Wall clock time and date at job start Tue Mar 31 2020 15:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48498 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46697 * 300.00046 * 3 2 1 6 6 H 1.48499 * 109.47234 * 59.99915 * 3 2 1 7 7 C 1.37877 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99638 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47415 * 299.99501 * 9 7 2 11 11 O 1.45201 * 109.47127 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00349 * 150.00071 * 11 9 7 13 13 O 1.20825 * 120.00008 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00075 * 180.02562 * 12 11 9 15 15 H 1.09001 * 109.55154 * 325.18392 * 14 12 11 16 16 C 1.53041 * 109.63241 * 85.43211 * 14 12 11 17 17 C 1.52589 * 109.98473 * 183.54781 * 16 14 12 18 18 C 1.52586 * 110.64576 * 290.01337 * 17 16 14 19 19 C 1.53030 * 109.98404 * 69.98904 * 18 17 16 20 20 S 1.81671 * 108.99998 * 296.34881 * 19 18 17 21 21 O 1.42098 * 108.66352 * 168.62984 * 20 19 18 22 22 O 1.42096 * 108.66600 * 299.87702 * 20 19 18 23 23 C 1.50700 * 109.47465 * 60.00120 * 9 7 2 24 24 C 1.34516 * 125.78939 * 264.71623 * 23 9 7 25 25 C 1.41381 * 106.83860 * 179.88720 * 24 23 9 26 26 C 1.34508 * 106.84368 * 0.37180 * 25 24 23 27 27 O 1.34301 * 125.79084 * 85.01965 * 23 9 7 28 28 H 0.97000 * 120.00249 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.38324 * 63.39537 * 16 14 12 30 30 H 1.09000 * 109.38538 * 303.70645 * 16 14 12 31 31 H 1.09002 * 109.23984 * 169.71386 * 17 16 14 32 32 H 1.09003 * 109.23914 * 50.31593 * 17 16 14 33 33 H 1.08997 * 109.38242 * 190.14650 * 18 17 16 34 34 H 1.08996 * 109.38379 * 309.82868 * 18 17 16 35 35 H 1.09001 * 109.55315 * 56.20514 * 19 18 17 36 36 H 1.09004 * 109.54797 * 176.49583 * 19 18 17 37 37 H 1.08001 * 126.57905 * 0.02562 * 24 23 9 38 38 H 1.08004 * 126.57399 * 180.16751 * 25 24 23 39 39 H 1.08000 * 125.79449 * 179.75407 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5563 0.8920 11 8 2.1947 -3.6028 0.0027 12 6 1.8035 -4.7385 0.6017 13 8 0.7090 -4.8081 1.1088 14 6 2.7297 -5.9265 0.6426 15 1 3.3144 -5.9650 -0.2765 16 6 3.6707 -5.8037 1.8434 17 6 4.6699 -6.9569 1.8429 18 6 3.9725 -8.2732 2.1731 19 6 3.0677 -8.6914 1.0119 20 16 1.7559 -7.4512 0.8079 21 8 1.0845 -7.6973 -0.4200 22 8 1.0027 -7.3839 2.0110 23 6 0.3842 -2.5799 -1.2284 24 6 -0.9158 -2.2416 -1.2981 25 6 -1.3277 -2.4708 -2.6310 26 6 -0.2570 -2.9433 -3.2941 27 8 0.7771 -3.0072 -2.4394 28 1 -0.4850 0.8400 -0.0004 29 1 3.0878 -5.8305 2.7639 30 1 4.2095 -4.8580 1.7855 31 1 5.4424 -6.7630 2.5872 32 1 5.1314 -7.0319 0.8583 33 1 4.7214 -9.0463 2.3448 34 1 3.3710 -8.1480 3.0735 35 1 3.6554 -8.7546 0.0960 36 1 2.6216 -9.6620 1.2284 37 1 -1.5270 -1.8648 -0.4913 38 1 -2.3139 -2.3023 -3.0379 39 1 -0.2329 -3.2239 -4.3367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:25 Heat of formation + Delta-G solvation = -165.881884 kcal Electronic energy + Delta-G solvation = -26949.305521 eV Core-core repulsion = 22950.337061 eV Total energy + Delta-G solvation = -3998.968460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.24608 -41.63990 -38.53919 -37.90803 -37.61823 -37.11447 -35.39630 -33.58791 -33.30695 -31.57579 -29.27815 -28.57573 -25.64889 -24.79696 -22.79033 -22.29687 -21.95322 -21.23102 -19.91104 -19.33846 -18.83198 -18.52432 -17.83933 -17.39600 -17.25904 -17.01335 -16.71491 -16.54003 -16.29921 -15.60725 -15.00398 -14.93793 -14.80790 -14.46515 -14.06373 -13.93416 -13.60614 -13.54979 -13.30322 -13.25966 -13.18523 -13.06268 -12.89907 -12.86589 -12.69287 -12.38742 -12.27678 -12.16925 -11.84001 -11.78668 -11.55696 -11.47236 -11.05399 -10.86755 -10.56374 -9.17419 -8.27585 -6.58685 -1.20427 0.89620 1.02325 1.36266 1.39683 1.48236 1.54640 1.60248 2.01677 2.31269 2.34348 2.73807 2.87615 2.97134 3.33665 3.46752 3.69383 3.75449 3.87038 4.01981 4.14460 4.26782 4.35054 4.49411 4.51775 4.55154 4.66057 4.84505 4.94538 5.08610 5.13220 5.20063 5.22875 5.32924 5.36800 5.40415 5.58533 5.70825 5.85926 6.37291 6.42587 6.67884 7.12827 8.69099 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.004416 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.253693 B = 6338.533741 C = 7425.099374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.023 3.977 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.298 3.702 10 H 0.043 0.957 11 O -0.341 6.341 12 C 0.468 3.532 13 O -0.540 6.540 14 C -0.575 4.575 15 H 0.196 0.804 16 C -0.106 4.106 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.554 4.554 20 S 2.404 3.596 21 O -0.982 6.982 22 O -0.958 6.958 23 C -0.017 4.017 24 C -0.189 4.189 25 C -0.229 4.229 26 C -0.069 4.069 27 O -0.195 6.195 28 H 0.272 0.728 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.127 0.873 38 H 0.167 0.833 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.295 -16.127 0.400 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.098 0.902 9 C 0.244 3.756 10 H 0.061 0.939 11 O -0.256 6.256 12 C 0.312 3.688 13 O -0.431 6.431 14 C -0.679 4.679 15 H 0.214 0.786 16 C -0.144 4.144 17 C -0.169 4.169 18 C -0.158 4.158 19 C -0.689 4.689 20 S 2.588 3.412 21 O -0.979 6.979 22 O -0.956 6.956 23 C -0.068 4.068 24 C -0.209 4.209 25 C -0.248 4.248 26 C -0.135 4.135 27 O -0.093 6.093 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.099 0.901 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.145 0.855 38 H 0.185 0.815 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 11.125 -16.116 0.450 19.588 hybrid contribution -0.237 1.684 -0.083 1.702 sum 10.888 -14.432 0.367 18.083 Atomic orbital electron populations 1.70183 1.07398 1.28574 1.46405 1.25900 0.96070 1.02998 0.93081 0.85082 0.78933 0.77038 0.78049 1.18253 1.20271 1.19565 1.21155 0.94279 0.88211 1.55528 0.90246 1.18949 0.85701 0.82608 0.88362 0.93942 1.86510 1.47862 1.22071 1.69146 1.23190 0.85894 0.85485 0.74252 1.90766 1.23982 1.83801 1.44532 1.30703 1.12215 1.11426 1.13600 0.78645 1.21530 0.96355 1.04423 0.92086 1.21801 0.97654 0.90720 1.06769 1.21568 0.99689 0.99404 0.95181 1.30057 1.13894 1.13787 1.11200 1.08696 0.79440 0.78878 0.74165 1.93527 1.73104 1.84028 1.47265 1.93525 1.68821 1.85589 1.47628 1.23374 0.94953 1.02437 0.85997 1.21399 0.94935 1.05938 0.98615 1.22086 1.01486 1.07420 0.93851 1.24738 0.85145 1.06431 0.97198 1.83942 1.39184 1.67112 1.19044 0.91900 0.90417 0.88562 0.86514 0.87560 0.84796 0.90145 0.80518 0.81511 0.85518 0.81510 0.74116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.03 10.50 21.45 0.23 -50.80 16 2 C 0.02 1.26 5.30 84.65 0.45 1.71 16 3 Si 0.99 42.84 29.54 68.60 2.03 44.86 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.56 -31.68 8.89 25.60 0.23 -31.46 16 8 H 0.08 4.37 7.81 -2.91 -0.02 4.35 16 9 C 0.30 17.01 2.41 29.10 0.07 17.08 16 10 H 0.04 2.69 7.15 -2.38 -0.02 2.67 16 11 O -0.34 -17.04 9.84 -48.74 -0.48 -17.52 16 12 C 0.47 21.00 7.06 71.23 0.50 21.50 16 13 O -0.54 -28.57 14.70 27.17 0.40 -28.17 16 14 C -0.57 -16.27 2.91 29.86 0.09 -16.18 16 15 H 0.20 3.96 8.14 -2.39 -0.02 3.94 16 16 C -0.11 -2.17 5.00 30.47 0.15 -2.02 16 17 C -0.13 -1.16 5.63 30.32 0.17 -0.99 16 18 C -0.12 -0.91 5.73 30.47 0.17 -0.74 16 19 C -0.55 -5.62 6.35 71.99 0.46 -5.17 16 20 S 2.40 67.54 4.31 -56.49 -0.24 67.29 16 21 O -0.98 -35.88 18.10 -127.38 -2.31 -38.19 16 22 O -0.96 -35.31 17.08 -121.18 -2.07 -37.38 16 23 C -0.02 -0.96 5.67 24.83 0.14 -0.82 16 24 C -0.19 -10.17 9.05 22.19 0.20 -9.97 16 25 C -0.23 -10.07 10.91 22.19 0.24 -9.83 16 26 C -0.07 -2.83 12.09 66.97 0.81 -2.02 16 27 O -0.20 -9.95 10.63 1.00 0.01 -9.94 16 28 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.08 1.79 8.02 -2.39 -0.02 1.77 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.45 8.09 -2.39 -0.02 0.43 16 33 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.08 0.82 8.02 -2.39 -0.02 0.80 16 35 H 0.18 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.13 7.17 7.51 -2.91 -0.02 7.15 16 38 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 39 H 0.24 6.78 8.06 -2.91 -0.02 6.76 16 Total: -1.00 -90.98 342.90 2.31 -88.67 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.07 Total: 20.08 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.68 Total: -38.91 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.23 Total: -50.80 kcal Atomic # 8 Polarization: -126.75 SS G_CDS: -4.45 Total: -131.19 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 67.54 SS G_CDS: -0.24 Total: 67.29 kcal Total: -90.98 2.31 -88.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.215 kcal (2) G-P(sol) polarization free energy of solvation -90.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds