Wall clock time and date at job start Tue Mar 31 2020 14:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48498 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46969 * 300.00283 * 3 2 1 6 6 H 1.48506 * 109.46791 * 60.00053 * 3 2 1 7 7 C 1.37875 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00403 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47339 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99686 * 179.97438 * 10 9 7 12 12 O 1.21362 * 120.00153 * 0.02562 * 11 10 9 13 13 C 1.49338 * 119.99890 * 180.02562 * 11 10 9 14 14 O 1.21395 * 120.00097 * 0.02562 * 13 11 10 15 15 N 1.34770 * 120.00325 * 180.02562 * 13 11 10 16 16 C 1.39939 * 120.00554 * 185.53317 * 15 13 11 17 17 C 1.38932 * 119.97288 * 24.84875 * 16 15 13 18 18 C 1.38218 * 120.32082 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.27138 * 359.71722 * 18 17 16 20 20 F 1.35100 * 120.02858 * 180.27672 * 19 18 17 21 21 C 1.39985 * 119.94542 * 0.56471 * 19 18 17 22 22 C 1.47420 * 120.15704 * 179.72086 * 21 19 18 23 23 O 1.21509 * 119.99319 * 269.71884 * 22 21 19 24 24 O 1.34745 * 120.00697 * 89.44764 * 22 21 19 25 25 C 1.38870 * 119.97701 * 204.83738 * 16 15 13 26 26 F 1.35101 * 120.13456 * 0.03768 * 25 16 15 27 27 H 0.96998 * 120.00349 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46682 * 59.99462 * 9 7 2 29 29 H 1.09001 * 109.47119 * 300.00343 * 9 7 2 30 30 H 0.96998 * 120.00543 * 0.02562 * 10 9 7 31 31 H 0.97008 * 119.99919 * 5.52684 * 15 13 11 32 32 H 1.07994 * 119.84504 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.86320 * 180.02562 * 18 17 16 34 34 H 0.96696 * 117.00190 * 180.27326 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5607 -5.1051 -0.0035 13 6 2.7243 -6.0184 -0.0037 14 8 3.9179 -5.7966 -0.0031 15 7 2.2752 -7.2890 -0.0049 16 6 3.1792 -8.3509 0.1116 17 6 4.4090 -8.1513 0.7262 18 6 5.3071 -9.1951 0.8456 19 6 4.9868 -10.4489 0.3594 20 9 5.8661 -11.4671 0.4837 21 6 3.7532 -10.6612 -0.2673 22 6 3.4094 -11.9949 -0.7930 23 8 3.6903 -12.2872 -1.9385 24 8 2.7887 -12.8917 -0.0017 25 6 2.8462 -9.6035 -0.3872 26 9 1.6509 -9.7994 -0.9857 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1568 -3.4354 -0.0022 31 1 1.3252 -7.4676 -0.0863 32 1 4.6643 -7.1760 1.1134 33 1 6.2609 -9.0318 1.3251 34 1 2.5873 -13.7542 -0.3896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:15 Heat of formation + Delta-G solvation = -235.999812 kcal Electronic energy + Delta-G solvation = -26526.894515 eV Core-core repulsion = 21867.504783 eV Total energy + Delta-G solvation = -4659.389732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.48818 -50.31676 -42.30204 -41.47071 -40.33532 -39.14586 -37.34622 -36.76035 -35.90921 -34.37266 -32.70174 -30.98001 -29.68674 -26.59755 -26.42281 -24.54819 -23.76954 -22.82170 -21.51573 -20.55501 -19.77600 -19.44316 -19.03554 -18.76207 -18.18392 -17.86920 -17.40876 -17.30312 -17.04334 -16.88681 -16.76566 -16.64983 -16.36235 -15.98638 -15.81311 -15.42555 -14.97656 -14.79003 -14.34935 -14.08365 -14.03231 -13.92074 -13.61013 -13.30494 -12.97885 -12.82808 -12.75899 -12.70149 -12.26754 -12.20393 -11.78867 -11.48709 -10.84966 -10.81194 -10.43398 -10.06862 -9.49972 -8.30497 -6.46166 -0.68221 -0.56871 0.27036 0.60489 1.01921 1.45793 1.46683 1.59764 1.62845 1.85994 2.11821 2.30956 2.35225 2.52121 2.86632 3.05651 3.29158 3.42035 3.49944 3.73361 3.96066 4.21201 4.44356 4.60555 4.76203 4.86666 4.99449 5.18663 5.20991 5.24038 5.35071 5.49372 5.67865 5.79674 6.25734 6.56100 6.63545 6.64677 6.98469 7.26988 8.81258 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.002296 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.951290 B =12193.438370 C =12877.930587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.262 3.738 10 N -0.668 5.668 11 C 0.494 3.506 12 O -0.556 6.556 13 C 0.531 3.469 14 O -0.497 6.497 15 N -0.634 5.634 16 C 0.108 3.892 17 C -0.052 4.052 18 C -0.111 4.111 19 C 0.152 3.848 20 F -0.121 7.121 21 C -0.172 4.172 22 C 0.545 3.455 23 O -0.519 6.519 24 O -0.492 6.492 25 C 0.133 3.867 26 F -0.122 7.122 27 H 0.270 0.730 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.416 0.584 31 H 0.433 0.567 32 H 0.178 0.822 33 H 0.196 0.804 34 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.774 -23.001 3.491 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.140 3.860 10 N -0.318 5.318 11 C 0.274 3.726 12 O -0.436 6.436 13 C 0.313 3.687 14 O -0.371 6.371 15 N -0.281 5.281 16 C 0.012 3.988 17 C -0.072 4.072 18 C -0.130 4.130 19 C 0.131 3.869 20 F -0.099 7.099 21 C -0.176 4.176 22 C 0.387 3.613 23 O -0.408 6.408 24 O -0.306 6.306 25 C 0.111 3.889 26 F -0.100 7.100 27 H 0.079 0.921 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.253 0.747 31 H 0.273 0.727 32 H 0.195 0.805 33 H 0.213 0.787 34 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 10.721 -22.552 3.336 25.193 hybrid contribution -0.638 -0.031 -0.651 0.912 sum 10.082 -22.583 2.685 24.877 Atomic orbital electron populations 1.70101 1.08001 1.28633 1.49711 1.25947 0.95760 1.03563 0.93804 0.85161 0.79094 0.77614 0.77693 1.17922 1.20555 1.20388 1.21599 0.94378 0.90424 1.53216 0.89933 1.18859 0.88345 0.83071 0.95726 1.46119 1.12605 1.04623 1.68448 1.20024 0.88258 0.84765 0.79535 1.90756 1.17157 1.84894 1.50783 1.20031 0.88408 0.83585 0.76649 1.90712 1.15725 1.84477 1.46198 1.42964 1.12040 1.03212 1.69837 1.17707 0.93768 0.85602 1.01751 1.21591 0.89951 1.01870 0.93753 1.21400 1.02857 0.88226 1.00471 1.17292 0.85420 0.86224 0.97971 1.91582 1.66668 1.58134 1.93521 1.18767 0.96801 0.91766 1.10253 1.20266 0.73523 0.84756 0.82793 1.90963 1.50939 1.79099 1.19825 1.84622 1.70290 1.29178 1.46551 1.16761 0.82129 0.92164 0.97859 1.91564 1.42201 1.95525 1.80742 0.92112 0.97704 0.97460 0.74705 0.72675 0.80473 0.78726 0.69741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.01 13.29 21.45 0.28 -52.73 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.98 40.80 29.54 68.60 2.03 42.83 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.56 -28.82 9.28 25.60 0.24 -28.58 16 8 H 0.08 3.92 7.60 -2.91 -0.02 3.90 16 9 C 0.26 13.24 5.43 85.63 0.46 13.70 16 10 N -0.67 -26.56 5.54 -468.25 -2.59 -29.15 16 11 C 0.49 17.98 7.89 87.23 0.69 18.67 16 12 O -0.56 -23.33 16.48 -3.28 -0.05 -23.38 16 13 C 0.53 14.86 7.69 87.24 0.67 15.53 16 14 O -0.50 -13.81 13.63 -3.39 -0.05 -13.85 16 15 N -0.63 -14.73 5.29 -304.72 -1.61 -16.34 16 16 C 0.11 2.18 6.43 38.16 0.25 2.42 16 17 C -0.05 -0.85 8.71 22.43 0.20 -0.65 16 18 C -0.11 -1.36 10.00 22.26 0.22 -1.14 16 19 C 0.15 2.46 7.29 22.69 0.17 2.62 16 20 F -0.12 -2.02 16.82 44.97 0.76 -1.26 16 21 C -0.17 -3.39 5.76 -20.04 -0.12 -3.50 16 22 C 0.55 11.15 7.05 70.24 0.50 11.65 16 23 O -0.52 -13.67 17.89 19.81 0.35 -13.31 16 24 O -0.49 -6.70 13.44 -56.55 -0.76 -7.46 16 25 C 0.13 2.75 7.30 22.81 0.17 2.91 16 26 F -0.12 -2.72 16.37 44.97 0.74 -1.99 16 27 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.42 14.64 7.79 -92.71 -0.72 13.92 16 31 H 0.43 9.64 7.93 -92.70 -0.73 8.91 16 32 H 0.18 2.98 5.77 -2.91 -0.02 2.96 16 33 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.44 1.58 9.11 -74.06 -0.67 0.91 16 Total: -1.00 -68.94 328.74 2.10 -66.83 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.88 Total: 15.23 kcal Atomic # 6 Polarization: 30.69 SS G_CDS: 3.90 Total: 34.59 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -3.92 Total: -98.23 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -0.51 Total: -58.00 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 1.49 Total: -3.25 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -68.94 2.10 -66.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.169 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds