Wall clock time and date at job start Tue Mar 31 2020 15:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86805 * 119.99638 * 2 1 4 4 H 1.48498 * 109.47441 * 270.00566 * 3 2 1 5 5 H 1.48508 * 109.47078 * 30.00298 * 3 2 1 6 6 H 1.48495 * 109.47123 * 149.99894 * 3 2 1 7 7 C 1.38763 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00439 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00171 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00167 * 180.02562 * 9 7 2 11 11 N 1.32298 * 118.79292 * 180.02562 * 10 9 7 12 12 C 1.33031 * 120.57900 * 179.97438 * 11 10 9 13 13 C 1.41013 * 118.90389 * 0.02562 * 12 11 10 14 14 C 1.41172 * 106.99487 * 180.02562 * 13 12 11 15 15 N 1.30268 * 108.49354 * 359.74620 * 14 13 12 16 16 N 1.36377 * 134.55852 * 180.02562 * 12 11 10 17 17 C 1.46499 * 125.87590 * 359.95088 * 16 12 11 18 18 C 1.50693 * 109.47329 * 89.99737 * 17 16 12 19 19 C 1.38233 * 120.00207 * 89.99403 * 18 17 16 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 C 1.38238 * 119.99693 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00067 * 0.02562 * 22 21 20 24 24 C 1.40739 * 118.41008 * 359.97438 * 13 12 11 25 25 O 1.35368 * 120.73386 * 180.02562 * 24 13 12 26 26 N 1.32482 * 118.53227 * 0.02562 * 24 13 12 27 27 H 0.96996 * 120.00413 * 359.97438 * 1 2 3 28 28 H 1.07996 * 125.75179 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.46981 * 329.99726 * 17 16 12 30 30 H 1.09001 * 109.46676 * 209.99540 * 17 16 12 31 31 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 32 32 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 33 33 H 1.07997 * 120.00460 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.99624 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.00008 * 180.02562 * 23 22 21 36 36 H 0.96702 * 113.99933 * 90.00275 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0467 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4404 0.7000 7 6 2.0096 -1.2017 -0.0005 8 1 1.4697 -2.1371 -0.0014 9 16 3.7716 -1.2016 -0.0012 10 6 4.0777 -2.9367 -0.0025 11 7 5.3302 -3.3628 -0.0028 12 6 5.6020 -4.6651 -0.0032 13 6 4.5328 -5.5845 -0.0040 14 6 5.1003 -6.8772 -0.0037 15 7 6.3976 -6.7590 -0.0083 16 7 6.7487 -5.4032 -0.0031 17 6 8.1131 -4.8697 -0.0034 18 6 8.5811 -4.6863 1.4172 19 6 9.2317 -5.7171 2.0692 20 6 9.6660 -5.5468 3.3704 21 6 9.4451 -4.3476 4.0216 22 6 8.7902 -3.3185 3.3712 23 6 8.3558 -3.4887 2.0700 24 6 3.2180 -5.0825 -0.0036 25 8 2.1567 -5.9228 -0.0038 26 7 3.0419 -3.7695 -0.0032 27 1 -0.4850 0.8400 0.0004 28 1 4.5513 -7.8072 -0.0037 29 1 8.1273 -3.9087 -0.5176 30 1 8.7755 -5.5665 -0.5171 31 1 9.4049 -6.6538 1.5603 32 1 10.1783 -6.3506 3.8783 33 1 9.7848 -4.2144 5.0380 34 1 8.6179 -2.3814 3.8798 35 1 7.8446 -2.6846 1.5617 36 1 1.8484 -6.1673 0.8795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652114707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:46 Heat of formation + Delta-G solvation = 104.086056 kcal Electronic energy + Delta-G solvation = -24151.678521 eV Core-core repulsion = 20536.311171 eV Total energy + Delta-G solvation = -3615.367350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58934 -39.38827 -38.56767 -37.03435 -34.17677 -32.80204 -32.30506 -30.98931 -30.49549 -29.77979 -26.44193 -25.98549 -24.22904 -23.12893 -22.61929 -21.83136 -20.62651 -19.02303 -18.20166 -17.46492 -16.99237 -16.94031 -15.84100 -15.58851 -15.34840 -15.19473 -14.98738 -14.89449 -14.16288 -14.04153 -13.50677 -13.39781 -13.09846 -12.74348 -12.64888 -12.37569 -12.04879 -11.71272 -11.40356 -11.38400 -11.28761 -11.10600 -10.95225 -10.51146 -10.39938 -9.87613 -9.49991 -9.19123 -9.02898 -9.00571 -8.97377 -8.63260 -8.49750 -7.31255 -6.53706 -4.30275 0.81531 1.08520 1.31698 1.72725 2.13285 2.56538 2.63002 3.08486 3.16128 3.20664 3.64080 3.75214 4.00002 4.10440 4.26969 4.51548 4.59699 4.76604 4.85070 4.87011 4.89953 5.01189 5.04472 5.13866 5.31264 5.41153 5.46078 5.49028 5.58011 5.83996 5.95676 6.15975 6.32805 6.41350 6.46960 6.54044 6.86288 6.90572 7.47853 7.58399 7.71591 7.76964 8.54122 8.63583 8.84501 10.54010 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.004022 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.958531 B = 6959.451890 C = 8554.030714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.102 3.898 3 Si 0.840 3.160 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.129 0.871 9 S 0.121 5.879 10 C 0.353 3.647 11 N -0.556 5.556 12 C 0.380 3.620 13 C -0.340 4.340 14 C 0.114 3.886 15 N -0.265 5.265 16 N -0.386 5.386 17 C 0.187 3.813 18 C -0.116 4.116 19 C -0.094 4.094 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.089 4.089 24 C 0.453 3.547 25 O -0.475 6.475 26 N -0.539 5.539 27 H 0.277 0.723 28 H 0.193 0.807 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.701 -10.186 4.863 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.110 4.110 3 Si 0.664 3.336 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.161 1.161 7 C -0.686 4.686 8 H 0.147 0.853 9 S 0.365 5.635 10 C -0.018 4.018 11 N -0.288 5.288 12 C 0.128 3.872 13 C -0.360 4.360 14 C -0.083 4.083 15 N -0.079 5.079 16 N -0.177 5.177 17 C 0.066 3.934 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.108 4.108 24 C 0.248 3.752 25 O -0.283 6.283 26 N -0.268 5.268 27 H 0.087 0.913 28 H 0.210 0.790 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 17.374 -8.489 4.234 19.795 hybrid contribution -1.497 -0.854 0.513 1.798 sum 15.877 -9.343 4.748 19.024 Atomic orbital electron populations 1.69878 1.05848 1.28213 1.44695 1.24761 0.94628 0.98539 0.93058 0.87045 0.81891 0.84210 0.80480 1.18475 1.18778 1.16096 1.22997 0.87728 0.99827 1.58070 0.85301 1.83097 1.10739 0.89561 1.80144 1.25116 0.83443 1.01726 0.91558 1.67663 1.21605 1.12027 1.27489 1.18997 0.86610 0.89499 0.92056 1.20070 0.95136 0.95770 1.24991 1.23575 0.90696 0.97196 0.96846 1.76838 1.15045 0.94178 1.21809 1.48200 1.03512 1.01604 1.64391 1.20445 0.78682 1.00453 0.93784 1.20097 1.00276 0.94813 0.96530 1.21061 0.97277 0.98061 0.94845 1.21112 1.01003 0.97647 0.95008 1.21208 0.98637 0.93596 0.99729 1.21200 0.98737 0.99316 0.94978 1.21285 0.97294 0.97327 0.94863 1.19046 0.83603 0.86414 0.86099 1.84593 1.47406 1.62287 1.33980 1.68478 1.35103 1.02300 1.20883 0.91290 0.79048 0.87814 0.88220 0.85916 0.86110 0.86159 0.85815 0.85063 0.73401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.06 13.96 55.49 0.77 -23.29 16 2 C 0.10 2.74 5.50 -17.47 -0.10 2.65 16 3 Si 0.84 18.89 27.73 -169.99 -4.71 14.17 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.24 -5.06 6.74 56.52 0.38 -4.68 16 7 C -0.54 -14.67 9.78 30.93 0.30 -14.36 16 8 H 0.13 3.86 6.71 -52.49 -0.35 3.51 16 9 S 0.12 2.84 19.79 -107.50 -2.13 0.71 16 10 C 0.35 8.01 7.83 -90.76 -0.71 7.30 16 11 N -0.56 -11.46 10.42 -12.79 -0.13 -11.59 16 12 C 0.38 7.10 8.04 -156.26 -1.26 5.84 16 13 C -0.34 -5.99 6.19 -106.79 -0.66 -6.65 16 14 C 0.11 1.62 12.05 -17.10 -0.21 1.42 16 15 N -0.27 -3.99 12.45 30.81 0.38 -3.60 16 16 N -0.39 -6.09 3.63 -61.63 -0.22 -6.32 16 17 C 0.19 2.36 6.56 -5.20 -0.03 2.32 16 18 C -0.12 -1.45 5.46 -104.63 -0.57 -2.02 16 19 C -0.09 -1.05 9.70 -39.58 -0.38 -1.44 16 20 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.09 -1.16 9.70 -39.58 -0.38 -1.55 16 24 C 0.45 8.61 7.89 -16.33 -0.13 8.49 16 25 O -0.48 -7.37 13.58 -17.79 -0.24 -7.61 16 26 N -0.54 -12.29 8.41 -13.22 -0.11 -12.40 16 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 30 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.41 4.07 9.06 45.56 0.41 4.48 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -32.47 338.37 -9.09 -41.56 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -2.47 Total: 6.42 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -5.32 Total: -3.14 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.69 Total: -57.21 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.24 Total: -7.61 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.13 Total: 0.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.47 -9.09 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652114707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.642 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds