -11.08531 -10.95147 -10.78526 -10.39523 -9.71673 -9.57157 -9.33515 -8.90471 -8.69706 -8.21662 -6.27791 -4.35839 -0.17840 0.37066 1.47631 1.94777 2.25092 2.51447 2.89008 3.21187 3.21271 3.26209 3.27818 3.43995 3.61183 3.77940 3.92313 4.25606 4.34861 4.57490 4.73341 4.90506 5.05773 5.09107 5.22381 5.29844 5.52222 5.68128 6.08581 6.15559 6.67999 6.96384 7.01636 7.27683 7.42467 7.49567 7.58207 7.79572 8.24346 8.43647 8.73911 9.30840 10.82148 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002638 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.939725 B =10610.018732 C =11937.284459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.667 5.667 11 C 0.493 3.507 12 O -0.531 6.531 13 C 0.513 3.487 14 O -0.499 6.499 15 N -0.648 5.648 16 C 0.096 3.904 17 C -0.010 4.010 18 C -0.159 4.159 19 C 0.533 3.467 20 O -0.501 6.501 21 O -0.503 6.503 22 C 0.181 3.819 23 F -0.105 7.105 24 C -0.185 4.185 25 C 0.148 3.852 26 F -0.115 7.115 27 H 0.268 0.732 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.405 0.595 31 H 0.430 0.570 32 H 0.179 0.821 33 H 0.419 0.581 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -20.414 -1.061 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.085 0.915 9 C 0.127 3.873 10 N -0.316 5.316 11 C 0.271 3.729 12 O -0.410 6.410 13 C 0.296 3.704 14 O -0.371 6.371 15 N -0.296 5.296 16 C 0.000 4.000 17 C -0.030 4.030 18 C -0.162 4.162 19 C 0.376 3.624 20 O -0.390 6.390 21 O -0.315 6.315 22 C 0.160 3.840 23 F -0.083 7.083 24 C -0.205 4.205 25 C 0.125 3.875 26 F -0.093 7.093 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.240 0.760 31 H 0.270 0.730 32 H 0.196 0.804 33 H 0.278 0.722 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.539 -20.432 -0.827 22.160 hybrid contribution 0.830 0.647 -0.066 1.054 sum 9.368 -19.785 -0.893 21.909 Atomic orbital electron populations 1.69944 1.06134 1.27738 1.48358 1.24932 0.94951 0.99540 0.94370 0.86414 0.79396 0.81924 0.78878 1.19915 1.21010 1.19931 1.21149 0.93491 0.90043 1.54055 0.91538 1.19383 0.88084 0.81331 0.98523 1.46445 1.12856 1.04839 1.67450 1.19490 0.87927 0.84348 0.81147 1.90764 1.15548 1.84370 1.50313 1.21084 0.89540 0.83927 0.75847 1.90747 1.16320 1.84396 1.45684 1.43117 1.11273 1.03561 1.71676 1.17617 0.93026 0.88541 1.00849 1.21524 0.89947 0.98136 0.93407 1.18978 0.94710 0.95726 1.06777 1.20247 0.86495 0.79846 0.75792 1.90972 1.51768 1.38706 1.57588 1.84587 1.41189 1.40350 1.65325 1.17161 0.87232 0.83953 0.95660 1.91641 1.67671 1.55513 1.93508 1.20796 0.92541 1.01129 1.06037 1.17345 0.82066 0.94176 0.93882 1.91596 1.40257 1.96298 1.81131 0.92188 0.94562 0.94583 0.75973 0.73050 0.80420 0.72165 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 13.29 55.43 0.74 -24.14 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.55 -14.22 9.28 -34.44 -0.32 -14.54 16 8 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.08 5.43 -5.19 -0.03 6.05 16 10 N -0.67 -13.32 5.54 -61.95 -0.34 -13.66 16 11 C 0.49 8.99 7.89 -11.64 -0.09 8.90 16 12 O -0.53 -10.89 16.48 5.48 0.09 -10.80 16 13 C 0.51 7.56 7.73 -11.64 -0.09 7.47 16 14 O -0.50 -7.71 13.89 5.47 0.08 -7.64 16 15 N -0.65 -7.68 5.21 -10.27 -0.05 -7.73 16 16 C 0.10 1.01 6.31 -83.68 -0.53 0.48 16 17 C -0.01 -0.10 8.26 -38.97 -0.32 -0.43 16 18 C -0.16 -1.63 5.88 -104.95 -0.62 -2.25 16 19 C 0.53 5.67 8.26 34.48 0.28 5.96 16 20 O -0.50 -6.54 16.11 -19.27 -0.31 -6.85 16 21 O -0.50 -4.14 12.67 -40.63 -0.51 -4.65 16 22 C 0.18 1.73 7.28 -38.94 -0.28 1.45 16 23 F -0.11 -1.14 15.53 2.25 0.03 -1.11 16 24 C -0.19 -1.44 9.98 -39.54 -0.39 -1.84 16 25 C 0.15 1.34 7.31 -39.11 -0.29 1.05 16 26 F -0.11 -1.07 16.94 2.25 0.04 -1.04 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.41 7.41 7.79 -40.82 -0.32 7.09 16 31 H 0.43 4.63 8.13 -40.82 -0.33 4.30 16 32 H 0.18 2.05 5.73 -52.49 -0.30 1.75 16 33 H 0.42 1.48 9.11 45.56 0.42 1.89 16 34 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -31.63 326.60 -4.46 -36.08 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.34 Total: 7.51 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -2.77 Total: 13.97 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.34 Total: -45.53 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.66 Total: -29.94 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.07 Total: -2.14 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.63 -4.46 -36.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.227 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds