Wall clock time and date at job start Tue Mar 31 2020 15:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47122 * 0.02562 * 3 2 1 5 5 H 1.48511 * 109.47122 * 119.99838 * 3 2 1 6 6 H 1.48496 * 109.47178 * 239.99813 * 3 2 1 7 7 C 1.37878 * 120.00376 * 179.72663 * 2 1 3 8 8 H 1.07998 * 120.00355 * 173.17959 * 7 2 1 9 9 C 1.50704 * 119.99772 * 353.18110 * 7 2 1 10 10 H 1.09005 * 109.46640 * 325.93274 * 9 7 2 11 11 O 1.45194 * 109.47463 * 85.93004 * 9 7 2 12 12 C 1.34227 * 117.00574 * 209.99887 * 11 9 7 13 13 O 1.20832 * 119.99390 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00352 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.55493 * 325.00534 * 14 12 11 16 16 C 1.53035 * 109.54977 * 85.19608 * 14 12 11 17 17 C 1.52574 * 109.99656 * 183.40525 * 16 14 12 18 18 C 1.52592 * 110.72772 * 290.15745 * 17 16 14 19 19 C 1.53038 * 109.98620 * 69.95208 * 18 17 16 20 20 S 1.81672 * 108.99651 * 296.35064 * 19 18 17 21 21 O 1.42100 * 108.66246 * 299.97208 * 20 19 18 22 22 O 1.42096 * 108.66772 * 168.62729 * 20 19 18 23 23 C 1.50699 * 109.47186 * 205.93798 * 9 7 2 24 24 C 1.34511 * 125.79539 * 95.92655 * 23 9 7 25 25 C 1.41383 * 106.84235 * 179.97438 * 24 23 9 26 26 C 1.34513 * 106.84081 * 0.02562 * 25 24 23 27 27 O 1.34306 * 125.78375 * 275.62131 * 23 9 7 28 28 H 0.97006 * 119.99984 * 174.20449 * 1 2 3 29 29 H 1.08998 * 109.38704 * 303.65886 * 16 14 12 30 30 H 1.09000 * 109.38604 * 63.34307 * 16 14 12 31 31 H 1.08997 * 109.23019 * 169.81219 * 17 16 14 32 32 H 1.09003 * 109.16849 * 50.46055 * 17 16 14 33 33 H 1.08996 * 109.38765 * 309.79150 * 18 17 16 34 34 H 1.08996 * 109.38513 * 190.10380 * 18 17 16 35 35 H 1.08995 * 109.55409 * 176.49750 * 19 18 17 36 36 H 1.08996 * 109.55153 * 56.20057 * 19 18 17 37 37 H 1.08000 * 126.57898 * 359.97274 * 24 23 9 38 38 H 1.07997 * 126.58057 * 179.97438 * 25 24 23 39 39 H 1.08001 * 125.78864 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1028 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0057 8 1 3.0787 -1.1978 -0.1054 9 6 1.2590 -2.4938 0.1669 10 1 0.4038 -2.3428 0.8257 11 8 0.7953 -2.9500 -1.1312 12 6 -0.3361 -3.6718 -1.1551 13 8 -0.9200 -3.9139 -0.1253 14 6 -0.8781 -4.1801 -2.4660 15 1 -0.6792 -3.4501 -3.2507 16 6 -0.2035 -5.5077 -2.8189 17 6 -0.6827 -5.9896 -4.1849 18 6 -2.1427 -6.4286 -4.1211 19 6 -3.0473 -5.2098 -3.9255 20 16 -2.6698 -4.4444 -2.3218 21 8 -2.9074 -5.3982 -1.2956 22 8 -3.3125 -3.1786 -2.2593 23 6 2.1770 -3.5286 0.7647 24 6 2.2636 -3.8437 2.0695 25 6 3.2430 -4.8572 2.1820 26 6 3.6968 -5.1003 0.9393 27 8 3.0434 -4.2968 0.0842 28 1 -0.4850 -0.8358 -0.0848 29 1 0.8774 -5.3695 -2.8412 30 1 -0.4558 -6.2533 -2.0649 31 1 -0.0681 -6.8311 -4.5045 32 1 -0.5827 -5.1782 -4.9059 33 1 -2.2775 -7.1168 -3.2867 34 1 -2.4100 -6.9320 -5.0502 35 1 -4.0910 -5.5235 -3.9432 36 1 -2.8676 -4.4903 -4.7243 37 1 1.6943 -3.4065 2.8764 38 1 3.5656 -5.3423 3.0914 39 1 4.4547 -5.8224 0.6737 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646914254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:31 Heat of formation + Delta-G solvation = -148.267486 kcal Electronic energy + Delta-G solvation = -27068.917136 eV Core-core repulsion = 23070.712494 eV Total energy + Delta-G solvation = -3998.204643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88417 -39.78698 -37.47085 -36.61406 -36.03703 -35.75780 -33.45043 -32.32158 -32.21404 -30.15891 -28.30990 -26.44842 -24.39421 -23.24100 -21.29804 -21.22929 -20.84795 -19.76126 -18.72197 -17.72528 -17.43550 -17.15463 -16.57035 -16.23022 -15.66041 -15.41917 -15.28939 -15.20274 -14.59744 -14.25133 -13.95035 -13.90403 -13.46205 -13.18353 -13.04660 -12.55554 -12.22562 -12.14547 -12.06687 -11.92887 -11.91224 -11.84182 -11.57884 -11.46909 -11.19356 -11.01909 -10.82929 -10.68394 -10.31604 -10.26725 -10.03109 -9.92371 -9.35589 -9.14120 -8.87472 -7.80068 -6.84153 -4.69635 -0.08106 2.37435 2.61811 2.72347 3.04176 3.26479 3.31529 3.35024 3.49694 3.69337 3.84994 3.93996 4.23931 4.30604 4.38443 4.58616 4.60785 4.75207 4.90422 5.06598 5.16733 5.27394 5.30169 5.48906 5.52783 5.54092 5.60012 5.68264 5.82180 5.87178 5.94449 6.31195 6.40802 6.53237 6.70210 7.09510 7.22639 7.51902 7.81838 7.99236 8.29907 8.45366 9.06561 10.49146 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.005129 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.607266 B = 5457.574412 C = 6826.223167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.032 3.968 3 Si 1.080 2.920 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.577 4.577 8 H 0.071 0.929 9 C 0.258 3.742 10 H 0.085 0.915 11 O -0.343 6.343 12 C 0.477 3.523 13 O -0.509 6.509 14 C -0.584 4.584 15 H 0.161 0.839 16 C -0.100 4.100 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.611 4.611 20 S 2.436 3.564 21 O -0.909 6.909 22 O -0.926 6.926 23 C 0.029 3.971 24 C -0.226 4.226 25 C -0.208 4.208 26 C -0.074 4.074 27 O -0.171 6.171 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -12.022 -9.289 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.179 4.179 3 Si 0.904 3.096 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.612 4.612 8 H 0.089 0.911 9 C 0.208 3.792 10 H 0.103 0.897 11 O -0.259 6.259 12 C 0.319 3.681 13 O -0.399 6.399 14 C -0.690 4.690 15 H 0.179 0.821 16 C -0.138 4.138 17 C -0.175 4.175 18 C -0.150 4.150 19 C -0.740 4.740 20 S 2.613 3.387 21 O -0.906 6.906 22 O -0.923 6.923 23 C -0.022 4.022 24 C -0.246 4.246 25 C -0.228 4.228 26 C -0.142 4.142 27 O -0.067 6.067 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.035 -10.227 -8.482 13.327 hybrid contribution 0.785 -1.900 -0.515 2.119 sum -0.250 -12.127 -8.996 15.102 Atomic orbital electron populations 1.70779 1.07040 1.31930 1.39518 1.26398 0.96236 1.03605 0.91656 0.83400 0.74964 0.73915 0.77299 1.20026 1.20564 1.20631 1.21992 0.95448 0.88703 1.55087 0.91124 1.19636 0.90995 0.87689 0.80897 0.89719 1.87206 1.36554 1.60404 1.41695 1.22064 0.81899 0.76209 0.87974 1.90750 1.59640 1.55149 1.34374 1.30537 1.26203 1.07504 1.04796 0.82087 1.21276 1.03106 0.91433 0.97994 1.21713 0.95804 1.02992 0.96989 1.21324 0.93195 0.95427 1.05066 1.30369 1.09731 1.10391 1.23506 1.07995 0.76836 0.76195 0.77629 1.93579 1.82373 1.62652 1.51989 1.93615 1.71317 1.41249 1.86148 1.23411 0.93444 0.93854 0.91462 1.21405 1.04365 1.02307 0.96481 1.21686 1.01249 1.01864 0.97966 1.23822 1.01945 0.99531 0.88889 1.84061 1.43057 1.41697 1.37879 0.91104 0.88403 0.89307 0.89164 0.90265 0.89533 0.89336 0.84554 0.84690 0.83951 0.84141 0.78990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.16 13.55 55.43 0.75 -24.41 16 2 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 3 Si 1.08 23.53 29.91 -169.99 -5.08 18.44 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.58 -15.83 8.68 -34.44 -0.30 -16.13 16 8 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 9 C 0.26 6.83 1.88 -29.03 -0.05 6.77 16 10 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 11 O -0.34 -8.55 9.83 -41.96 -0.41 -8.96 16 12 C 0.48 10.78 7.06 36.00 0.25 11.04 16 13 O -0.51 -12.88 14.69 -24.22 -0.36 -13.24 16 14 C -0.58 -9.35 2.91 -27.87 -0.08 -9.43 16 15 H 0.16 2.13 8.14 -51.93 -0.42 1.71 16 16 C -0.10 -1.23 5.00 -26.93 -0.13 -1.37 16 17 C -0.14 -1.11 5.62 -27.16 -0.15 -1.26 16 18 C -0.11 -0.87 5.73 -26.92 -0.15 -1.02 16 19 C -0.61 -5.49 6.35 37.18 0.24 -5.26 16 20 S 2.44 38.25 4.32 -107.50 -0.46 37.79 16 21 O -0.91 -17.06 17.07 -64.33 -1.10 -18.16 16 22 O -0.93 -18.19 18.10 -57.81 -1.05 -19.24 16 23 C 0.03 0.71 6.17 -35.63 -0.22 0.49 16 24 C -0.23 -4.92 10.81 -39.70 -0.43 -5.35 16 25 C -0.21 -3.76 10.91 -39.70 -0.43 -4.20 16 26 C -0.07 -1.30 12.09 29.42 0.36 -0.95 16 27 O -0.17 -3.76 10.64 2.34 0.02 -3.73 16 28 H 0.28 8.34 6.98 -40.82 -0.28 8.06 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.09 0.69 8.02 -51.93 -0.42 0.28 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.14 2.96 8.06 -52.49 -0.42 2.53 16 38 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 39 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -37.40 346.18 -8.55 -45.95 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.87 Total: 6.24 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -1.21 Total: -25.90 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.75 Total: -24.41 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -2.89 Total: -63.33 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.08 Total: 18.44 kcal Atomic # 16 Polarization: 38.25 SS G_CDS: -0.46 Total: 37.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.40 -8.55 -45.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.319 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds