Wall clock time and date at job start Tue Mar 31 2020 14:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48498 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46969 * 300.00283 * 3 2 1 6 6 H 1.48506 * 109.46791 * 60.00053 * 3 2 1 7 7 C 1.37875 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00403 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47339 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99686 * 179.97438 * 10 9 7 12 12 O 1.21362 * 120.00153 * 0.02562 * 11 10 9 13 13 C 1.49338 * 119.99890 * 180.02562 * 11 10 9 14 14 O 1.21395 * 120.00097 * 0.02562 * 13 11 10 15 15 N 1.34770 * 120.00325 * 180.02562 * 13 11 10 16 16 C 1.39939 * 120.00554 * 185.53317 * 15 13 11 17 17 C 1.38932 * 119.97288 * 24.84875 * 16 15 13 18 18 C 1.38218 * 120.32082 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.27138 * 359.71722 * 18 17 16 20 20 F 1.35100 * 120.02858 * 180.27672 * 19 18 17 21 21 C 1.39985 * 119.94542 * 0.56471 * 19 18 17 22 22 C 1.47420 * 120.15704 * 179.72086 * 21 19 18 23 23 O 1.21509 * 119.99319 * 269.71884 * 22 21 19 24 24 O 1.34745 * 120.00697 * 89.44764 * 22 21 19 25 25 C 1.38870 * 119.97701 * 204.83738 * 16 15 13 26 26 F 1.35101 * 120.13456 * 0.03768 * 25 16 15 27 27 H 0.96998 * 120.00349 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46682 * 59.99462 * 9 7 2 29 29 H 1.09001 * 109.47119 * 300.00343 * 9 7 2 30 30 H 0.96998 * 120.00543 * 0.02562 * 10 9 7 31 31 H 0.97008 * 119.99919 * 5.52684 * 15 13 11 32 32 H 1.07994 * 119.84504 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.86320 * 180.02562 * 18 17 16 34 34 H 0.96696 * 117.00190 * 180.27326 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5607 -5.1051 -0.0035 13 6 2.7243 -6.0184 -0.0037 14 8 3.9179 -5.7966 -0.0031 15 7 2.2752 -7.2890 -0.0049 16 6 3.1792 -8.3509 0.1116 17 6 4.4090 -8.1513 0.7262 18 6 5.3071 -9.1951 0.8456 19 6 4.9868 -10.4489 0.3594 20 9 5.8661 -11.4671 0.4837 21 6 3.7532 -10.6612 -0.2673 22 6 3.4094 -11.9949 -0.7930 23 8 3.6903 -12.2872 -1.9385 24 8 2.7887 -12.8917 -0.0017 25 6 2.8462 -9.6035 -0.3872 26 9 1.6509 -9.7994 -0.9857 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1568 -3.4354 -0.0022 31 1 1.3252 -7.4676 -0.0863 32 1 4.6643 -7.1760 1.1134 33 1 6.2609 -9.0318 1.3251 34 1 2.5873 -13.7542 -0.3896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:15 Heat of formation + Delta-G solvation = -211.806464 kcal Electronic energy + Delta-G solvation = -26525.845413 eV Core-core repulsion = 21867.504783 eV Total energy + Delta-G solvation = -4658.340629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.63070 -49.56417 -41.18925 -40.61336 -39.12260 -37.98778 -36.58024 -35.50546 -34.36410 -32.47944 -31.92490 -30.06128 -27.85494 -25.68730 -25.10611 -23.20441 -22.75872 -21.65080 -20.24445 -19.34604 -18.85421 -18.63080 -18.10140 -17.75538 -16.91789 -16.64572 -16.43358 -16.13005 -15.93268 -15.81045 -15.67084 -15.55387 -15.15313 -14.90677 -14.42339 -14.11755 -14.04159 -13.54524 -13.28750 -13.12408 -12.80637 -12.50936 -12.15390 -12.05299 -12.03394 -11.51503 -11.37029 -11.06588 -11.00320 -10.87246 -10.40352 -9.70607 -9.55024 -9.34734 -8.92910 -8.63236 -8.23621 -6.29202 -4.37105 0.11668 0.25298 1.43443 1.49559 2.13054 2.40049 2.73145 3.10965 3.18110 3.25951 3.29185 3.41465 3.64008 3.73022 4.10245 4.23368 4.24890 4.48270 4.70991 4.88065 5.02910 5.07951 5.13669 5.39963 5.52240 5.67795 5.85903 6.14582 6.64441 6.93973 6.99232 7.26127 7.26215 7.39237 7.54058 7.78085 8.21770 8.41447 8.72722 9.29728 10.80817 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.002296 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.951290 B =12193.438370 C =12877.930587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.245 3.755 10 N -0.666 5.666 11 C 0.492 3.508 12 O -0.530 6.530 13 C 0.515 3.485 14 O -0.498 6.498 15 N -0.645 5.645 16 C 0.121 3.879 17 C -0.055 4.055 18 C -0.132 4.132 19 C 0.148 3.852 20 F -0.121 7.121 21 C -0.160 4.160 22 C 0.542 3.458 23 O -0.485 6.485 24 O -0.500 6.500 25 C 0.137 3.863 26 F -0.115 7.115 27 H 0.267 0.733 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.405 0.595 31 H 0.431 0.569 32 H 0.177 0.823 33 H 0.161 0.839 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 -22.471 2.826 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.086 0.914 9 C 0.126 3.874 10 N -0.315 5.315 11 C 0.270 3.730 12 O -0.409 6.409 13 C 0.298 3.702 14 O -0.371 6.371 15 N -0.292 5.292 16 C 0.024 3.976 17 C -0.075 4.075 18 C -0.152 4.152 19 C 0.127 3.873 20 F -0.100 7.100 21 C -0.164 4.164 22 C 0.382 3.618 23 O -0.371 6.371 24 O -0.312 6.312 25 C 0.114 3.886 26 F -0.093 7.093 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.240 0.760 31 H 0.270 0.730 32 H 0.194 0.806 33 H 0.178 0.822 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 8.385 -21.942 2.656 23.640 hybrid contribution 0.099 -0.002 -0.485 0.495 sum 8.484 -21.945 2.171 23.627 Atomic orbital electron populations 1.69967 1.06132 1.27528 1.48497 1.24942 0.94958 0.99581 0.94389 0.86302 0.79895 0.82578 0.77840 1.19480 1.20701 1.20693 1.21215 0.93544 0.89989 1.53843 0.91438 1.19404 0.88099 0.81352 0.98567 1.46444 1.12865 1.04803 1.67419 1.19478 0.87923 0.84341 0.81239 1.90771 1.15526 1.84334 1.50240 1.21077 0.89509 0.83837 0.75747 1.90701 1.16325 1.84440 1.45632 1.43179 1.11528 1.03772 1.70673 1.17618 0.93353 0.86191 1.00424 1.21512 0.90433 1.01331 0.94220 1.21116 1.02208 0.89735 1.02118 1.17170 0.85976 0.85720 0.98387 1.91574 1.66801 1.57986 1.93589 1.18625 0.96184 0.91771 1.09778 1.20197 0.74065 0.84371 0.83207 1.90975 1.49315 1.78375 1.18479 1.84660 1.71328 1.28175 1.47072 1.16762 0.82173 0.92078 0.97547 1.91583 1.41752 1.95473 1.80513 0.92292 0.94553 0.94522 0.75964 0.72999 0.80621 0.82178 0.72211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.29 55.43 0.74 -24.06 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.55 -14.09 9.28 -34.44 -0.32 -14.41 16 8 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16 9 C 0.25 6.01 5.43 -5.20 -0.03 5.98 16 10 N -0.67 -13.13 5.54 -61.95 -0.34 -13.48 16 11 C 0.49 8.89 7.89 -11.64 -0.09 8.80 16 12 O -0.53 -10.86 16.48 5.49 0.09 -10.77 16 13 C 0.51 7.45 7.69 -11.64 -0.09 7.36 16 14 O -0.50 -7.36 13.63 5.46 0.07 -7.29 16 15 N -0.64 -7.79 5.29 -10.26 -0.05 -7.84 16 16 C 0.12 1.32 6.43 -83.67 -0.54 0.78 16 17 C -0.05 -0.52 8.71 -39.33 -0.34 -0.86 16 18 C -0.13 -1.03 10.00 -39.59 -0.40 -1.43 16 19 C 0.15 1.38 7.29 -38.93 -0.28 1.10 16 20 F -0.12 -1.16 16.82 2.25 0.04 -1.13 16 21 C -0.16 -1.69 5.76 -104.90 -0.60 -2.30 16 22 C 0.54 5.84 7.05 34.47 0.24 6.08 16 23 O -0.49 -6.52 17.89 -19.27 -0.34 -6.86 16 24 O -0.50 -3.81 13.44 -40.61 -0.55 -4.36 16 25 C 0.14 1.49 7.30 -38.74 -0.28 1.21 16 26 F -0.11 -1.31 16.37 2.25 0.04 -1.27 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.41 7.26 7.79 -40.82 -0.32 6.94 16 31 H 0.43 4.87 7.93 -40.82 -0.32 4.55 16 32 H 0.18 1.72 5.77 -52.49 -0.30 1.42 16 33 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.42 1.12 9.11 45.56 0.42 1.53 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -31.70 328.74 -4.54 -36.24 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -1.33 Total: 6.83 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: -2.83 Total: 13.96 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.34 Total: -45.37 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.73 Total: -29.27 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.07 Total: -2.40 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.70 -4.54 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.569 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds