Wall clock time and date at job start Tue Mar 31 2020 15:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47235 * 240.00402 * 3 2 1 5 5 H 1.48497 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46938 * 120.00521 * 3 2 1 7 7 C 1.38809 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 157.94690 * 7 2 1 9 9 N 1.36938 * 119.99945 * 337.93835 * 7 2 1 10 10 C 1.46502 * 120.00314 * 324.92710 * 9 7 2 11 11 C 1.53002 * 109.47196 * 270.00008 * 10 9 7 12 12 C 1.52995 * 109.47058 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.46923 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99877 * 179.72591 * 13 12 11 15 15 O 1.21715 * 120.00294 * 0.27944 * 14 13 12 16 16 C 1.46442 * 119.99744 * 180.27558 * 14 13 12 17 17 S 1.75830 * 125.46525 * 0.02925 * 16 14 13 18 18 C 1.70609 * 91.58510 * 179.97438 * 17 16 14 19 19 C 1.33766 * 111.00216 * 359.97438 * 18 17 16 20 20 C 1.36793 * 125.45884 * 179.71723 * 16 14 13 21 21 Cl 1.73599 * 123.38221 * 0.02562 * 20 16 14 22 22 C 1.46501 * 119.99884 * 144.92154 * 9 7 2 23 23 C 1.53000 * 117.49938 * 3.24493 * 22 9 7 24 24 C 1.52997 * 117.49971 * 294.58133 * 22 9 7 25 25 H 0.97001 * 120.00312 * 355.76022 * 1 2 3 26 26 H 1.08994 * 109.47420 * 149.99680 * 10 9 7 27 27 H 1.09006 * 109.46631 * 29.99627 * 10 9 7 28 28 H 1.09005 * 109.46784 * 59.99746 * 11 10 9 29 29 H 1.09002 * 109.46655 * 299.99728 * 11 10 9 30 30 H 1.09005 * 109.47144 * 60.00439 * 12 11 10 31 31 H 1.08996 * 109.47528 * 300.00059 * 12 11 10 32 32 H 0.96999 * 120.00145 * 0.02562 * 13 12 11 33 33 H 1.08003 * 124.49633 * 179.97438 * 18 17 16 34 34 H 1.08001 * 122.45305 * 180.02562 * 19 18 17 35 35 H 1.09007 * 115.54855 * 148.90682 * 22 9 7 36 36 H 1.08997 * 117.49949 * 359.97438 * 23 22 9 37 37 H 1.09001 * 117.50128 * 145.02002 * 23 22 9 38 38 H 1.09006 * 117.49602 * 214.97699 * 24 22 9 39 39 H 1.08997 * 117.50422 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0310 -1.2362 -0.3517 9 7 1.4007 -2.3448 0.4444 10 6 0.4455 -2.2814 1.5534 11 6 1.1885 -2.4677 2.8778 12 6 0.1910 -2.4008 4.0359 13 7 0.9024 -2.5798 5.3041 14 6 0.2229 -2.5521 6.4676 15 8 -0.9825 -2.3835 6.4647 16 6 0.9349 -2.7249 7.7356 17 16 2.6667 -2.9762 7.9071 18 6 2.5348 -3.0558 9.6063 19 6 1.2647 -2.9006 9.9963 20 6 0.3601 -2.7108 8.9768 21 17 -1.3404 -2.4808 9.2394 22 6 1.7038 -3.6308 -0.1887 23 6 2.7654 -3.6430 -1.2904 24 6 1.2873 -3.8147 -1.6493 25 1 -0.4850 0.8377 0.0621 26 1 -0.2969 -3.0712 1.4391 27 1 -0.0521 -1.3116 1.5492 28 1 1.9310 -1.6778 2.9921 29 1 1.6862 -3.4375 2.8819 30 1 -0.5516 -3.1905 3.9219 31 1 -0.3063 -1.4310 4.0317 32 1 1.8631 -2.7139 5.3065 33 1 3.3664 -3.2108 10.2778 34 1 0.9712 -2.9191 11.0355 35 1 1.6464 -4.5015 0.4646 36 1 3.2381 -2.6943 -1.5444 37 1 3.4061 -4.5220 -1.3622 38 1 0.9561 -4.8066 -1.9571 39 1 0.7873 -2.9792 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689989442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:15 Heat of formation + Delta-G solvation = 38.026420 kcal Electronic energy + Delta-G solvation = -22532.558551 eV Core-core repulsion = 19015.434134 eV Total energy + Delta-G solvation = -3517.124417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.74157 -38.09135 -37.12994 -36.23116 -35.27092 -33.59632 -31.73462 -30.36439 -29.15895 -25.89880 -24.84624 -23.48017 -21.52133 -21.30392 -21.03959 -19.77246 -19.61074 -18.62911 -16.68708 -16.34726 -15.79675 -15.64105 -15.37499 -15.02553 -14.58797 -14.32242 -13.86837 -13.81331 -13.58629 -13.25910 -13.08521 -12.65070 -12.19009 -11.94211 -11.68836 -11.59300 -11.50956 -11.02865 -10.99390 -10.82631 -10.76516 -10.68186 -10.22511 -10.11476 -9.85356 -9.66626 -9.58056 -9.29053 -9.27728 -8.88498 -8.81128 -8.48545 -6.60278 -5.81216 -3.42365 0.07852 0.87090 1.35505 1.90441 2.25354 3.10869 3.16707 3.33791 3.41059 3.41570 4.42008 4.49770 4.71482 4.81221 4.91576 5.14740 5.28433 5.30823 5.53839 5.60967 5.63153 5.75343 5.89900 5.98991 6.10698 6.25774 6.31370 6.37346 6.48024 6.62844 6.66417 6.72618 7.02181 7.08533 7.21531 7.51066 7.65003 7.77310 8.18856 8.44450 9.12243 9.75441 10.31050 11.14417 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002734 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.517267 B =10240.276564 C =10513.495846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.012 3.988 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.552 5.552 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.123 3.877 13 N -0.720 5.720 14 C 0.580 3.420 15 O -0.511 6.511 16 C -0.259 4.259 17 S 0.245 5.755 18 C -0.227 4.227 19 C -0.143 4.143 20 C 0.013 3.987 21 Cl -0.015 7.015 22 C 0.121 3.879 23 C -0.197 4.197 24 C -0.222 4.222 25 H 0.256 0.744 26 H 0.029 0.971 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.395 0.605 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -7.670 18.892 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.189 4.189 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.023 3.977 11 C -0.187 4.187 12 C 0.000 4.000 13 N -0.371 5.371 14 C 0.364 3.636 15 O -0.388 6.388 16 C -0.381 4.381 17 S 0.511 5.489 18 C -0.365 4.365 19 C -0.174 4.174 20 C -0.030 4.030 21 Cl 0.014 6.986 22 C 0.012 3.988 23 C -0.235 4.235 24 C -0.263 4.263 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.229 0.771 33 H 0.195 0.805 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.550 -7.465 17.817 20.099 hybrid contribution -0.266 0.900 1.156 1.489 sum 5.284 -6.564 18.973 20.760 Atomic orbital electron populations 1.70029 1.05488 1.26269 1.50608 1.25119 0.94958 0.98710 1.00064 0.86490 0.79265 0.83494 0.78301 1.20693 1.21546 1.20880 1.19025 0.94396 0.85527 1.40030 0.91678 1.43399 1.49129 1.01420 1.32847 1.20856 0.90450 1.03394 0.83048 1.22465 0.98870 1.01343 0.95973 1.21521 0.95543 1.02134 0.80820 1.46047 1.11260 1.73424 1.06350 1.16787 0.86857 0.77913 0.82049 1.90893 1.12938 1.48414 1.86590 1.24710 0.98482 1.17372 0.97564 1.83229 1.01003 1.64785 0.99879 1.25206 1.01559 1.08481 1.01266 1.19768 0.91390 1.05593 1.00664 1.20359 0.88402 1.02102 0.92102 1.98409 1.09238 1.94566 1.96368 1.21222 1.00336 0.90215 0.87066 1.23032 0.91931 1.01788 1.06735 1.23363 0.97335 1.00626 1.04984 0.93397 0.95287 0.87947 0.91476 0.93108 0.91535 0.91049 0.77123 0.80521 0.82847 0.89625 0.88523 0.90827 0.91266 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.53 11.33 55.49 0.63 -23.90 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 3 Si 0.90 20.93 29.61 -169.99 -5.03 15.90 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.75 8.63 -15.06 -0.13 -6.88 16 8 H 0.07 1.69 6.55 -52.49 -0.34 1.35 16 9 N -0.55 -13.05 2.78 -165.66 -0.46 -13.51 16 10 C 0.15 3.27 5.34 -4.04 -0.02 3.25 16 11 C -0.15 -2.59 5.65 -26.73 -0.15 -2.75 16 12 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 13 N -0.72 -10.20 5.55 -61.69 -0.34 -10.54 16 14 C 0.58 8.86 7.78 -12.96 -0.10 8.76 16 15 O -0.51 -9.48 15.09 5.18 0.08 -9.40 16 16 C -0.26 -3.20 6.45 -36.80 -0.24 -3.44 16 17 S 0.24 2.02 22.15 -107.50 -2.38 -0.36 16 18 C -0.23 -1.59 10.92 29.16 0.32 -1.27 16 19 C -0.14 -1.22 10.06 -41.38 -0.42 -1.64 16 20 C 0.01 0.15 6.40 -40.34 -0.26 -0.11 16 21 Cl -0.01 -0.19 27.24 -51.86 -1.41 -1.60 16 22 C 0.12 2.51 6.56 -67.93 -0.45 2.06 16 23 C -0.20 -3.79 9.80 -26.69 -0.26 -4.06 16 24 C -0.22 -4.48 10.36 -26.69 -0.28 -4.75 16 25 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 26 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 27 H 0.10 2.57 5.36 -51.93 -0.28 2.29 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.39 4.66 7.58 -40.82 -0.31 4.35 16 33 H 0.18 0.69 8.06 -52.48 -0.42 0.26 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.10 2.04 6.37 -51.93 -0.33 1.71 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -30.15 357.14 -10.68 -40.82 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.04 Total: 5.83 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.09 Total: -8.61 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.17 Total: -47.96 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.36 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.41 Total: -1.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.15 -10.68 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689989442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.847 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds