Wall clock time and date at job start Tue Mar 31 2020 15:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99733 * 2 1 4 4 H 1.48499 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46910 * 299.99896 * 3 2 1 6 6 H 1.48500 * 109.47028 * 59.99902 * 3 2 1 7 7 C 1.37866 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99969 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00349 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47325 * 59.99872 * 9 7 2 11 11 O 1.45200 * 109.47381 * 180.02562 * 9 7 2 12 12 C 1.34227 * 116.99857 * 209.99882 * 11 9 7 13 13 O 1.20825 * 120.00267 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99861 * 179.97438 * 12 11 9 15 15 H 1.09002 * 109.62716 * 335.23547 * 14 12 11 16 16 C 1.53041 * 109.54714 * 214.99927 * 14 12 11 17 17 C 1.52595 * 109.89880 * 176.54837 * 16 14 12 18 18 C 1.52400 * 110.74391 * 70.06059 * 17 16 14 19 19 C 1.53035 * 109.91415 * 289.92171 * 18 17 16 20 20 S 1.81664 * 109.55162 * 95.48322 * 14 12 11 21 21 O 1.42099 * 108.66292 * 288.48296 * 20 14 12 22 22 O 1.42106 * 108.66529 * 59.72634 * 20 14 12 23 23 C 1.50703 * 109.47015 * 300.00261 * 9 7 2 24 24 C 1.34512 * 125.79257 * 99.71274 * 23 9 7 25 25 C 1.41383 * 106.84125 * 179.89172 * 24 23 9 26 26 C 1.34509 * 106.84238 * 0.37179 * 25 24 23 27 27 O 1.34308 * 108.42089 * 359.77483 * 26 25 24 28 28 H 0.97005 * 120.00003 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.38618 * 296.65435 * 16 14 12 30 30 H 1.09006 * 109.38680 * 56.44690 * 16 14 12 31 31 H 1.09000 * 109.23670 * 190.23407 * 17 16 14 32 32 H 1.08999 * 109.24118 * 309.63423 * 17 16 14 33 33 H 1.09003 * 109.41896 * 169.78387 * 18 17 16 34 34 H 1.08995 * 109.41360 * 50.05740 * 18 17 16 35 35 H 1.08997 * 109.55459 * 303.78905 * 19 18 17 36 36 H 1.09008 * 109.54668 * 183.50137 * 19 18 17 37 37 H 1.08003 * 126.58007 * 0.02562 * 24 23 9 38 38 H 1.08003 * 126.57655 * 180.12425 * 25 24 23 39 39 H 1.08002 * 125.79544 * 179.75211 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 8 2.1947 -3.6027 -0.0015 12 6 1.8038 -4.7387 -0.6002 13 8 0.7098 -4.8085 -1.1082 14 6 2.7301 -5.9268 -0.6400 15 1 3.7630 -5.5887 -0.5560 16 6 2.5431 -6.6780 -1.9602 17 6 3.5371 -7.8326 -2.0461 18 6 3.1759 -8.9308 -1.0532 19 6 3.4387 -8.4490 0.3754 20 16 2.3427 -7.0461 0.7374 21 8 2.7670 -6.4387 1.9500 22 8 0.9941 -7.4751 0.6092 23 6 0.3842 -2.5798 1.2284 24 6 -0.9349 -2.3215 1.2795 25 6 -1.3400 -2.5219 2.6191 26 6 -0.2426 -2.8827 3.3082 27 8 0.7988 -2.9160 2.4608 28 1 -0.4850 0.8401 -0.0004 29 1 1.5274 -7.0703 -2.0124 30 1 2.7101 -5.9941 -2.7924 31 1 3.5221 -8.2450 -3.0550 32 1 4.5380 -7.4620 -1.8250 33 1 3.7815 -9.8146 -1.2541 34 1 2.1214 -9.1845 -1.1613 35 1 4.4778 -8.1336 0.4687 36 1 3.2376 -9.2592 1.0764 37 1 -1.5644 -2.0210 0.4549 38 1 -2.3382 -2.4037 3.0142 39 1 -0.2051 -3.1071 4.3640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:23 Heat of formation + Delta-G solvation = -166.543130 kcal Electronic energy + Delta-G solvation = -27134.915325 eV Core-core repulsion = 23135.918191 eV Total energy + Delta-G solvation = -3998.997134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.26340 -41.61696 -38.65636 -37.94669 -37.45813 -37.20814 -35.38230 -33.62465 -33.28287 -31.62781 -29.31169 -28.57337 -25.79599 -24.71145 -22.68913 -22.27048 -21.97473 -21.25000 -20.00482 -19.33618 -18.77235 -18.52525 -18.12648 -17.66073 -17.23011 -16.77431 -16.75826 -16.45817 -16.32531 -15.62658 -15.04979 -14.93493 -14.76549 -14.46932 -14.18623 -13.88102 -13.61049 -13.54762 -13.37017 -13.27662 -13.23772 -13.10388 -12.86603 -12.85215 -12.65968 -12.39042 -12.27355 -12.15776 -11.88671 -11.76007 -11.62608 -11.45135 -11.05113 -10.86262 -10.58852 -9.20195 -8.29147 -6.58593 -1.29265 0.95671 0.99694 1.35028 1.39469 1.43793 1.50977 1.59051 1.99488 2.31355 2.35255 2.62896 2.79720 2.96146 3.23866 3.50524 3.67815 3.74106 3.92323 4.02366 4.13194 4.26828 4.33089 4.46173 4.50455 4.54939 4.66857 4.83904 4.95056 5.06087 5.12117 5.18875 5.21229 5.30708 5.36448 5.37115 5.58298 5.70048 5.85070 6.39948 6.42403 6.68352 7.12652 8.69153 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.004545 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.882121 B = 6158.776297 C = 7002.228549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.297 3.703 10 H 0.049 0.951 11 O -0.352 6.352 12 C 0.454 3.546 13 O -0.521 6.521 14 C -0.572 4.572 15 H 0.200 0.800 16 C -0.101 4.101 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.547 4.547 20 S 2.386 3.614 21 O -0.970 6.970 22 O -0.966 6.966 23 C -0.015 4.015 24 C -0.190 4.190 25 C -0.225 4.225 26 C -0.074 4.074 27 O -0.197 6.197 28 H 0.272 0.728 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.171 0.829 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 -17.984 -1.912 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.095 0.905 9 C 0.244 3.756 10 H 0.067 0.933 11 O -0.268 6.268 12 C 0.296 3.704 13 O -0.410 6.410 14 C -0.676 4.676 15 H 0.217 0.783 16 C -0.139 4.139 17 C -0.171 4.171 18 C -0.159 4.159 19 C -0.683 4.683 20 S 2.571 3.429 21 O -0.967 6.967 22 O -0.964 6.964 23 C -0.066 4.066 24 C -0.209 4.209 25 C -0.244 4.244 26 C -0.140 4.140 27 O -0.094 6.094 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.198 0.802 36 H 0.186 0.814 37 H 0.146 0.854 38 H 0.188 0.812 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 9.021 -17.719 -1.299 19.926 hybrid contribution -0.273 1.606 -0.452 1.690 sum 8.748 -16.113 -1.751 18.418 Atomic orbital electron populations 1.70180 1.07320 1.28622 1.46370 1.25892 0.96107 1.02941 0.93011 0.85088 0.78874 0.77021 0.78154 1.18432 1.19253 1.20265 1.21165 0.94268 0.88360 1.55739 0.90468 1.18965 0.85726 0.82541 0.88413 0.93345 1.86556 1.48183 1.22330 1.69717 1.23182 0.86496 0.85183 0.75513 1.90639 1.23385 1.83285 1.43692 1.30453 1.10004 1.05707 1.21480 0.78317 1.21497 1.02776 0.98301 0.91373 1.21782 0.99409 0.92914 1.02977 1.21555 1.04877 1.01266 0.88198 1.30013 1.15615 1.13989 1.08656 1.09184 0.78156 0.80107 0.75490 1.93582 1.83890 1.77556 1.41651 1.93554 1.35242 1.81311 1.86247 1.23442 0.94806 1.03016 0.85329 1.21347 0.94478 1.06650 0.98470 1.22076 1.01042 1.07908 0.93378 1.24751 0.84768 1.07176 0.97337 1.83992 1.38283 1.68970 1.18165 0.91865 0.90478 0.89070 0.86524 0.87429 0.84572 0.90250 0.80224 0.81359 0.85409 0.81157 0.74470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.51 10.92 21.44 0.23 -51.28 16 2 C 0.02 1.34 5.30 84.65 0.45 1.79 16 3 Si 0.99 43.63 29.54 68.60 2.03 45.65 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.56 -32.74 8.89 25.60 0.23 -32.52 16 8 H 0.08 4.40 7.81 -2.91 -0.02 4.38 16 9 C 0.30 17.37 2.42 29.10 0.07 17.44 16 10 H 0.05 3.06 7.15 -2.39 -0.02 3.04 16 11 O -0.35 -18.40 9.85 -49.43 -0.49 -18.89 16 12 C 0.45 20.53 6.92 71.24 0.49 21.02 16 13 O -0.52 -26.62 15.56 21.97 0.34 -26.28 16 14 C -0.57 -16.39 2.91 29.86 0.09 -16.30 16 15 H 0.20 4.03 8.14 -2.39 -0.02 4.01 16 16 C -0.10 -2.12 4.63 30.47 0.14 -1.98 16 17 C -0.13 -1.16 5.61 30.26 0.17 -0.99 16 18 C -0.12 -0.92 5.73 30.41 0.17 -0.74 16 19 C -0.55 -5.60 6.35 71.99 0.46 -5.14 16 20 S 2.39 67.91 4.66 -56.49 -0.26 67.65 16 21 O -0.97 -35.98 18.10 -127.38 -2.31 -38.29 16 22 O -0.97 -35.87 17.93 -127.38 -2.28 -38.16 16 23 C -0.02 -0.89 5.54 24.83 0.14 -0.75 16 24 C -0.19 -10.36 9.16 22.19 0.20 -10.15 16 25 C -0.23 -10.18 10.91 22.19 0.24 -9.94 16 26 C -0.07 -3.26 12.09 66.97 0.81 -2.45 16 27 O -0.20 -10.76 10.65 -1.37 -0.01 -10.77 16 28 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 29 H 0.08 1.90 7.84 -2.39 -0.02 1.89 16 30 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.11 0.40 8.09 -2.39 -0.02 0.38 16 33 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.08 0.83 8.02 -2.39 -0.02 0.81 16 35 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.17 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.13 7.18 7.85 -2.91 -0.02 7.16 16 38 H 0.17 6.19 8.06 -2.91 -0.02 6.17 16 39 H 0.24 7.49 8.06 -2.91 -0.02 7.47 16 Total: -1.00 -92.08 345.03 1.97 -90.10 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 1.07 Total: 20.96 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.66 Total: -40.70 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.23 Total: -51.28 kcal Atomic # 8 Polarization: -127.64 SS G_CDS: -4.75 Total: -132.39 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 67.91 SS G_CDS: -0.26 Total: 67.65 kcal Total: -92.08 1.97 -90.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.439 kcal (2) G-P(sol) polarization free energy of solvation -92.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds