Wall clock time and date at job start Tue Mar 31 2020 15:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99733 * 2 1 4 4 H 1.48499 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46910 * 299.99896 * 3 2 1 6 6 H 1.48500 * 109.47028 * 59.99902 * 3 2 1 7 7 C 1.37866 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00349 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47325 * 59.99872 * 9 7 2 11 11 O 1.45200 * 109.47381 * 180.02562 * 9 7 2 12 12 C 1.34227 * 116.99857 * 209.99882 * 11 9 7 13 13 O 1.20825 * 120.00267 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99861 * 179.97438 * 12 11 9 15 15 H 1.09002 * 109.62716 * 335.23547 * 14 12 11 16 16 C 1.53041 * 109.54714 * 214.99927 * 14 12 11 17 17 C 1.52595 * 109.89880 * 176.54837 * 16 14 12 18 18 C 1.52400 * 110.74391 * 70.06059 * 17 16 14 19 19 C 1.53035 * 109.91415 * 289.92171 * 18 17 16 20 20 S 1.81664 * 109.55162 * 95.48322 * 14 12 11 21 21 O 1.42099 * 108.66292 * 288.48296 * 20 14 12 22 22 O 1.42106 * 108.66529 * 59.72634 * 20 14 12 23 23 C 1.50703 * 109.47015 * 300.00261 * 9 7 2 24 24 C 1.34512 * 125.79257 * 99.71274 * 23 9 7 25 25 C 1.41383 * 106.84125 * 179.89172 * 24 23 9 26 26 C 1.34509 * 106.84238 * 0.37179 * 25 24 23 27 27 O 1.34308 * 108.42089 * 359.77483 * 26 25 24 28 28 H 0.97005 * 120.00003 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.38618 * 296.65435 * 16 14 12 30 30 H 1.09006 * 109.38680 * 56.44690 * 16 14 12 31 31 H 1.09000 * 109.23670 * 190.23407 * 17 16 14 32 32 H 1.08999 * 109.24118 * 309.63423 * 17 16 14 33 33 H 1.09003 * 109.41896 * 169.78387 * 18 17 16 34 34 H 1.08995 * 109.41360 * 50.05740 * 18 17 16 35 35 H 1.08997 * 109.55459 * 303.78905 * 19 18 17 36 36 H 1.09008 * 109.54668 * 183.50137 * 19 18 17 37 37 H 1.08003 * 126.58007 * 0.02562 * 24 23 9 38 38 H 1.08003 * 126.57655 * 180.12425 * 25 24 23 39 39 H 1.08002 * 125.79544 * 179.75211 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 8 2.1947 -3.6027 -0.0015 12 6 1.8038 -4.7387 -0.6002 13 8 0.7098 -4.8085 -1.1082 14 6 2.7301 -5.9268 -0.6400 15 1 3.7630 -5.5887 -0.5560 16 6 2.5431 -6.6780 -1.9602 17 6 3.5371 -7.8326 -2.0461 18 6 3.1759 -8.9308 -1.0532 19 6 3.4387 -8.4490 0.3754 20 16 2.3427 -7.0461 0.7374 21 8 2.7670 -6.4387 1.9500 22 8 0.9941 -7.4751 0.6092 23 6 0.3842 -2.5798 1.2284 24 6 -0.9349 -2.3215 1.2795 25 6 -1.3400 -2.5219 2.6191 26 6 -0.2426 -2.8827 3.3082 27 8 0.7988 -2.9160 2.4608 28 1 -0.4850 0.8401 -0.0004 29 1 1.5274 -7.0703 -2.0124 30 1 2.7101 -5.9941 -2.7924 31 1 3.5221 -8.2450 -3.0550 32 1 4.5380 -7.4620 -1.8250 33 1 3.7815 -9.8146 -1.2541 34 1 2.1214 -9.1845 -1.1613 35 1 4.4778 -8.1336 0.4687 36 1 3.2376 -9.2592 1.0764 37 1 -1.5644 -2.0210 0.4549 38 1 -2.3382 -2.4037 3.0142 39 1 -0.2051 -3.1071 4.3640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646914247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:24 Heat of formation + Delta-G solvation = -138.764950 kcal Electronic energy + Delta-G solvation = -27133.710773 eV Core-core repulsion = 23135.918191 eV Total energy + Delta-G solvation = -3997.792582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30965 -39.91009 -37.59900 -36.75503 -36.06813 -35.85661 -33.34081 -32.28037 -31.66238 -29.73052 -28.35369 -26.64044 -24.60287 -23.01873 -21.28286 -21.00640 -20.40282 -19.37093 -18.88268 -17.65331 -17.12793 -16.87842 -16.58486 -16.43310 -15.66897 -15.46488 -15.11209 -14.78419 -14.66130 -14.42186 -14.17678 -13.85848 -13.28410 -13.12466 -12.83756 -12.18579 -12.11634 -12.03894 -12.03028 -11.88293 -11.73787 -11.61523 -11.53326 -11.31230 -11.22778 -11.14883 -10.99393 -10.76819 -10.48247 -10.37896 -10.20732 -9.86915 -9.44487 -8.81268 -8.62975 -7.23152 -6.23109 -4.41833 -0.25395 2.44425 2.65513 2.81331 3.07365 3.20412 3.27370 3.32890 3.65962 3.77523 3.95635 4.19407 4.21899 4.24654 4.26449 4.46354 4.56329 4.70002 4.95486 5.04103 5.08664 5.17035 5.36458 5.47174 5.51677 5.65775 5.75587 5.88700 5.94870 6.11701 6.36811 6.59423 7.00289 7.10544 7.25994 7.30314 7.65723 7.69885 7.80727 8.22545 8.45166 8.71638 9.24872 10.75586 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.004545 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.882121 B = 6158.776297 C = 7002.228549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.080 0.920 9 C 0.297 3.703 10 H 0.082 0.918 11 O -0.337 6.337 12 C 0.469 3.531 13 O -0.484 6.484 14 C -0.576 4.576 15 H 0.165 0.835 16 C -0.099 4.099 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.603 4.603 20 S 2.422 3.578 21 O -0.916 6.916 22 O -0.913 6.913 23 C 0.015 3.985 24 C -0.174 4.174 25 C -0.220 4.220 26 C -0.082 4.082 27 O -0.173 6.173 28 H 0.269 0.731 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 -15.990 -2.240 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.098 0.902 9 C 0.244 3.756 10 H 0.099 0.901 11 O -0.253 6.253 12 C 0.308 3.692 13 O -0.371 6.371 14 C -0.682 4.682 15 H 0.183 0.817 16 C -0.137 4.137 17 C -0.177 4.177 18 C -0.152 4.152 19 C -0.733 4.733 20 S 2.599 3.401 21 O -0.913 6.913 22 O -0.910 6.910 23 C -0.036 4.036 24 C -0.194 4.194 25 C -0.239 4.239 26 C -0.150 4.150 27 O -0.069 6.069 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.316 -15.757 -1.628 17.053 hybrid contribution 0.608 1.154 -0.323 1.343 sum 6.924 -14.603 -1.950 16.279 Atomic orbital electron populations 1.70049 1.05923 1.27654 1.46407 1.24947 0.95161 0.99564 0.93943 0.86149 0.79970 0.81834 0.77824 1.19266 1.20543 1.20593 1.20909 0.94232 0.87323 1.54446 0.90234 1.19340 0.85618 0.81397 0.89211 0.90053 1.86579 1.48555 1.21452 1.68734 1.21805 0.85559 0.84646 0.77141 1.90681 1.21405 1.82737 1.42311 1.30167 1.10236 1.08650 1.19177 0.81698 1.21320 1.01968 0.96825 0.93586 1.21700 0.99847 0.94917 1.01201 1.21319 1.04236 0.99889 0.89720 1.30295 1.16897 1.19252 1.06832 1.08379 0.77330 0.78177 0.76204 1.93655 1.83357 1.75181 1.39065 1.93624 1.30781 1.80697 1.85914 1.23466 0.94222 1.01116 0.84768 1.21219 0.94692 1.06482 0.96967 1.21688 0.98958 1.08199 0.95094 1.23666 0.86014 1.09564 0.95747 1.84023 1.36514 1.68409 1.18000 0.92124 0.88448 0.88762 0.89080 0.90315 0.89212 0.89390 0.84477 0.84400 0.83978 0.84992 0.79724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.05 10.92 55.43 0.61 -23.45 16 2 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 3 Si 0.92 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.82 8.89 -34.44 -0.31 -15.12 16 8 H 0.08 2.16 7.81 -52.48 -0.41 1.75 16 9 C 0.30 8.06 2.42 -29.03 -0.07 7.99 16 10 H 0.08 2.30 7.15 -51.93 -0.37 1.93 16 11 O -0.34 -8.21 9.85 -41.29 -0.41 -8.61 16 12 C 0.47 9.85 6.92 36.01 0.25 10.10 16 13 O -0.48 -11.25 15.56 -18.75 -0.29 -11.54 16 14 C -0.58 -8.15 2.91 -27.86 -0.08 -8.23 16 15 H 0.17 1.76 8.14 -51.93 -0.42 1.33 16 16 C -0.10 -1.07 4.63 -26.92 -0.12 -1.19 16 17 C -0.14 -0.92 5.61 -27.25 -0.15 -1.07 16 18 C -0.11 -0.74 5.73 -27.02 -0.15 -0.89 16 19 C -0.60 -4.57 6.35 37.18 0.24 -4.33 16 20 S 2.42 34.38 4.66 -107.50 -0.50 33.88 16 21 O -0.92 -16.47 18.10 -57.82 -1.05 -17.52 16 22 O -0.91 -16.03 17.93 -57.82 -1.04 -17.06 16 23 C 0.02 0.42 5.54 -35.62 -0.20 0.22 16 24 C -0.17 -4.51 9.16 -39.70 -0.36 -4.87 16 25 C -0.22 -4.96 10.91 -39.70 -0.43 -5.39 16 26 C -0.08 -1.83 12.09 29.41 0.36 -1.47 16 27 O -0.17 -4.57 10.65 4.42 0.05 -4.52 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.10 1.14 7.84 -51.93 -0.41 0.73 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.61 8.02 -51.93 -0.42 0.19 16 35 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.14 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.14 3.70 7.85 -52.48 -0.41 3.29 16 38 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.19 3.17 8.06 -52.49 -0.42 2.74 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -37.14 345.03 -8.54 -45.68 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.95 Total: 4.49 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -1.14 Total: -22.47 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.61 Total: -23.45 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -2.73 Total: -59.26 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 34.38 SS G_CDS: -0.50 Total: 33.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.14 -8.54 -45.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.082 kcal (2) G-P(sol) polarization free energy of solvation -37.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds