Wall clock time and date at job start Tue Mar 31 2020 15:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47122 * 0.02562 * 3 2 1 5 5 H 1.48511 * 109.47122 * 119.99838 * 3 2 1 6 6 H 1.48496 * 109.47178 * 239.99813 * 3 2 1 7 7 C 1.37878 * 120.00376 * 179.72663 * 2 1 3 8 8 H 1.07998 * 120.00355 * 173.17959 * 7 2 1 9 9 C 1.50704 * 119.99772 * 353.18110 * 7 2 1 10 10 H 1.09005 * 109.46640 * 325.93274 * 9 7 2 11 11 O 1.45194 * 109.47463 * 85.93004 * 9 7 2 12 12 C 1.34227 * 117.00574 * 209.99887 * 11 9 7 13 13 O 1.20832 * 119.99390 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00352 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.55493 * 325.00534 * 14 12 11 16 16 C 1.53035 * 109.54977 * 85.19608 * 14 12 11 17 17 C 1.52574 * 109.99656 * 183.40525 * 16 14 12 18 18 C 1.52592 * 110.72772 * 290.15745 * 17 16 14 19 19 C 1.53038 * 109.98620 * 69.95208 * 18 17 16 20 20 S 1.81672 * 108.99651 * 296.35064 * 19 18 17 21 21 O 1.42100 * 108.66246 * 299.97208 * 20 19 18 22 22 O 1.42096 * 108.66772 * 168.62729 * 20 19 18 23 23 C 1.50699 * 109.47186 * 205.93798 * 9 7 2 24 24 C 1.34511 * 125.79539 * 95.92655 * 23 9 7 25 25 C 1.41383 * 106.84235 * 179.97438 * 24 23 9 26 26 C 1.34513 * 106.84081 * 0.02562 * 25 24 23 27 27 O 1.34306 * 125.78375 * 275.62131 * 23 9 7 28 28 H 0.97006 * 119.99984 * 174.20449 * 1 2 3 29 29 H 1.08998 * 109.38704 * 303.65886 * 16 14 12 30 30 H 1.09000 * 109.38604 * 63.34307 * 16 14 12 31 31 H 1.08997 * 109.23019 * 169.81219 * 17 16 14 32 32 H 1.09003 * 109.16849 * 50.46055 * 17 16 14 33 33 H 1.08996 * 109.38765 * 309.79150 * 18 17 16 34 34 H 1.08996 * 109.38513 * 190.10380 * 18 17 16 35 35 H 1.08995 * 109.55409 * 176.49750 * 19 18 17 36 36 H 1.08996 * 109.55153 * 56.20057 * 19 18 17 37 37 H 1.08000 * 126.57898 * 359.97274 * 24 23 9 38 38 H 1.07997 * 126.58057 * 179.97438 * 25 24 23 39 39 H 1.08001 * 125.78864 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1028 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0057 8 1 3.0787 -1.1978 -0.1054 9 6 1.2590 -2.4938 0.1669 10 1 0.4038 -2.3428 0.8257 11 8 0.7953 -2.9500 -1.1312 12 6 -0.3361 -3.6718 -1.1551 13 8 -0.9200 -3.9139 -0.1253 14 6 -0.8781 -4.1801 -2.4660 15 1 -0.6792 -3.4501 -3.2507 16 6 -0.2035 -5.5077 -2.8189 17 6 -0.6827 -5.9896 -4.1849 18 6 -2.1427 -6.4286 -4.1211 19 6 -3.0473 -5.2098 -3.9255 20 16 -2.6698 -4.4444 -2.3218 21 8 -2.9074 -5.3982 -1.2956 22 8 -3.3125 -3.1786 -2.2593 23 6 2.1770 -3.5286 0.7647 24 6 2.2636 -3.8437 2.0695 25 6 3.2430 -4.8572 2.1820 26 6 3.6968 -5.1003 0.9393 27 8 3.0434 -4.2968 0.0842 28 1 -0.4850 -0.8358 -0.0848 29 1 0.8774 -5.3695 -2.8412 30 1 -0.4558 -6.2533 -2.0649 31 1 -0.0681 -6.8311 -4.5045 32 1 -0.5827 -5.1782 -4.9059 33 1 -2.2775 -7.1168 -3.2867 34 1 -2.4100 -6.9320 -5.0502 35 1 -4.0910 -5.5235 -3.9432 36 1 -2.8676 -4.4903 -4.7243 37 1 1.6943 -3.4065 2.8764 38 1 3.5656 -5.3423 3.0914 39 1 4.4547 -5.8224 0.6737 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:31 Heat of formation + Delta-G solvation = -176.332607 kcal Electronic energy + Delta-G solvation = -27070.134131 eV Core-core repulsion = 23070.712494 eV Total energy + Delta-G solvation = -3999.421638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.53363 -41.62171 -38.60296 -37.95806 -37.66101 -37.16550 -35.48816 -33.98138 -33.33781 -31.89767 -29.32303 -28.28720 -25.68443 -24.95167 -22.91245 -22.54017 -21.99082 -21.46274 -19.99439 -19.65521 -19.11023 -18.75062 -17.99686 -17.50932 -17.10679 -16.99078 -16.89276 -16.65246 -15.86058 -15.60742 -15.53164 -14.97036 -14.86159 -14.69904 -14.46218 -13.98145 -13.80946 -13.69948 -13.42052 -13.34916 -13.24168 -12.99509 -12.93237 -12.74709 -12.67359 -12.45799 -12.03866 -11.95383 -11.92452 -11.85970 -11.62652 -11.24245 -11.13917 -10.89916 -10.87544 -9.50264 -9.00181 -6.90415 -1.24778 0.73384 0.90938 1.39014 1.48943 1.50932 1.63977 1.72031 1.78974 2.09339 2.41096 2.66667 2.79607 2.93078 3.34614 3.43408 3.63234 3.68873 3.80377 3.91333 3.99460 4.06046 4.17426 4.20085 4.27116 4.45395 4.58746 4.77501 4.81105 4.85963 4.93815 5.05039 5.05824 5.12940 5.27306 5.29760 5.49288 5.60064 5.78796 6.05305 6.17397 6.56073 6.97079 8.28538 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.005129 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.607266 B = 5457.574412 C = 6826.223167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.013 4.013 3 Si 1.128 2.872 4 H -0.276 1.276 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.261 3.739 10 H 0.044 0.956 11 O -0.353 6.353 12 C 0.463 3.537 13 O -0.548 6.548 14 C -0.582 4.582 15 H 0.186 0.814 16 C -0.099 4.099 17 C -0.133 4.133 18 C -0.118 4.118 19 C -0.555 4.555 20 S 2.402 3.598 21 O -0.958 6.958 22 O -0.985 6.985 23 C -0.018 4.018 24 C -0.233 4.233 25 C -0.213 4.213 26 C -0.052 4.052 27 O -0.188 6.188 28 H 0.255 0.745 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.137 0.863 38 H 0.182 0.818 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -14.463 -12.550 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.216 4.216 3 Si 0.945 3.055 4 H -0.200 1.200 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.631 4.631 8 H 0.087 0.913 9 C 0.210 3.790 10 H 0.062 0.938 11 O -0.269 6.269 12 C 0.307 3.693 13 O -0.441 6.441 14 C -0.687 4.687 15 H 0.204 0.796 16 C -0.138 4.138 17 C -0.169 4.169 18 C -0.156 4.156 19 C -0.690 4.690 20 S 2.586 3.414 21 O -0.955 6.955 22 O -0.982 6.982 23 C -0.068 4.068 24 C -0.253 4.253 25 C -0.232 4.232 26 C -0.118 4.118 27 O -0.084 6.084 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.155 0.845 38 H 0.199 0.801 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 0.631 -12.663 -11.684 17.241 hybrid contribution 0.287 -1.418 0.455 1.517 sum 0.918 -14.081 -11.229 18.033 Atomic orbital electron populations 1.70924 1.08230 1.30449 1.43078 1.28043 0.96068 1.07430 0.90018 0.82860 0.74205 0.69489 0.78952 1.20044 1.18578 1.18200 1.22195 0.95424 0.89731 1.55783 0.91283 1.19209 0.90239 0.89128 0.80443 0.93793 1.87047 1.38038 1.61346 1.40507 1.23244 0.80617 0.75040 0.90438 1.90713 1.60243 1.56341 1.36781 1.30731 1.27066 1.09912 1.00983 0.79621 1.21459 1.02491 0.88861 1.00981 1.21804 0.96492 1.04843 0.93811 1.21568 0.92300 0.94512 1.07256 1.30066 1.12003 1.10975 1.15969 1.08740 0.76085 0.75401 0.81151 1.93510 1.82436 1.62670 1.56884 1.93538 1.71911 1.44427 1.88368 1.22980 0.95640 0.95948 0.92279 1.21731 1.04938 1.03014 0.95601 1.22093 1.00111 1.00894 1.00099 1.25018 1.00729 0.97928 0.88110 1.84017 1.43191 1.42237 1.38972 0.93487 0.89101 0.90572 0.86199 0.87874 0.90012 0.84459 0.81303 0.80736 0.84492 0.80051 0.73207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.07 13.55 21.45 0.29 -55.78 16 2 C -0.01 -0.73 5.45 84.66 0.46 -0.27 16 3 Si 1.13 48.46 29.91 68.60 2.05 50.51 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.60 -34.71 8.68 25.60 0.22 -34.49 16 8 H 0.07 3.92 7.82 -2.91 -0.02 3.90 16 9 C 0.26 14.97 1.88 29.10 0.05 15.02 16 10 H 0.04 2.82 6.15 -2.38 -0.01 2.81 16 11 O -0.35 -19.03 9.83 -48.80 -0.48 -19.51 16 12 C 0.46 22.65 7.06 71.23 0.50 23.16 16 13 O -0.55 -30.75 14.69 27.18 0.40 -30.35 16 14 C -0.58 -19.17 2.91 29.86 0.09 -19.08 16 15 H 0.19 4.92 8.14 -2.39 -0.02 4.90 16 16 C -0.10 -2.36 5.00 30.46 0.15 -2.21 16 17 C -0.13 -1.50 5.62 30.32 0.17 -1.33 16 18 C -0.12 -1.16 5.73 30.47 0.17 -0.98 16 19 C -0.55 -7.39 6.35 71.99 0.46 -6.93 16 20 S 2.40 77.29 4.32 -56.49 -0.24 77.05 16 21 O -0.96 -38.19 17.07 -121.16 -2.07 -40.26 16 22 O -0.99 -41.20 18.10 -127.39 -2.31 -43.51 16 23 C -0.02 -0.91 6.17 24.83 0.15 -0.75 16 24 C -0.23 -10.55 10.81 22.19 0.24 -10.31 16 25 C -0.21 -7.34 10.91 22.19 0.24 -7.10 16 26 C -0.05 -1.68 12.09 66.97 0.81 -0.87 16 27 O -0.19 -8.29 10.64 0.65 0.01 -8.29 16 28 H 0.26 16.90 6.98 -92.70 -0.65 16.26 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 1.97 8.03 -2.39 -0.02 1.95 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.76 8.09 -2.39 -0.02 0.75 16 33 H 0.08 0.98 8.02 -2.39 -0.02 0.96 16 34 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.14 6.12 8.06 -2.91 -0.02 6.10 16 38 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 39 H 0.25 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -95.85 346.18 2.57 -93.28 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.19 Total: 23.00 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 3.73 Total: -46.14 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.29 Total: -55.78 kcal Atomic # 8 Polarization: -137.47 SS G_CDS: -4.45 Total: -141.92 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Atomic # 16 Polarization: 77.29 SS G_CDS: -0.24 Total: 77.05 kcal Total: -95.85 2.57 -93.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.053 kcal (2) G-P(sol) polarization free energy of solvation -95.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds