Wall clock time and date at job start Tue Mar 31 2020 14:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86796 * 119.99666 * 2 1 4 4 H 1.48499 * 109.47236 * 239.99816 * 3 2 1 5 5 H 1.48493 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46986 * 120.00076 * 3 2 1 7 7 C 1.38655 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99743 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00073 * 185.07143 * 9 7 2 11 11 C 1.39055 * 119.98245 * 174.47651 * 10 9 7 12 12 C 1.38250 * 120.28456 * 180.02562 * 11 10 9 13 13 C 1.37961 * 120.24791 * 359.97438 * 12 11 10 14 14 C 1.39896 * 119.96343 * 0.02562 * 13 12 11 15 15 C 1.47160 * 120.14500 * 179.97438 * 14 13 12 16 16 C 1.34935 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.46440 * 120.00323 * 180.02562 * 16 15 14 18 18 O 1.21877 * 119.99772 * 359.97438 * 17 16 15 19 19 C 1.46822 * 120.00280 * 179.97438 * 17 16 15 20 20 C 1.36198 * 125.65000 * 180.02562 * 19 17 16 21 21 C 1.41731 * 106.61517 * 180.02562 * 20 19 17 22 22 C 1.47350 * 126.78654 * 179.97438 * 21 20 19 23 23 O 1.21521 * 120.00078 * 359.72641 * 22 21 20 24 24 O 1.34752 * 120.00271 * 180.02562 * 22 21 20 25 25 C 1.37951 * 106.43322 * 0.26047 * 21 20 19 26 26 O 1.33509 * 108.34274 * 359.56833 * 25 21 20 27 27 C 1.38518 * 119.98417 * 354.71700 * 10 9 7 28 28 H 0.96996 * 120.00372 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.85876 * 0.02562 * 11 10 9 30 30 H 1.08004 * 119.87453 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.01836 * 180.02562 * 13 12 11 32 32 H 1.07995 * 120.00445 * 180.02562 * 15 14 13 33 33 H 1.08004 * 120.00020 * 359.97438 * 16 15 14 34 34 H 1.08002 * 126.69478 * 0.05767 * 20 19 17 35 35 H 0.96705 * 116.99704 * 179.72701 * 24 22 21 36 36 H 1.08008 * 125.82829 * 179.70143 * 25 21 20 37 37 H 1.08003 * 120.12322 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3685 0.0016 10 6 2.0701 -3.5046 0.1090 11 6 1.4341 -4.7350 0.2322 12 6 2.1768 -5.8958 0.3425 13 6 3.5554 -5.8426 0.3307 14 6 4.2060 -4.6103 0.2073 15 6 5.6762 -4.5488 0.1948 16 6 6.3998 -5.6827 0.3021 17 6 7.8629 -5.6216 0.2902 18 8 8.4270 -4.5465 0.1831 19 6 8.6502 -6.8553 0.4075 20 6 10.0100 -6.9320 0.4100 21 6 10.3383 -8.3044 0.5419 22 6 11.6907 -8.8873 0.5929 23 8 12.6662 -8.1669 0.5141 24 8 11.8458 -10.2197 0.7210 25 6 9.1415 -8.9875 0.6063 26 8 8.1467 -8.1003 0.5300 27 6 3.4536 -3.4370 0.1008 28 1 -0.4850 0.8400 -0.0004 29 1 0.3552 -4.7841 0.2417 30 1 1.6760 -6.8479 0.4382 31 1 4.1319 -6.7517 0.4167 32 1 6.1761 -3.5962 0.0998 33 1 5.8999 -6.6353 0.3975 34 1 10.7030 -6.1077 0.3281 35 1 12.7522 -10.5557 0.7459 36 1 9.0286 -10.0572 0.7042 37 1 3.9491 -2.4818 0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:05 Heat of formation + Delta-G solvation = -92.510012 kcal Electronic energy + Delta-G solvation = -24886.335852 eV Core-core repulsion = 20755.105083 eV Total energy + Delta-G solvation = -4131.230768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.28450 -40.33572 -39.47733 -39.02313 -36.80435 -36.54610 -33.92369 -33.51956 -32.28980 -31.04407 -29.79415 -28.72467 -25.80087 -25.28745 -24.84453 -22.63076 -21.80566 -21.49630 -20.68240 -19.29089 -18.36449 -18.23379 -17.77419 -17.06018 -16.97530 -16.49478 -15.87260 -15.84106 -15.37920 -15.28409 -14.54041 -14.30434 -14.24780 -14.05709 -13.77424 -13.72616 -13.59653 -13.13880 -12.97292 -12.50561 -12.14260 -12.11139 -11.79923 -11.69903 -11.22896 -11.04674 -10.92497 -10.76968 -10.64699 -10.50665 -10.28480 -9.94757 -9.52608 -9.29334 -8.90345 -8.01065 -7.39561 -6.52594 -4.12867 0.14011 0.66187 1.20988 2.12858 2.14849 2.34942 2.49205 2.58282 3.09941 3.10917 3.13997 3.21222 3.74561 3.90901 4.01865 4.29388 4.46108 4.88034 4.96189 4.99202 5.05850 5.12234 5.14396 5.24285 5.35476 5.56849 5.61458 5.69342 5.91794 5.94661 5.96339 6.14068 6.25102 6.38364 6.56836 6.64911 6.93094 7.05097 7.14998 7.26657 7.27921 7.39499 7.58983 7.90225 8.92412 9.58728 10.64726 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.002036 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.945012 B =13747.069971 C =15028.715234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.145 3.855 11 C -0.170 4.170 12 C -0.084 4.084 13 C -0.182 4.182 14 C -0.056 4.056 15 C 0.030 3.970 16 C -0.266 4.266 17 C 0.468 3.532 18 O -0.444 6.444 19 C -0.083 4.083 20 C -0.077 4.077 21 C -0.240 4.240 22 C 0.557 3.443 23 O -0.509 6.509 24 O -0.514 6.514 25 C 0.080 3.920 26 O -0.137 6.137 27 C -0.198 4.198 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.172 0.828 35 H 0.418 0.582 36 H 0.230 0.770 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.779 -19.558 1.530 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.091 3.909 11 C -0.189 4.189 12 C -0.102 4.102 13 C -0.200 4.200 14 C -0.056 4.056 15 C 0.011 3.989 16 C -0.284 4.284 17 C 0.350 3.650 18 O -0.323 6.323 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.243 4.243 22 C 0.401 3.599 23 O -0.397 6.397 24 O -0.327 6.327 25 C 0.006 3.994 26 O -0.029 6.029 27 C -0.217 4.217 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.190 0.810 35 H 0.278 0.722 36 H 0.246 0.754 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.159 -18.445 1.423 24.563 hybrid contribution 1.330 0.367 0.040 1.380 sum 17.489 -18.078 1.463 25.196 Atomic orbital electron populations 1.70019 1.05983 1.27978 1.45417 1.25293 0.95860 0.98885 0.96294 0.85781 0.78748 0.79625 0.79345 1.19377 1.20207 1.19380 1.21270 0.91773 0.80738 1.53425 0.89054 1.84002 1.34115 1.11368 1.78238 1.19259 0.90017 0.88394 0.93262 1.20453 0.99952 0.90322 1.08166 1.20611 0.93507 0.96986 0.99143 1.20862 0.94389 0.96107 1.08673 1.18659 0.91031 0.93736 1.02178 1.22766 0.92966 0.98421 0.84732 1.23131 0.92458 1.00611 1.12214 1.19041 0.88952 0.84213 0.72773 1.90785 1.74331 1.28594 1.38595 1.22728 0.92897 0.84781 1.12823 1.21993 0.94421 0.95954 0.97239 1.19647 0.91439 0.94335 1.18853 1.19625 0.88197 0.79901 0.72139 1.90940 1.40943 1.61619 1.46245 1.84519 1.38666 1.24003 1.85531 1.25449 0.84075 0.95801 0.94031 1.84027 1.35698 1.15554 1.67615 1.21434 0.93827 0.98090 1.08383 0.91830 0.86138 0.86465 0.86770 0.85051 0.84383 0.81006 0.72239 0.75383 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.40 -10.70 9.48 30.89 0.29 -10.40 16 8 H 0.09 2.27 5.20 -52.49 -0.27 1.99 16 9 O -0.17 -4.76 9.76 0.02 0.00 -4.76 16 10 C 0.14 3.30 6.64 -39.18 -0.26 3.04 16 11 C -0.17 -3.32 9.98 -39.27 -0.39 -3.71 16 12 C -0.08 -1.36 10.02 -39.68 -0.40 -1.76 16 13 C -0.18 -2.83 9.41 -39.06 -0.37 -3.20 16 14 C -0.06 -0.96 5.87 -105.08 -0.62 -1.58 16 15 C 0.03 0.44 9.46 -37.13 -0.35 0.09 16 16 C -0.27 -3.38 9.23 -37.45 -0.35 -3.73 16 17 C 0.47 6.06 7.06 -32.81 -0.23 5.83 16 18 O -0.44 -6.87 16.75 5.03 0.08 -6.78 16 19 C -0.08 -0.91 7.02 -36.85 -0.26 -1.16 16 20 C -0.08 -0.81 10.42 -38.98 -0.41 -1.22 16 21 C -0.24 -2.10 6.16 -104.96 -0.65 -2.75 16 22 C 0.56 4.86 8.33 34.44 0.29 5.14 16 23 O -0.51 -6.19 17.72 -19.28 -0.34 -6.53 16 24 O -0.51 -2.53 13.27 -40.63 -0.54 -3.06 16 25 C 0.08 0.50 11.98 30.63 0.37 0.87 16 26 O -0.14 -1.20 10.40 6.24 0.06 -1.13 16 27 C -0.20 -4.06 8.91 -38.90 -0.35 -4.40 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.11 1.43 6.16 -52.49 -0.32 1.11 16 32 H 0.13 1.92 7.52 -52.49 -0.39 1.53 16 33 H 0.14 1.52 6.00 -52.48 -0.32 1.21 16 34 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.42 0.30 9.11 45.56 0.42 0.72 16 36 H 0.23 0.40 8.06 -52.48 -0.42 -0.02 16 37 H 0.13 2.74 5.63 -52.48 -0.30 2.44 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -33.80 348.08 -5.53 -39.34 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -2.01 Total: 4.34 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -3.77 Total: -17.93 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.76 Total: -23.81 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.73 Total: -22.27 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.80 -5.53 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds