Wall clock time and date at job start Tue Mar 31 2020 15:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47067 * 240.00538 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47187 * 120.00381 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00502 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38895 * 120.07199 * 354.46690 * 10 9 7 12 12 C 1.38079 * 119.93574 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.06372 * 359.97029 * 12 11 10 14 14 C 1.38283 * 120.14307 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.96713 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47070 * 89.99920 * 15 14 13 17 17 N 1.30269 * 126.28350 * 90.02182 * 16 15 14 18 18 N 1.28671 * 109.38067 * 179.97438 * 17 16 15 19 19 C 1.30276 * 109.37992 * 0.02562 * 18 17 16 20 20 C 1.50700 * 126.28249 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47120 * 89.97483 * 20 19 18 22 22 F 1.39906 * 109.46973 * 60.00136 * 21 20 19 23 23 F 1.39893 * 109.47505 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47311 * 300.00447 * 21 20 19 25 25 O 1.34357 * 107.43523 * 359.75682 * 19 18 17 26 26 C 1.38123 * 120.06287 * 359.75578 * 14 13 12 27 27 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.03300 * 359.97438 * 11 10 9 29 29 H 1.07996 * 119.97037 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.92651 * 180.02562 * 13 12 11 31 31 H 1.09004 * 109.46934 * 209.99551 * 15 14 13 32 32 H 1.08993 * 109.47135 * 329.99783 * 15 14 13 33 33 H 1.08998 * 109.47230 * 209.97805 * 20 19 18 34 34 H 1.09003 * 109.47302 * 329.97937 * 20 19 18 35 35 H 1.08005 * 120.02985 * 180.27821 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4573 -3.4396 0.0921 12 6 4.2024 -4.5971 0.1997 13 6 3.5685 -5.8205 0.3213 14 6 2.1875 -5.8887 0.3351 15 6 1.5010 -7.2236 0.4684 16 6 1.2795 -7.5311 1.9270 17 7 0.2312 -7.2122 2.6315 18 7 0.3832 -7.6335 3.8378 19 6 1.5338 -8.2352 3.9438 20 6 2.0963 -8.8709 5.1890 21 6 1.6648 -10.3374 5.2524 22 9 2.1449 -11.0139 4.1257 23 9 2.1875 -10.9278 6.4079 24 9 0.2681 -10.4118 5.2809 25 8 2.1248 -8.1890 2.7381 26 6 1.4366 -4.7339 0.2324 27 1 -0.4850 0.8401 0.0004 28 1 3.9528 -2.4847 -0.0032 29 1 5.2812 -4.5471 0.1897 30 1 4.1535 -6.7244 0.4057 31 1 0.5405 -7.1911 -0.0460 32 1 2.1250 -7.9990 0.0243 33 1 3.1845 -8.8130 5.1667 34 1 1.7223 -8.3439 6.0668 35 1 0.3580 -4.7873 0.2478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647188701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:29 Heat of formation + Delta-G solvation = -142.917859 kcal Electronic energy + Delta-G solvation = -26609.345166 eV Core-core repulsion = 21966.364560 eV Total energy + Delta-G solvation = -4642.980606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -51.23978 -48.73807 -48.72710 -45.45218 -40.84312 -38.55879 -37.39989 -35.46965 -34.34726 -33.76445 -31.17406 -30.50811 -28.17688 -27.25312 -25.57029 -24.20265 -23.52212 -23.16485 -22.37984 -19.81561 -19.66760 -19.60017 -19.20297 -18.89361 -18.19015 -17.89484 -16.78383 -16.54053 -16.19476 -16.15055 -15.99452 -15.62831 -15.47507 -15.39610 -15.13359 -15.10804 -14.86164 -14.84678 -14.53725 -14.15858 -14.02774 -13.67028 -13.63704 -13.35714 -13.22753 -13.07555 -12.96619 -12.60164 -12.47387 -12.28491 -12.16982 -12.10926 -11.27470 -10.83519 -10.79162 -9.77819 -9.05170 -8.47977 -6.17173 -0.19583 0.35035 0.68370 0.99792 1.09629 1.34136 1.45035 1.50799 1.67999 2.16623 2.35062 2.62654 2.78193 2.88558 3.05111 3.18866 3.31610 3.40128 3.65808 3.82103 4.00494 4.09241 4.19737 4.21424 4.31742 4.40302 4.43233 4.50748 4.63555 4.72344 4.99429 5.09637 5.23886 5.58834 5.65649 5.69598 6.00237 6.15445 6.96194 7.06476 7.76849 8.75070 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002433 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.721404 B =11506.632447 C =11856.197250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.110 3.890 11 C -0.237 4.237 12 C -0.071 4.071 13 C -0.173 4.173 14 C -0.053 4.053 15 C 0.023 3.977 16 C 0.200 3.800 17 N -0.323 5.323 18 N -0.291 5.291 19 C 0.142 3.858 20 C -0.060 4.060 21 C 0.463 3.537 22 F -0.186 7.186 23 F -0.167 7.167 24 F -0.187 7.187 25 O -0.209 6.209 26 C -0.184 4.184 27 H 0.273 0.727 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.183 0.817 34 H 0.180 0.820 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 -21.042 8.429 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.140 6.140 10 C 0.059 3.941 11 C -0.257 4.257 12 C -0.089 4.089 13 C -0.191 4.191 14 C -0.055 4.055 15 C -0.014 4.014 16 C -0.010 4.010 17 N -0.169 5.169 18 N -0.137 5.137 19 C -0.070 4.070 20 C -0.098 4.098 21 C 0.408 3.592 22 F -0.167 7.167 23 F -0.148 7.148 24 F -0.169 7.169 25 O -0.088 6.088 26 C -0.204 4.204 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.176 0.824 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.200 0.800 34 H 0.198 0.802 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.111 -20.424 8.721 24.004 hybrid contribution 0.683 0.513 -0.333 0.917 sum 9.794 -19.911 8.387 23.721 Atomic orbital electron populations 1.70192 1.08121 1.28897 1.48724 1.26622 0.96832 1.02852 0.95826 0.84647 0.77388 0.74186 0.80000 1.17879 1.19761 1.18189 1.21797 0.92544 0.81388 1.53365 0.87917 1.83953 1.35991 1.12611 1.81408 1.19888 0.91747 0.87898 0.94517 1.21398 0.92960 1.00580 1.10730 1.21189 1.00514 0.91144 0.96019 1.21088 0.92897 0.98654 1.06473 1.19214 0.93998 0.92103 1.00139 1.19373 1.05521 0.95603 0.80949 1.28405 0.84213 0.90920 0.97485 1.74482 1.23526 1.20514 0.98332 1.74367 1.15789 1.11668 1.11908 1.27514 0.90404 1.01345 0.87706 1.21597 1.08047 0.88447 0.91723 1.20236 0.74992 0.90093 0.73908 1.93230 1.87933 1.82935 1.52627 1.93247 1.86289 1.85873 1.49381 1.93252 1.30505 1.97003 1.96126 1.84787 1.45233 1.59130 1.19628 1.20289 0.99633 0.90370 1.10093 0.91839 0.86207 0.83112 0.82436 0.85096 0.82889 0.79950 0.80217 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.17 13.67 21.61 0.30 -56.88 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 42.70 29.55 68.60 2.03 44.73 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.41 -24.12 9.49 67.92 0.64 -23.47 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -14.07 9.76 -22.78 -0.22 -14.29 16 10 C 0.11 5.38 6.65 22.58 0.15 5.53 16 11 C -0.24 -9.87 9.17 22.39 0.21 -9.66 16 12 C -0.07 -2.18 10.04 22.25 0.22 -1.96 16 13 C -0.17 -4.63 9.70 22.30 0.22 -4.41 16 14 C -0.05 -1.63 5.11 -19.88 -0.10 -1.73 16 15 C 0.02 0.51 5.97 29.10 0.17 0.69 16 16 C 0.20 5.41 7.71 88.34 0.68 6.09 16 17 N -0.32 -10.84 12.22 -165.50 -2.02 -12.86 16 18 N -0.29 -8.86 12.22 -165.51 -2.02 -10.88 16 19 C 0.14 3.14 7.21 88.34 0.64 3.78 16 20 C -0.06 -0.62 5.89 29.85 0.18 -0.45 16 21 C 0.46 6.43 3.15 71.98 0.23 6.66 16 22 F -0.19 -3.09 17.02 44.97 0.77 -2.33 16 23 F -0.17 -2.04 17.32 44.97 0.78 -1.26 16 24 F -0.19 -3.66 17.02 44.97 0.77 -2.89 16 25 O -0.21 -4.83 10.87 -3.63 -0.04 -4.87 16 26 C -0.18 -7.69 9.65 22.39 0.22 -7.47 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.13 2.70 8.09 -2.38 -0.02 2.68 16 32 H 0.15 1.99 8.08 -2.39 -0.02 1.97 16 33 H 0.18 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.18 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -80.95 332.00 5.41 -75.54 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.17 Total: 13.30 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.91 Total: -27.30 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -3.75 Total: -80.62 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.26 Total: -19.16 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.31 Total: -6.48 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -80.95 5.41 -75.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647188701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.382 kcal (2) G-P(sol) polarization free energy of solvation -80.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds