Wall clock time and date at job start Tue Mar 31 2020 14:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99623 * 2 1 4 4 H 1.48502 * 109.47224 * 239.99951 * 3 2 1 5 5 H 1.48493 * 109.47434 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46837 * 120.00162 * 3 2 1 7 7 C 1.37877 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00374 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99760 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00168 * 179.97438 * 10 9 7 12 12 O 1.21364 * 119.99818 * 0.02562 * 11 10 9 13 13 C 1.49334 * 120.00033 * 180.02562 * 11 10 9 14 14 O 1.21386 * 120.00080 * 359.97438 * 13 11 10 15 15 N 1.34775 * 120.00033 * 179.97438 * 13 11 10 16 16 C 1.39935 * 120.00245 * 184.48645 * 15 13 11 17 17 C 1.38417 * 119.97453 * 325.28786 * 16 15 13 18 18 C 1.39702 * 119.81827 * 180.22722 * 17 16 15 19 19 C 1.47446 * 120.11549 * 179.79486 * 18 17 16 20 20 O 1.21509 * 120.00337 * 179.72339 * 19 18 17 21 21 O 1.34752 * 119.99905 * 359.97438 * 19 18 17 22 22 C 1.39979 * 119.77156 * 359.51830 * 18 17 16 23 23 F 1.35104 * 120.02941 * 180.27211 * 22 18 17 24 24 C 1.38208 * 119.94760 * 0.25213 * 22 18 17 25 25 C 1.38390 * 120.17946 * 359.97438 * 24 22 18 26 26 F 1.35106 * 119.88225 * 180.02562 * 25 24 22 27 27 H 0.96996 * 120.00469 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47095 * 59.99932 * 9 7 2 29 29 H 1.08998 * 109.47123 * 300.00104 * 9 7 2 30 30 H 0.97001 * 119.99942 * 0.02562 * 10 9 7 31 31 H 0.96998 * 120.00413 * 4.48795 * 15 13 11 32 32 H 1.08001 * 120.09235 * 0.02562 * 17 16 15 33 33 H 0.96707 * 116.99867 * 179.72782 * 21 19 18 34 34 H 1.08006 * 119.90859 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5607 -5.1051 -0.0035 13 6 2.7244 -6.0183 -0.0037 14 8 3.9178 -5.7965 -0.0040 15 7 2.2752 -7.2890 -0.0038 16 6 3.1811 -8.3514 0.0905 17 6 4.4267 -8.2531 -0.5051 18 6 5.3267 -9.3176 -0.4128 19 6 6.6536 -9.2217 -1.0487 20 8 7.4367 -10.1468 -0.9629 21 8 6.9996 -8.1061 -1.7206 22 6 4.9667 -10.4733 0.2902 23 9 5.8352 -11.5036 0.3873 24 6 3.7223 -10.5593 0.8853 25 6 2.8306 -9.5054 0.7887 26 9 1.6158 -9.5957 1.3732 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1568 -3.4353 -0.0022 31 1 1.3240 -7.4672 -0.0694 32 1 4.7008 -7.3573 -1.0424 33 1 7.8815 -8.0882 -2.1171 34 1 3.4453 -11.4511 1.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:17 Heat of formation + Delta-G solvation = -239.392204 kcal Electronic energy + Delta-G solvation = -26637.693816 eV Core-core repulsion = 21978.156980 eV Total energy + Delta-G solvation = -4659.536837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.34859 -50.23032 -42.27187 -41.34213 -40.23739 -39.12040 -37.18907 -36.72689 -35.87571 -34.36733 -32.64089 -31.00480 -29.66927 -26.55649 -26.01781 -24.89208 -23.83410 -22.44689 -21.55389 -20.57046 -19.49036 -19.40451 -18.88673 -18.38745 -18.04552 -17.89569 -17.49277 -17.25351 -17.09437 -16.86876 -16.73413 -16.33171 -16.13443 -15.85668 -15.71182 -15.44574 -15.26053 -14.88367 -14.19941 -14.06134 -13.94966 -13.79883 -13.57391 -13.34581 -13.00635 -12.72651 -12.69225 -12.66222 -12.21877 -11.96141 -11.70296 -11.54337 -10.82626 -10.81923 -10.42812 -10.06090 -9.57669 -8.30221 -6.46190 -0.97316 -0.43934 0.23938 1.01463 1.17371 1.46290 1.48581 1.57001 1.81210 1.96800 2.17089 2.34571 2.44253 2.54198 2.85766 3.05588 3.17634 3.37817 3.54884 3.82627 4.04506 4.29635 4.45061 4.52493 4.70551 4.82455 4.99400 5.19033 5.24272 5.31507 5.44094 5.49380 5.70228 5.79852 6.31592 6.56664 6.65793 6.84348 6.98539 7.26900 8.81073 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002638 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.939725 B =10610.018732 C =11937.284459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.263 3.737 10 N -0.670 5.670 11 C 0.495 3.505 12 O -0.555 6.555 13 C 0.527 3.473 14 O -0.504 6.504 15 N -0.634 5.634 16 C 0.082 3.918 17 C -0.008 4.008 18 C -0.166 4.166 19 C 0.536 3.464 20 O -0.531 6.531 21 O -0.500 6.500 22 C 0.181 3.819 23 F -0.112 7.112 24 C -0.163 4.163 25 C 0.158 3.842 26 F -0.113 7.113 27 H 0.270 0.730 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.415 0.585 31 H 0.436 0.564 32 H 0.170 0.830 33 H 0.438 0.562 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -21.211 -0.779 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.600 4.600 8 H 0.099 0.901 9 C 0.141 3.859 10 N -0.320 5.320 11 C 0.275 3.725 12 O -0.434 6.434 13 C 0.309 3.691 14 O -0.378 6.378 15 N -0.282 5.282 16 C -0.013 4.013 17 C -0.028 4.028 18 C -0.169 4.169 19 C 0.381 3.619 20 O -0.422 6.422 21 O -0.314 6.314 22 C 0.160 3.840 23 F -0.090 7.090 24 C -0.183 4.183 25 C 0.136 3.864 26 F -0.091 7.091 27 H 0.079 0.921 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.252 0.748 31 H 0.276 0.724 32 H 0.187 0.813 33 H 0.301 0.699 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.892 -21.273 -0.558 23.467 hybrid contribution 0.404 0.767 -0.166 0.883 sum 10.296 -20.505 -0.724 22.957 Atomic orbital electron populations 1.70082 1.07974 1.28782 1.49525 1.25931 0.95753 1.03499 0.93729 0.85272 0.78008 0.76952 0.79428 1.18804 1.20979 1.18919 1.21548 0.94351 0.90543 1.53549 0.90061 1.18841 0.88300 0.83001 0.95722 1.46139 1.12561 1.04739 1.68532 1.20023 0.88276 0.84723 0.79473 1.90748 1.17034 1.84891 1.50768 1.20103 0.88372 0.83898 0.76686 1.90760 1.16012 1.84527 1.46493 1.42884 1.11883 1.02842 1.70592 1.17667 0.92877 0.88581 1.02199 1.21346 0.90001 0.97974 0.93520 1.19021 0.94628 0.96023 1.07185 1.20312 0.86345 0.79798 0.75444 1.90961 1.52602 1.39759 1.58882 1.84560 1.42809 1.39196 1.64824 1.17291 0.87637 0.83504 0.95587 1.91631 1.68068 1.55749 1.93543 1.20998 0.91109 1.01484 1.04678 1.17286 0.82146 0.93712 0.93229 1.91612 1.40259 1.96247 1.81027 0.92069 0.97488 0.97627 0.74845 0.72381 0.81306 0.69910 0.78553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.08 13.29 21.45 0.28 -52.79 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.98 40.96 29.54 68.60 2.03 42.99 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.56 -29.29 9.28 25.60 0.24 -29.05 16 8 H 0.08 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.26 13.40 5.43 85.63 0.46 13.86 16 10 N -0.67 -27.09 5.54 -468.26 -2.59 -29.69 16 11 C 0.50 18.18 7.89 87.23 0.69 18.86 16 12 O -0.55 -23.12 16.48 -3.29 -0.05 -23.17 16 13 C 0.53 15.11 7.73 87.23 0.67 15.79 16 14 O -0.50 -15.04 13.89 -3.36 -0.05 -15.08 16 15 N -0.63 -14.22 5.21 -304.75 -1.59 -15.81 16 16 C 0.08 1.58 6.31 38.16 0.24 1.82 16 17 C -0.01 -0.16 8.26 22.67 0.19 0.03 16 18 C -0.17 -3.16 5.88 -20.08 -0.12 -3.28 16 19 C 0.54 10.84 8.26 70.25 0.58 11.42 16 20 O -0.53 -13.42 16.11 19.81 0.32 -13.10 16 21 O -0.50 -7.57 12.67 -56.62 -0.72 -8.29 16 22 C 0.18 3.07 7.28 22.68 0.17 3.23 16 23 F -0.11 -2.23 15.53 44.97 0.70 -1.53 16 24 C -0.16 -2.04 9.98 22.30 0.22 -1.81 16 25 C 0.16 2.46 7.31 22.57 0.17 2.62 16 26 F -0.11 -1.83 16.94 44.97 0.76 -1.06 16 27 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.41 15.08 7.79 -92.71 -0.72 14.36 16 31 H 0.44 8.88 8.13 -92.71 -0.75 8.12 16 32 H 0.17 3.70 5.73 -2.91 -0.02 3.68 16 33 H 0.44 2.46 9.11 -74.05 -0.67 1.79 16 34 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -68.38 326.60 2.16 -66.22 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.90 Total: 16.76 kcal Atomic # 6 Polarization: 30.59 SS G_CDS: 3.97 Total: 34.56 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -3.90 Total: -98.29 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -0.50 Total: -59.64 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 1.46 Total: -2.60 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -68.38 2.16 -66.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.171 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds