Wall clock time and date at job start Tue Mar 31 2020 15:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47067 * 240.00538 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47187 * 120.00381 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38895 * 120.07199 * 354.46690 * 10 9 7 12 12 C 1.38079 * 119.93574 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.06372 * 359.97029 * 12 11 10 14 14 C 1.38283 * 120.14307 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.96713 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47070 * 89.99920 * 15 14 13 17 17 N 1.30269 * 126.28350 * 90.02182 * 16 15 14 18 18 N 1.28671 * 109.38067 * 179.97438 * 17 16 15 19 19 C 1.30276 * 109.37992 * 0.02562 * 18 17 16 20 20 C 1.50700 * 126.28249 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47120 * 89.97483 * 20 19 18 22 22 F 1.39906 * 109.46973 * 60.00136 * 21 20 19 23 23 F 1.39893 * 109.47505 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47311 * 300.00447 * 21 20 19 25 25 O 1.34357 * 107.43523 * 359.75682 * 19 18 17 26 26 C 1.38123 * 120.06287 * 359.75578 * 14 13 12 27 27 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.03300 * 359.97438 * 11 10 9 29 29 H 1.07996 * 119.97037 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.92651 * 180.02562 * 13 12 11 31 31 H 1.09004 * 109.46934 * 209.99551 * 15 14 13 32 32 H 1.08993 * 109.47135 * 329.99783 * 15 14 13 33 33 H 1.08998 * 109.47230 * 209.97805 * 20 19 18 34 34 H 1.09003 * 109.47302 * 329.97937 * 20 19 18 35 35 H 1.08005 * 120.02985 * 180.27821 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4573 -3.4396 0.0921 12 6 4.2024 -4.5971 0.1997 13 6 3.5685 -5.8205 0.3213 14 6 2.1875 -5.8887 0.3351 15 6 1.5010 -7.2236 0.4684 16 6 1.2795 -7.5311 1.9270 17 7 0.2312 -7.2122 2.6315 18 7 0.3832 -7.6335 3.8378 19 6 1.5338 -8.2352 3.9438 20 6 2.0963 -8.8709 5.1890 21 6 1.6648 -10.3374 5.2524 22 9 2.1449 -11.0139 4.1257 23 9 2.1875 -10.9278 6.4079 24 9 0.2681 -10.4118 5.2809 25 8 2.1248 -8.1890 2.7381 26 6 1.4366 -4.7339 0.2324 27 1 -0.4850 0.8401 0.0004 28 1 3.9528 -2.4847 -0.0032 29 1 5.2812 -4.5471 0.1897 30 1 4.1535 -6.7244 0.4057 31 1 0.5405 -7.1911 -0.0460 32 1 2.1250 -7.9990 0.0243 33 1 3.1845 -8.8130 5.1667 34 1 1.7223 -8.3439 6.0668 35 1 0.3580 -4.7873 0.2478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647188701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:35 Heat of formation + Delta-G solvation = -117.766913 kcal Electronic energy + Delta-G solvation = -26608.254539 eV Core-core repulsion = 21966.364560 eV Total energy + Delta-G solvation = -4641.889979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 5.48 seconds Orbital eigenvalues (eV) -50.56309 -48.08745 -48.00389 -44.39093 -39.20402 -36.92039 -36.31841 -34.48691 -32.81208 -32.29095 -29.81345 -29.12424 -26.92234 -25.34597 -24.73642 -23.04645 -22.54720 -21.73254 -20.85592 -19.08967 -18.98019 -18.39815 -17.93475 -17.31210 -16.94456 -16.91919 -15.44451 -15.26574 -15.10341 -14.87400 -14.71993 -14.60616 -14.48399 -14.44654 -14.16613 -14.15305 -13.83786 -13.60592 -13.45895 -13.02761 -12.69677 -12.64261 -12.46625 -12.19705 -11.97089 -11.69820 -11.39896 -11.11013 -11.03117 -10.88842 -10.77084 -10.52774 -9.74340 -9.43010 -8.90872 -8.29646 -7.37117 -6.50426 -4.10216 0.81059 1.66164 2.05419 2.11160 2.23127 2.44382 3.09285 3.10317 3.13750 3.20659 3.26734 3.49876 3.84879 3.91160 4.13692 4.40874 4.46245 4.61070 4.83226 4.97330 5.03750 5.18042 5.20142 5.32448 5.40868 5.59210 5.64607 5.79263 6.02810 6.21449 6.48495 6.76359 6.94713 7.07705 7.22136 7.32413 7.65136 7.93022 8.13670 8.94213 9.62264 10.67018 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002433 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.721404 B =11506.632447 C =11856.197250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.173 6.173 10 C 0.152 3.848 11 C -0.226 4.226 12 C -0.075 4.075 13 C -0.201 4.201 14 C -0.065 4.065 15 C 0.020 3.980 16 C 0.204 3.796 17 N -0.280 5.280 18 N -0.249 5.249 19 C 0.123 3.877 20 C -0.062 4.062 21 C 0.460 3.540 22 F -0.178 7.178 23 F -0.174 7.174 24 F -0.171 7.171 25 O -0.213 6.213 26 C -0.167 4.167 27 H 0.272 0.728 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -18.651 7.757 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.076 6.076 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.093 4.093 13 C -0.220 4.220 14 C -0.066 4.066 15 C -0.018 4.018 16 C -0.005 4.005 17 N -0.127 5.127 18 N -0.097 5.097 19 C -0.088 4.088 20 C -0.102 4.102 21 C 0.405 3.595 22 F -0.159 7.159 23 F -0.155 7.155 24 F -0.152 7.152 25 O -0.092 6.092 26 C -0.187 4.187 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.439 -17.971 8.038 20.424 hybrid contribution 1.670 0.218 -0.212 1.697 sum 7.109 -17.753 7.826 20.663 Atomic orbital electron populations 1.70032 1.05978 1.27957 1.45311 1.25306 0.95857 0.98879 0.96382 0.85774 0.78727 0.79697 0.79201 1.19439 1.20186 1.19479 1.21281 0.91769 0.80759 1.53291 0.89076 1.83988 1.34243 1.11385 1.77976 1.19290 0.90230 0.88082 0.92647 1.21254 0.93859 0.99131 1.10281 1.20714 0.98579 0.92158 0.97827 1.20442 0.93105 0.97340 1.11158 1.18844 0.93385 0.91740 1.02612 1.19206 1.04276 0.96800 0.81559 1.28242 0.84375 0.90911 0.97021 1.74549 1.21687 1.19174 0.97275 1.74434 1.13749 1.09510 1.12009 1.26583 0.91579 1.03671 0.86951 1.21175 1.05782 0.89776 0.93429 1.20136 0.75804 0.89581 0.74018 1.93243 1.87950 1.82603 1.52102 1.93230 1.86513 1.85922 1.49826 1.93276 1.28971 1.96892 1.96060 1.84776 1.45615 1.59307 1.19454 1.20092 0.99731 0.89708 1.09150 0.91818 0.85373 0.87178 0.87440 0.85946 0.87516 0.83849 0.82648 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.85 9.49 30.88 0.29 -10.56 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.86 9.76 0.04 0.00 -4.86 16 10 C 0.15 3.56 6.65 -39.11 -0.26 3.30 16 11 C -0.23 -4.72 9.17 -39.40 -0.36 -5.08 16 12 C -0.07 -1.29 10.04 -39.61 -0.40 -1.69 16 13 C -0.20 -3.21 9.70 -39.53 -0.38 -3.59 16 14 C -0.06 -1.07 5.11 -104.65 -0.54 -1.60 16 15 C 0.02 0.25 5.97 -29.04 -0.17 0.08 16 16 C 0.20 2.99 7.71 -12.94 -0.10 2.89 16 17 N -0.28 -4.76 12.22 32.55 0.40 -4.36 16 18 N -0.25 -3.88 12.22 32.55 0.40 -3.49 16 19 C 0.12 1.52 7.21 -12.94 -0.09 1.42 16 20 C -0.06 -0.44 5.89 -27.88 -0.16 -0.60 16 21 C 0.46 3.81 3.15 37.16 0.12 3.92 16 22 F -0.18 -1.72 17.02 2.25 0.04 -1.68 16 23 F -0.17 -1.31 17.32 2.25 0.04 -1.27 16 24 F -0.17 -1.78 17.02 2.25 0.04 -1.75 16 25 O -0.21 -2.83 10.87 5.39 0.06 -2.77 16 26 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.13 2.67 5.64 -52.48 -0.30 2.38 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.38 8.09 -51.93 -0.42 0.96 16 32 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.16 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -33.27 332.00 -3.48 -36.76 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.66 Total: 1.74 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.53 Total: -14.28 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 1.55 Total: -32.06 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.06 Total: -7.62 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.12 Total: -4.70 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.27 -3.48 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647188701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.012 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.48 seconds