Wall clock time and date at job start Tue Mar 31 2020 15:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86805 * 119.99638 * 2 1 4 4 H 1.48498 * 109.47441 * 270.00566 * 3 2 1 5 5 H 1.48508 * 109.47078 * 30.00298 * 3 2 1 6 6 H 1.48495 * 109.47123 * 149.99894 * 3 2 1 7 7 C 1.38763 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00439 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00171 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00167 * 180.02562 * 9 7 2 11 11 N 1.32298 * 118.79292 * 180.02562 * 10 9 7 12 12 C 1.33031 * 120.57900 * 179.97438 * 11 10 9 13 13 C 1.41013 * 118.90389 * 0.02562 * 12 11 10 14 14 C 1.41172 * 106.99487 * 180.02562 * 13 12 11 15 15 N 1.30268 * 108.49354 * 359.74620 * 14 13 12 16 16 N 1.36377 * 134.55852 * 180.02562 * 12 11 10 17 17 C 1.46499 * 125.87590 * 359.95088 * 16 12 11 18 18 C 1.50693 * 109.47329 * 89.99737 * 17 16 12 19 19 C 1.38233 * 120.00207 * 89.99403 * 18 17 16 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 C 1.38238 * 119.99693 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00067 * 0.02562 * 22 21 20 24 24 C 1.40739 * 118.41008 * 359.97438 * 13 12 11 25 25 O 1.35368 * 120.73386 * 180.02562 * 24 13 12 26 26 N 1.32482 * 118.53227 * 0.02562 * 24 13 12 27 27 H 0.96996 * 120.00413 * 359.97438 * 1 2 3 28 28 H 1.07996 * 125.75179 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.46981 * 329.99726 * 17 16 12 30 30 H 1.09001 * 109.46676 * 209.99540 * 17 16 12 31 31 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 32 32 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 33 33 H 1.07997 * 120.00460 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.99624 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.00008 * 180.02562 * 23 22 21 36 36 H 0.96702 * 113.99933 * 90.00275 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0467 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4404 0.7000 7 6 2.0096 -1.2017 -0.0005 8 1 1.4697 -2.1371 -0.0014 9 16 3.7716 -1.2016 -0.0012 10 6 4.0777 -2.9367 -0.0025 11 7 5.3302 -3.3628 -0.0028 12 6 5.6020 -4.6651 -0.0032 13 6 4.5328 -5.5845 -0.0040 14 6 5.1003 -6.8772 -0.0037 15 7 6.3976 -6.7590 -0.0083 16 7 6.7487 -5.4032 -0.0031 17 6 8.1131 -4.8697 -0.0034 18 6 8.5811 -4.6863 1.4172 19 6 9.2317 -5.7171 2.0692 20 6 9.6660 -5.5468 3.3704 21 6 9.4451 -4.3476 4.0216 22 6 8.7902 -3.3185 3.3712 23 6 8.3558 -3.4887 2.0700 24 6 3.2180 -5.0825 -0.0036 25 8 2.1567 -5.9228 -0.0038 26 7 3.0419 -3.7695 -0.0032 27 1 -0.4850 0.8400 0.0004 28 1 4.5513 -7.8072 -0.0037 29 1 8.1273 -3.9087 -0.5176 30 1 8.7755 -5.5665 -0.5171 31 1 9.4049 -6.6538 1.5603 32 1 10.1783 -6.3506 3.8783 33 1 9.7848 -4.2144 5.0380 34 1 8.6179 -2.3814 3.8798 35 1 7.8446 -2.6846 1.5617 36 1 1.8484 -6.1673 0.8795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652114707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:45 Heat of formation + Delta-G solvation = 81.387216 kcal Electronic energy + Delta-G solvation = -24152.662817 eV Core-core repulsion = 20536.311171 eV Total energy + Delta-G solvation = -3616.351645 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.00706 -40.44349 -39.82381 -38.45513 -35.27131 -34.78628 -33.83267 -31.84779 -31.62029 -31.22197 -28.03867 -27.48098 -25.78248 -24.52254 -23.53229 -22.84031 -21.83013 -20.58505 -19.66291 -19.15077 -18.39595 -17.89214 -17.24139 -17.13273 -16.87233 -16.57078 -16.13946 -16.02223 -15.41575 -15.21278 -14.93336 -14.66959 -14.33489 -13.91912 -13.86699 -13.55143 -13.37334 -13.22928 -13.08041 -13.05444 -12.46334 -12.31361 -12.02112 -11.92881 -11.91920 -11.52417 -11.31711 -11.04953 -10.60267 -10.31392 -9.94758 -9.87829 -9.77871 -9.08092 -8.53736 -6.34560 -0.65493 0.11665 0.21737 0.44649 0.51303 1.23668 1.31843 1.35801 1.39929 1.48527 2.07890 2.19552 2.48053 2.70510 2.83876 2.86304 3.13830 3.38121 3.63540 3.66177 3.80756 4.02058 4.08120 4.09855 4.24212 4.32442 4.38666 4.58763 4.68467 4.87112 4.99647 5.09825 5.25921 5.48736 5.49971 5.55985 5.58740 5.73334 5.99671 6.04122 6.33312 6.41914 6.54476 6.83209 6.98669 8.58446 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.004022 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.958531 B = 6959.451890 C = 8554.030714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.053 3.947 3 Si 0.901 3.099 4 H -0.253 1.253 5 H -0.251 1.251 6 H -0.221 1.221 7 C -0.556 4.556 8 H 0.088 0.912 9 S 0.114 5.886 10 C 0.347 3.653 11 N -0.554 5.554 12 C 0.354 3.646 13 C -0.334 4.334 14 C 0.127 3.873 15 N -0.256 5.256 16 N -0.378 5.378 17 C 0.180 3.820 18 C -0.128 4.128 19 C -0.098 4.098 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.112 4.112 24 C 0.455 3.545 25 O -0.472 6.472 26 N -0.583 5.583 27 H 0.281 0.719 28 H 0.240 0.760 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.418 -12.405 5.711 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.155 4.155 3 Si 0.720 3.280 4 H -0.177 1.177 5 H -0.175 1.175 6 H -0.145 1.145 7 C -0.704 4.704 8 H 0.106 0.894 9 S 0.355 5.645 10 C -0.027 4.027 11 N -0.284 5.284 12 C 0.102 3.898 13 C -0.353 4.353 14 C -0.070 4.070 15 N -0.069 5.069 16 N -0.168 5.168 17 C 0.061 3.939 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.147 4.147 21 C -0.131 4.131 22 C -0.155 4.155 23 C -0.130 4.130 24 C 0.253 3.747 25 O -0.283 6.283 26 N -0.314 5.314 27 H 0.091 0.909 28 H 0.256 0.744 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.130 0.870 36 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 20.142 -10.822 5.102 23.427 hybrid contribution -2.159 -0.611 0.293 2.262 sum 17.984 -11.432 5.395 21.982 Atomic orbital electron populations 1.69981 1.07638 1.29476 1.46755 1.25634 0.95418 1.02123 0.92294 0.86125 0.81248 0.79521 0.81057 1.17747 1.17511 1.14468 1.22908 0.89999 0.98644 1.58873 0.89379 1.82638 1.07428 0.91136 1.83306 1.24940 0.84201 1.01472 0.92082 1.67601 1.20640 1.13515 1.26685 1.19309 0.88398 0.89212 0.92866 1.20356 0.94292 0.97311 1.23347 1.24275 0.90144 0.97391 0.95199 1.76876 1.15464 0.93488 1.21093 1.48611 1.03814 1.01540 1.62856 1.20739 0.77516 1.01078 0.94591 1.20087 1.01259 0.95154 0.96394 1.21300 0.96793 0.98155 0.95394 1.21497 1.00222 0.98285 0.94681 1.21557 0.97599 0.93144 1.00846 1.21416 0.99009 1.00415 0.94625 1.21287 0.98470 0.97459 0.95822 1.19188 0.84974 0.85714 0.84818 1.84553 1.46536 1.61114 1.36094 1.68439 1.35812 1.04203 1.22900 0.90866 0.74411 0.88164 0.85463 0.84319 0.83284 0.83578 0.84962 0.86990 0.70542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.25 13.96 21.64 0.30 -52.95 16 2 C 0.05 2.94 5.50 84.86 0.47 3.41 16 3 Si 0.90 39.73 27.73 68.60 1.90 41.63 16 4 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.22 -9.11 6.74 99.48 0.67 -8.44 16 7 C -0.56 -31.88 9.78 67.95 0.66 -31.22 16 8 H 0.09 5.65 6.71 -2.91 -0.02 5.63 16 9 S 0.11 5.53 19.79 -56.49 -1.12 4.41 16 10 C 0.35 16.23 7.83 180.40 1.41 17.64 16 11 N -0.55 -23.06 10.42 -194.39 -2.02 -25.08 16 12 C 0.35 12.87 8.04 134.21 1.08 13.95 16 13 C -0.33 -11.17 6.19 -21.27 -0.13 -11.30 16 14 C 0.13 3.13 12.05 85.65 1.03 4.16 16 15 N -0.26 -6.79 12.45 -56.45 -0.70 -7.49 16 16 N -0.38 -11.15 3.63 -348.89 -1.27 -12.42 16 17 C 0.18 4.23 6.56 85.63 0.56 4.79 16 18 C -0.13 -3.00 5.46 -19.87 -0.11 -3.11 16 19 C -0.10 -1.91 9.70 22.27 0.22 -1.69 16 20 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 21 C -0.11 -2.04 10.05 22.27 0.22 -1.82 16 22 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 23 C -0.11 -2.88 9.70 22.27 0.22 -2.66 16 24 C 0.46 17.06 7.89 85.21 0.67 17.73 16 25 O -0.47 -13.98 13.58 -86.59 -1.18 -15.16 16 26 N -0.58 -27.36 8.41 -308.67 -2.59 -29.95 16 27 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.10 2.41 8.09 -2.39 -0.02 2.39 16 30 H 0.13 2.25 8.09 -2.39 -0.02 2.23 16 31 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.43 7.85 9.06 -74.06 -0.67 7.17 16 Total: -1.00 -74.11 338.37 0.52 -73.59 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.44 Total: 18.32 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 6.75 Total: 5.11 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -6.29 Total: -127.90 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.18 Total: -15.16 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.90 Total: 41.63 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.12 Total: 4.41 kcal Total: -74.11 0.52 -73.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652114707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.980 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds