Wall clock time and date at job start Tue Mar 31 2020 14:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 119.99890 * 2 1 4 4 H 1.48500 * 109.47340 * 270.00044 * 3 2 1 5 5 H 1.48499 * 109.47065 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47221 * 150.00045 * 3 2 1 7 7 C 1.38651 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00355 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.35759 * 117.00060 * 185.05316 * 9 7 2 11 11 C 1.39049 * 119.98623 * 354.40532 * 10 9 7 12 12 C 1.38252 * 120.28498 * 180.02562 * 11 10 9 13 13 C 1.37958 * 120.25074 * 359.97438 * 12 11 10 14 14 C 1.39907 * 119.95691 * 359.97438 * 13 12 11 15 15 C 1.47169 * 120.13445 * 179.97438 * 14 13 12 16 16 C 1.34935 * 119.99523 * 136.98662 * 15 14 13 17 17 C 1.46437 * 120.00178 * 348.71218 * 16 15 14 18 18 O 1.21876 * 119.99920 * 353.49034 * 17 16 15 19 19 C 1.46824 * 120.00210 * 173.48992 * 17 16 15 20 20 C 1.36194 * 125.65063 * 179.72203 * 19 17 16 21 21 C 1.41737 * 106.61168 * 180.26312 * 20 19 17 22 22 C 1.47358 * 126.77913 * 179.97438 * 21 20 19 23 23 O 1.21520 * 120.00416 * 359.97438 * 22 21 20 24 24 O 1.34752 * 120.00139 * 179.97438 * 22 21 20 25 25 C 1.37941 * 106.43657 * 359.97438 * 21 20 19 26 26 O 1.33516 * 108.34433 * 0.02562 * 25 21 20 27 27 C 1.38526 * 119.98126 * 174.63311 * 10 9 7 28 28 H 0.96999 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.85789 * 359.97438 * 11 10 9 30 30 H 1.08005 * 119.87448 * 179.97438 * 12 11 10 31 31 H 1.07999 * 120.02340 * 179.97438 * 13 12 11 32 32 H 1.07994 * 120.00412 * 316.98119 * 15 14 13 33 33 H 1.07997 * 119.99514 * 168.71255 * 16 15 14 34 34 H 1.08003 * 126.69644 * 0.25519 * 20 19 17 35 35 H 0.96702 * 117.00486 * 180.02562 * 24 22 21 36 36 H 1.08006 * 125.83093 * 180.02562 * 25 21 20 37 37 H 1.07999 * 120.11967 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4057 -0.1081 11 6 3.2209 -3.5749 -0.0936 12 6 3.8422 -4.8052 -0.2017 13 6 5.2140 -4.8826 -0.3253 14 6 5.9811 -3.7127 -0.3422 15 6 7.4448 -3.7908 -0.4734 16 6 8.0948 -2.9401 -1.2946 17 6 7.3398 -2.1108 -2.2363 18 8 6.1385 -2.2725 -2.3631 19 6 8.0300 -1.0846 -3.0277 20 6 7.4447 -0.2564 -3.9367 21 6 8.4760 0.5617 -4.4624 22 6 8.3326 1.6163 -5.4815 23 8 7.2410 1.8556 -5.9589 24 8 9.4118 2.3155 -5.8841 25 6 9.6403 0.1755 -3.8315 26 8 9.3493 -0.8098 -2.9787 27 6 5.3521 -2.4699 -0.2270 28 1 -0.4851 0.8400 0.0004 29 1 2.1466 -3.5217 0.0033 30 1 3.2512 -5.7092 -0.1892 31 1 5.6955 -5.8457 -0.4091 32 1 7.9987 -4.5288 0.0877 33 1 9.1719 -2.8708 -1.2574 34 1 6.3989 -0.2284 -4.2049 35 1 9.2682 2.9975 -6.5544 36 1 10.6201 0.5980 -3.9988 37 1 5.9383 -1.5629 -0.2343 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:01 Heat of formation + Delta-G solvation = -98.661933 kcal Electronic energy + Delta-G solvation = -26341.482224 eV Core-core repulsion = 22209.984688 eV Total energy + Delta-G solvation = -4131.497536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.96606 -41.20505 -40.97711 -40.22832 -38.23766 -37.14917 -34.84983 -34.48674 -34.30017 -31.96785 -31.12273 -30.24223 -27.28707 -26.47892 -25.57259 -23.96000 -22.87026 -22.24186 -21.96659 -20.51722 -19.61412 -19.38179 -18.86655 -18.34556 -17.67549 -17.17166 -16.96408 -16.85245 -16.54974 -16.40753 -16.12706 -15.81552 -15.68006 -15.16028 -14.92705 -14.61681 -14.46218 -14.36609 -14.27206 -14.02030 -13.76506 -13.65939 -13.13407 -12.72003 -12.71491 -12.49696 -12.43998 -11.99556 -11.98032 -11.40458 -11.37000 -11.16049 -10.97786 -10.75596 -9.98162 -9.18805 -9.02642 -8.53716 -6.24647 -0.72541 -0.00184 0.29046 0.72804 1.03544 1.22048 1.28172 1.42873 1.45646 1.84830 1.91117 2.20397 2.22453 2.75838 3.01270 3.05126 3.18108 3.38990 3.68152 3.85226 4.05757 4.17124 4.18680 4.31311 4.45004 4.56651 4.58483 4.65836 4.67452 4.79647 4.85880 5.08702 5.23049 5.28550 5.38265 5.46927 5.54566 5.66341 5.69825 5.76906 5.89835 6.22275 6.46265 6.81526 6.88114 7.59078 8.58525 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.004175 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.294951 B = 6704.263101 C = 9155.708272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.396 4.396 8 H 0.082 0.918 9 O -0.253 6.253 10 C 0.109 3.891 11 C -0.228 4.228 12 C -0.088 4.088 13 C -0.152 4.152 14 C -0.050 4.050 15 C 0.009 3.991 16 C -0.230 4.230 17 C 0.438 3.562 18 O -0.452 6.452 19 C -0.097 4.097 20 C -0.101 4.101 21 C -0.270 4.270 22 C 0.563 3.437 23 O -0.559 6.559 24 O -0.493 6.493 25 C 0.130 3.870 26 O -0.128 6.128 27 C -0.128 4.128 28 H 0.284 0.716 29 H 0.106 0.894 30 H 0.144 0.856 31 H 0.163 0.837 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.139 0.861 35 H 0.437 0.563 36 H 0.288 0.712 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.230 -3.503 -6.389 30.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.472 4.472 8 H 0.099 0.901 9 O -0.161 6.161 10 C 0.060 3.940 11 C -0.247 4.247 12 C -0.106 4.106 13 C -0.170 4.170 14 C -0.050 4.050 15 C -0.009 4.009 16 C -0.248 4.248 17 C 0.320 3.680 18 O -0.330 6.330 19 C -0.146 4.146 20 C -0.121 4.121 21 C -0.272 4.272 22 C 0.409 3.591 23 O -0.452 6.452 24 O -0.308 6.308 25 C 0.057 3.943 26 O -0.020 6.020 27 C -0.147 4.147 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.180 0.820 32 H 0.209 0.791 33 H 0.202 0.798 34 H 0.157 0.843 35 H 0.300 0.700 36 H 0.303 0.697 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 28.466 -3.650 -6.062 29.333 hybrid contribution -1.430 1.591 -0.910 2.325 sum 27.037 -2.059 -6.972 27.997 Atomic orbital electron populations 1.69715 1.06633 1.29431 1.50660 1.25178 0.95854 1.01752 0.95820 0.85336 0.78996 0.78184 0.78898 1.20041 1.18324 1.18928 1.20715 0.78187 0.96089 1.52240 0.90081 1.83515 1.21215 1.27587 1.83816 1.19451 0.92994 0.85220 0.96291 1.21441 1.00129 0.93490 1.09627 1.21070 0.95711 0.96057 0.97799 1.21339 0.92961 0.98188 1.04513 1.18994 0.94696 0.91673 0.99662 1.22991 0.90415 0.94451 0.93026 1.23547 1.02438 0.99541 0.99239 1.19841 0.87095 0.79819 0.81281 1.91028 1.16514 1.64119 1.61335 1.22518 0.81968 1.04667 1.05496 1.22023 1.00642 0.94171 0.95220 1.19722 0.95799 1.04655 1.07044 1.19675 0.81374 0.79129 0.78889 1.90947 1.29682 1.67703 1.56827 1.84443 1.36626 1.50450 1.59254 1.26405 1.00413 0.83793 0.83734 1.84007 1.23826 1.43893 1.50275 1.20242 0.90429 0.97822 1.06204 0.90603 0.87626 0.83815 0.81961 0.79085 0.79842 0.84261 0.69977 0.69731 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.02 13.96 21.61 0.30 -57.72 16 2 C 0.01 0.74 5.49 84.83 0.47 1.21 16 3 Si 0.96 49.25 28.62 68.60 1.96 51.21 16 4 H -0.27 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.40 -25.02 9.95 67.92 0.68 -24.35 16 8 H 0.08 5.32 5.43 -2.91 -0.02 5.30 16 9 O -0.25 -15.03 8.58 -22.88 -0.20 -15.23 16 10 C 0.11 5.56 6.64 22.53 0.15 5.71 16 11 C -0.23 -10.74 9.17 22.47 0.21 -10.53 16 12 C -0.09 -3.16 10.02 22.21 0.22 -2.93 16 13 C -0.15 -4.50 9.79 22.61 0.22 -4.28 16 14 C -0.05 -1.59 4.55 -20.16 -0.09 -1.68 16 15 C 0.01 0.17 9.81 23.86 0.23 0.41 16 16 C -0.23 -4.42 9.72 23.65 0.23 -4.19 16 17 C 0.44 12.60 6.10 26.65 0.16 12.76 16 18 O -0.45 -17.82 12.65 -4.91 -0.06 -17.89 16 19 C -0.10 -2.45 7.02 24.04 0.17 -2.28 16 20 C -0.10 -2.90 10.42 22.66 0.24 -2.67 16 21 C -0.27 -5.71 6.16 -20.08 -0.12 -5.83 16 22 C 0.56 12.26 8.33 70.22 0.58 12.84 16 23 O -0.56 -17.80 17.72 19.77 0.35 -17.45 16 24 O -0.49 -5.37 13.27 -56.62 -0.75 -6.12 16 25 C 0.13 1.46 11.98 67.75 0.81 2.27 16 26 O -0.13 -2.03 10.42 -0.66 -0.01 -2.04 16 27 C -0.13 -5.40 6.53 22.71 0.15 -5.25 16 28 H 0.28 16.38 8.31 -92.71 -0.77 15.61 16 29 H 0.11 5.45 5.62 -2.91 -0.02 5.43 16 30 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.18 1.87 8.00 -2.91 -0.02 1.85 16 34 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.44 1.23 9.11 -74.06 -0.67 0.56 16 36 H 0.29 -0.38 8.06 -2.91 -0.02 -0.40 16 37 H 0.10 4.33 6.99 -2.91 -0.02 4.31 16 Total: -1.00 -91.29 341.97 6.38 -84.91 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.48 Total: 9.12 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 4.30 Total: -28.79 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.30 Total: -57.72 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.67 Total: -58.72 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.96 Total: 51.21 kcal Total: -91.29 6.38 -84.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.756 kcal (2) G-P(sol) polarization free energy of solvation -91.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds